@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 115_tII_ORYSA: (2014-05-01 )
RASKKASCDLMQLSPCVSAFSGVGQGSPSSACCSKLKAQGSSCLCLYKDDPKVKRIVSSNRTKRVFTACKVPAPNC
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------........-----.--10--........20-----------........-----------30.----....----..-----------.----40.------------.-..----....50-----......----...--60...-....-.70...-------..-------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------RASKKASC-----
D
--
L
M
--QL
S
P
C
V
S
A
F
S
-----------GVGQGS
P
S
-----------
S
A
C
----
C
S
K
L
----
K
A-----------Q----GS
S
------------
C
-
L
C
----
L
YKDD------
P
K
V
K
R
I
----
V
SS--NR
T
K
R
-
V
F
T
A
-CKVPAP-------NC-------------------------------------------------------------------------------------------------------
11
HHSearch
88.93
34%
-95
- C5 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
----------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
-----
Q
--
A
S
--
Q
L
A
V
C
A
S
A
I
L
-----------
S
--
G
A
K
P
S
-----------
G
E
C
----
C
G
N
L
----
R
A
-----------
Q
-----
Q
G
------------
C
-
F
C
----
Q
Y
A
K
D
------
P
T
Y
G
Q
Y
----
I
R
S
--
P
H
A
R
D
-
T
L
T
S
-
C
G
L
A
V
P
-------
H
C
-------------------------------------------------------------------------------------------------------
2
Fugue
82.71
26%
-74
- C5 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------
A
I
D
L
C
G
M
-----
S
--
Q
D
--
E
L
N
E
C
K
P
A
V
S
-----------
K
E
N
P
T
S
P
S
-----------
Q
P
C
----
C
T
A
L
----
Q
H
-----------
A
----
D
F
A
------------
C
-
L
C
----
G
Y
K
N
S
------
P
W
L
G
S
F
G---
V
D
P
--
E
L
A
S
A
-
L
P
K
Q
-
C
G
L
A
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------
13
HHSearch
82.19
28%
-90
- C5 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
D
--
E
L
N
E
C
K
P
A
V
S
-----------
K
E
N
P
T
S
P
S
-----------
Q
P
C
----
C
T
A
L
----
Q
H
-----------
A
----
D
F
A
------------
C
-
L
C
----
G
Y
K
N
S
------
P
W
L
G
S
F
G---
V
D
P
--
E
L
A
S
A
-
L
P
K
Q
-
C
G
L
A
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------
28
SP3
79.16
18%
-101
- C5 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
--
A
E
--
M
L
N
H
C
G
M
Y
L
M
-----------
K
N
L
G
E
R
S
Q
VSPR
M
R
E
E
D
H
K
Q
L
C
----
C
M
Q
L
----
K
N
-----------
L
----
D
E
K
------------
C
-
M
C
P
A
I
M
M
M
L
N
E
------
P
M
W
I
R
M
----
R
D
Q
V
M
S
M
A
H
N
-
L
P
I
E
-
C
N
L
M
S
Q
-------
P
C
QM-----------------------------------------------------------------------------------------------------
12
HHSearch
74.05
37%
-73
- C5 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
---------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
T
V
C
T
G
A
I
A
-----------
G
--
G
A
R
P
T
-----------
A
A
C
----
C
S
S
L
----
R
A
-----------
Q
-----
Q
G
------------
C
-
F
C
----
Q
F
A
K
D
------
P
R
Y
G
R
Y
----
V
N
S
--
P
N
A
R
K
-
A
V
S
S
-
C
G
I
A
L
P
-------
T
C
-------------------------------------------------------------------------------------------------------
1
Fugue
73.98
36%
-73
- C5 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
T
V
C
T
G
A
I
A
-----------
G
--
G
A
R
P
T
-----------
A
A
C
----
C
S
S
L
----
R
A
-----------
Q
-----
Q
G
------------
C
-
F
C
----
Q
F
A
K
D
------
P
R
Y
G
R
Y
----
V
N
S
--
P
N
A
R
K
-
A
V
S
S
-
C
G
I
A
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------
26
SP3
73.53
25%
-78
* C5 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
--------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
-----
G
Q
V
A
S
--
A
I
A
P
C
I
S
Y
A
R
-----------
G
Q
G
S
G
-
P
S
-----------
A
G
C
----
C
S
G
V
----
R
S
-----------
L
----
N
N
A
ART
T
A
D
R
R
A
A
C
N
C
-
L
K
----
N
A
A
A
G
V-----
S
G
--------
L
N
A
--
G
N
A
A
S
-
I
P
S
K
-
C
G
V
S
I
P
YTISTST
D
C
SRVN---------------------------------------------------------------------------------------------------
17
HHSearch
73.26
27%
-84
- C5 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
---------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
-----
G
--
Q
V
S
S
S
L
A
P
C
I
P
Y
V
R
-----------
