@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 112_tII_WHEAT: (2014-05-01 )
AGCDASALRPCVGAIMLGGAVTPGCCARLRAQRACLCQYARDPSYRGYVNSPRAQSVVAACGLPGPKC
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...-----.--..--..---.10....--.--...--20------------..-----------.--......30.-----------.-----.-......40----.------.-.------------..---..--------.50--...-.....60.....-------..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC-----
D
--
A
S
--
A
L
---
R
P
C
V
G
A
I
--M--LGG--A-------------V
T
-----------
P
--
G
C
C
A
R
L
R
-
A
-----------
Q
-----
R
-
A
C
L
C
Q
YAR----D------P-S------------YR---GY--------VNS--P
R
A
-
Q
S
V
V
A
ACGLPGP-------KC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
93.51
46%
-133
- C1 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
-----
Q
--
A
S
--
Q
L
---
A
V
C
A
S
A
I
--
L
--
S
G
A
--
K
-------------
P
S
-----------
G
--
E
C
C
G
N
L
R
-
A
-----------
Q
-----
Q
-
G
C
F
C
Q
Y
A
K
----
D
------
P
-
T
------------
Y
G
---
Q
Y
--------
I
R
S
--
P
H
A
-
R
D
T
L
T
S
C
G
L
A
V
P
-------
H
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
83.59
51%
-115
- C1 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
--
G
G
A
--
R
-------------
P
T
-----------
A
--
A
C
C
S
S
L
R
-
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
----
D
------
P
-
R
------------
Y
G
---
R
Y
--------
V
N
S
--
P
N
A
-
R
K
A
V
S
S
C
G
I
A
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
83.59
51%
-115
- C1 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
--
G
G
A
--
R
-------------
P
T
-----------
A
--
A
C
C
S
S
L
R
-
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
----
D
------
P
-
R
------------
Y
G
---
R
Y
--------
V
N
S
--
P
N
A
-
R
K
A
V
S
S
C
G
I
A
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
83.59
51%
-115
- C1 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
--
G
G
A
--
R
-------------
P
T
-----------
A
--
A
C
C
S
S
L
R
-
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
----
D
------
P
-
R
------------
Y
G
---
R
Y
--------
V
N
S
--
P
N
A
-
R
K
A
V
S
S
C
G
I
A
L
P
-------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
78.10
30%
-127
- C1 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AIDL
C
G
M
-----
S
--
Q
D
--
E
L
---
N
E
C
K
P
A
V
--
S
--
K
E
N
--
P
-------------
T
S
-----------
P
S
Q
P
C
C
T
A
L
Q
H
A
-----------
D
-----
F
-
A
C
L
C
G
Y
K
N
----
S
------
P
-
W
------------
L
G
---
S
F
G-------
V
D
P
--
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
77.95
37%
-121
- C1 -
2ALG
2
NLTP1_PRUPE
A:
[3-79]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
-----
G
--
Q
V
S
S
S
L
---
A
P
C
I
P
Y
V
--
R
--
G
G
G
--
A
-------------
V
P
-----------
P
--
A
C
C
N
G
I
R
-
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
C
N
C
--
L
K
----
Q
------
L
-
S
-------------
A
---
S
V
PG------
V
N
P
--
N
N
A
-
A
A
L
P
G
K
C
G
V
S
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
76.98
30%
-131
- C1 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
S
C
-----
G
Q
V
A
S
--
A
I
---
A
P
C
I
S
Y
A
--
R
--
G
Q
G
--
S
G------------
P
S
-----------
A
--
G
C
C
S
G
V
R
-
S
-----------
L
-----
N
-
N
A
----
A
R
----
T
------
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
---
G
V
SG------
L
N
A
--
G
N
A
-
A
S
I
P
S
K
C
G
V
S
I
P
YTISTST
D
C
SRVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
74.11
28%
-143
- C1 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
D
--
E
L
---
N
E
C
K
P
A
V
--
S
--
K
E
N
PT
S
-------------
P
S
-----------
Q
--
P
C
C
T
A
L
Q
-
H
-----------
A
-----
D
F
A
C
L
C
G
Y
K
N
----
S
------
P
-
W
------------
L
G
---
S
F
G-------
V
D
P
--
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
69.24
28%
-125
- C1 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
--
L
V
---
R
P
C
L
S
Y
V
--
Q
--
G
G
P
--
G
-------------
P
S
-----------
G
--
Q
C
C
D
G
V
K
-
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
C
N
C
L
K
G
I
----
A
------
R
-
G
------------
I
H
----
N
--------
L
N
E
--
D
N
A
-
R
S
I
P
P
K
C
G
V
N
L
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
SP3
68.93
26%
-152
- C1 -
1S6D
-
2SS8_HELAN
A:
[1-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
--
A
E
--
M
L
---
N
H
C
G
M
Y
L
--
M
KN
L
G
E
--
R
-------------
S
Q
VSPR
M
R
E
E
D
H
K
Q
--
L
C
C
M
Q
L
K
-
N
L----------
D
-----
E
-
K
C
M
C
P
A
I
M
M
M
L
N
E
------
P
-
M
------------
W
I
---
R
M
--------
R
D
Q
V
M
S
M
A
-
H
N
L
P
I
E
C
N
L
M
S
Q
-------
P
C
QM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
68.83
30%
-120
- C1 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
G
--
N
L
---
A
Q
C
I
G
F
L
--
Q
--
K
G
G
--
V
-------------
V
P
-----------
P
--
S
C
C
T
G
V
K
-
N
I
L
NSSRTTADR
R
-----
A
-
V
C
S
C
L
K
A
A
----
A
------
G
-
A
------------
V
R
----
G
--------
I
N
P
--
N
N
A
-
E
A
L
P
G
K
C
G
V
N
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
67.26
31%
-126
- C1 -
1AFH
-
NLTP_MAIZE
A:
[3-80]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
C
-----
G
--
Q
V
A
S
A
I
---
A
P
C
I
S
Y
A
--
R
--
G
Q
G
--
S
G------------
P
S
-----------
A
--
G
C
C
S
G
V
R
-
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
C
N
C
--
L
K
----
N
------
A
-
A
-------------
A
---
G
V
SG------
L
N
A
--
G
N
A
-
A
S
I
P
S
K
C
G
V
S
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
66.93
30%
-131
- C1 -
1HYP
-
HPSE_SOYBN
A:
[10-73]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
---
S
I
C
L
N
I
L
GG
S
--
L
G
T
-----------------
V
-----------
D
--
D
C
C
A
L
I
G
-
G
-----------
L
G
D
I
E
A
I
-
V
C
L
C
I
Q
L
R
----
A
---------------------
L
G
---
I
---------
L
N
L
--
N
R
N
L
Q
L
I
L
N
S
C
G
R
S
Y
P
-------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
66.32
30%
-125
- C1 -
1T12
-
NLTP1_TOBAC
A:
[9-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
--
N
L
---
A
P
C
L
A
Y
L
--
R
--
N
T
G
----------------
P
L
-----------
G
--
R
C
C
G
G
V
K
-
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
C
T
C
--
L
K
----
S
------
A
-
A
-------------
G
---
A
I
SG------
I
N
L
--
G
K
A
-
A
G
L
P
S
T
C
G
V
N
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
56.42
14%
-137
- C1 -
1U78
-
TC3A_CAEEL
A:
[2-104]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PRG
S
A
L
-----
S
--
D
T
--
E
R
---
A
Q
-
L
D
V
M
--
K
--
L
L
N
--
V
-------------
S
L
-----------
H
--
E
M
S
R
K
I
S
-
R
-----------
S
-----
R
-
H
C
I
R
V
Y
L
K
----
D
------
P
V
S
------------
Y
G
---
T
S
KRAPRRKA
L
S
V
--
R
D
E
-
R
N
V
I
R
A
A
S
N
S
C
K
-------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
SP3
54.79
11%
-141
* C1 *
1TC3
-
TC3A_CAEEL
C:
[1-51]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PRG
S
A
L
-----
S
--
D
T
--
E
R
---
A
Q
-
L
D
V
M
--
K
--
L
L
N
--
V
-------------
S
L
-----------
H
--
E
M
S
R
K
I
S
-
R
-----------
S
-----
R
-
H
C
I
R
V
Y
L
K
----
D
------
P
-
V
-----------------
S
Y
--------
G
T
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
48.64
23%
-73
- C1 -
4EPQ
1
?
A:
[34-472]
D
Y
Q
F
P
L
PQKN
S
E
L
W
I
I
Q
K
K
T
L
Q
D
L
S
S
GKQKLDS
F
Q
S
L
E
S
I
L
E
I
L
R
DSKNQNDEKY
F
N
L
K
A
V
F
E
Q
LD
K
E
E
Q
T
Y
F
L
E
Q
F
I
P
K
I
C
Q
L
V
L
K
IKKK
Q
L
K
N
Q
IPKESKIY
E
A
A
F
S
R
E
E
I
S
Y
Y
V
S
C
M
F
L
CILKDQDRKIYKDFRLIYLKDLV
Q
Q
I
N
I
R
R
Q
E
K
I
K
C
F
Y
E
Y
L
K
Q
A
L
D
FS
E
K
E
S
K
E
V
V
I
F
Q
RINC
G
Q
L
E
D
Y
E
N
W
V
D
K
L
K
AIKL
K
N
V
Q
L
T
DDKLIEDFPGTLQVDFANCDIGGGILG
N
G
L
-----
V
--
Q
E
--
E
I
---
R
F
C
V
C
P
E
--
M
--
L
V
S
--
L
-------------
L
V
-----------
F
--
D
--
Q
S
M
E
-
A
-----------
N
-----
E
-
V
I
I
M
K
G
I
K
----
Q
Y
-----
S
-
D
------------
Y
Q
---
G
Y
--------
S
N
S
--
F
R
F
-
V
K
------
M
G
N
S
-------
K
I
Q
K
Q
K
R
T
N
P
Q
T
I
L
A
I
D
A
L
CFNSSDNQFS
E
V
N
V
S
R
E
L
N
K
S
Y
M
G
F
K
QEDQLK
T
I
S
T
G
KWGCGAFLGV
F
D
L
K
F
A
I
Q
W
I
A
S
S
R
S
N
K
K
M
I
I
C
TFQD
E
Q
T
T
K
Q
I
Q
Q
V
F
D
L
Y
KQKN
A
S
I
F
L
K
L
V
M
D
YPNSKYMEDYT
L
L
E
Y
L
I
E
L
G
K
E
KA---------------------------------------------------
30
SP3
47.69
14%
-106
- C1 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
YSPN
S
P
A
Q
P
Q
-----
T
--
A
G
--
T
L
T
L
L
P
V
A
L
R
A
P
--
V
--
T
A
G
--
Q
-------------
L
A
-----------
V
--
E
N
G
H
Y
V
V
-
E
-----------
T
-----
L
-
A
R
A
C
D
G
C
L
----
N
------
G
-
E
------------
F
A
---
A
L
--------
I
T
G
--
P
V
H
-
K
G
V
I
N
D
A
G
I
P
F
T
-------
G
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
22
Fugue
45.67
14%
-120
- C1 -
2CKX
-
?
A:
[578-660]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
P
F
-----
S
--
V
A
--
E
V
---
E
A
L
V
E
A
V
--
E
--
H
L
G
--
T
GR
W
R
D
V
K
M
R
AFDN
A
D
-----------
H
--
R
T
Y
V
D
L
K
-
D
-----------
K
-----
W
-
K
T
L
V
H
T
A
S
----
I
------
A
-
P
------------
Q
Q
RRG
E
P
--------
V
P
Q
--
D
L
L
-
D
R
V
L
A
A
H
A
Y
W
S
Q
-------
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
43.28
17%
-79
- C1 -
1S6D
-
2SS8_HELAN
A:
[1-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
E
A
EML
N
H
C
G
M
Y
L
M
-----
K
--
N
L
--
G
E
---
R
S
Q
V
S
P
R
--
M
--
R
E
E
--
D
-------------
H
K
-----------
Q
--
L
C
C
M
Q
L
K
-
N
L----------
D
-----
E
-
K
C
M
C
P
A
I
M
----
M
M
L
N
EPM
W
-
I
------------
R
M
---
R
D
--------
Q
V
M
--
S
M
A
-
H
N
L
P
I
E
C
N
L
M
S
Q
-------
P
C
QM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60.......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AGC
D
A
S
A
L
R
P
C
V
G
A
I
MLGGAV
T
P
G
C
C
A
R
L
R
A
Q
R
A
C
L
C
Q
YARDPSYRGYVNSP
R
A
Q
S
V
V
A
ACGLPGPKC
43
97.20
100%
-143
- C- -
M043
-
A:
[1-106]
A
G
C
D
A
S
A
L
R
P
C
V
G
A
I
M
L
G
G
A
V
T
P
G
C
C
A
R
L
R
A
Q
R
A
C
L
C
Q
Y
A
R
D
P
S
Y
R
G
Y
V
N
S
P
R
A
Q
S
V
V
A
A
C
G
L
P
G
P
K
C
42
96.91
100%
-153
- C- -
M042
-
A:
[1-106]
A
G
C
D
A
S
A
L
R
P
C
V
G
A
I
M
L
G
G
A
V
T
P
G
C
C
A
R
L
R
A
Q
R
A
C
L
C
Q
Y
A
R
D
P
S
Y
R
G
Y
V
N
S
P
R
A
Q
S
V
V
A
A
C
G
L
P
G
P
K
C
41
94.36
100%
-140
- C- -
M041
-
A:
[1-100]
A
G
C
D
A
S
A
L
R
P
C
V
G
A
I
M
L
G
G
A
V
T
P
G
C
C
A
R
L
R
A
Q
R
A
C
L
C
Q
Y
A
R
D
P
S
Y
R
G
Y
V
N
S
P
R
A
Q
S
V
V
A
A
C
G
L
P
G
P
K
C