G
--
G
G
A
V
P
-----------
P
A
C
----
C
N
G
I
----
R
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
A
------------
C
-
N
C
------
L
K
Q
------
L
S
-
A
S
V
PG--
V
N
P
--
N
N
A
A
A
-
L
P
G
K
-
C
G
V
S
I
P
----------------------------------------------------------------------------------------------------------------
25
SP3
72.24
32%
-75
- C5 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
T
V
C
T
G
A
I
A
-----------
G
G
A
--
R
P
T
-----------
A
A
C
----
C
S
S
L
----
R
A
-----------
Q
-----
Q
G
------------
C
-
F
C
----
Q
F
A
K
D
------
P
R
Y
G
R
Y
----
V
N
S
--
P
N
A
R
K
-
A
V
S
S
-
C
G
I
A
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------
18
HHSearch
71.00
25%
-74
- C5 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
---------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
C
-----
G
--
Q
V
A
S
A
I
A
P
C
I
S
Y
A
R
-----------
G
Q
-
G
S
G
P
S
-----------
A
G
C
----
C
S
G
V
----
R
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
A
------------
C
-
N
C
------
L
K
N
------
A
A
-
A
G
V
SG--
L
N
A
--
G
N
A
A
S
-
I
P
S
K
-
C
G
V
S
I
P
----------------------------------------------------------------------------------------------------------------
14
HHSearch
68.76
28%
-62
- C5 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
--
L
V
R
P
C
L
S
Y
V
Q
-----------
G
G
--
P
G
P
S
-----------
G
Q
C
----
C
D
G
V
----
K
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
A
------------
C
-
N
C
----
L
K
G
I
A
------
R
G
I
H
-
N
----
L
N
E
--
D
N
A
R
S
-
I
P
P
K
-
C
G
V
N
L
P
----------------------------------------------------------------------------------------------------------------
19
HHSearch
66.12
27%
-66
- C5 -
1T12
-
NLTP1_TOBAC
A:
[2-78]
---------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
-----
G
--
Q
V
T
S
N
L
A
P
C
L
A
Y
L
R
-----------
N
--
T
G
-
P
L
-----------
G
R
C
----
C
G
G
V
----
K
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
A
------------
C
-
T
C
------
L
K
S
------
A
A
-
G
A
I
SG--
I
N
L
--
G
K
A
A
G
-
L
P
S
T
-
C
G
V
N
I
P
----------------------------------------------------------------------------------------------------------------
27
SP3
63.95
21%
-79
- C5 -
1HYP
-
?
?:
[6-80]
---------------------------------------------------------------------------------------------------------------------------------------------------------
P
S
C
-----
P
------
D
L
S
I
C
L
N
--
I
-----------
L
G
G
S
L
G
T
V
-----------
D
D
C
----
C
A
L
I
G
G
LG
D
I
-----------
E
----
A
I
V
------------
C
-
L
C
----
I
Q
L
R
A
------
L
G
I
-------
L
N
L
--
N
R
N
L
Q
-
L
I
L
N
S
C
G
R
S
Y
P
SNA----
T
C
PRT----------------------------------------------------------------------------------------------------
15
HHSearch
62.59
23%
-63
- C5 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
G
--
N
L
A
Q
C
I
G
F
L
Q
-----------
K
--
G
G
V
V
P
-----------
P
S
C
----
C
T
G
V
----
K
N
I
L
NSSRTTADR
R
-----
A
V
------------
C
-
S
C
----
L
K
A
A
A
------
G
A
V
R
-
G
----
I
N
P
--
N
N
A
E
A
-
L
P
G
K
-
C
G
V
N
I
P
----------------------------------------------------------------------------------------------------------------
21
HHSearch
60.73
24%
-73
- C5 -
1HYP
-
HPSE_SOYBN
A:
[6-73]
---------------------------------------------------------------------------------------------------------------------------------------------------------
P
S
C
-----
P
------
D
L
S
I
C
L
N
I
L
G
-----------
G
S
L
G
T
--
V
-----------
D
D
C
----
C
A
L
I
----
G
G
-----------
L
G
D
I
E
A
I
V
------------
C
-
L
C
----
I
Q
L
R
A
--------
L
G
I
-----
L
N
L
--
N
R
N
L
Q
L
I
L
N
S
-
C
G
R
S
Y
P
-------
S
--------------------------------------------------------------------------------------------------------
9
Fugue
59.36
11%
-70
- C5 -
4JEM
2
?
A:
[14-170]
----------------------------------------------------------------------------------------AVG
S
V
F
L
G
G
PFRQLVDPRTGVMS
S
G
D
Q
N
V
F
S
R
L
I
E
H
F
E
S
R
G
T
T
V
Y
N
A
H
R
R
E
AWGAEFLS
P
A
E
A
T
R
L
D
H
-----
D
--
E
I
--
K
A
A
D
V
F
V
A
F
P
-----------
G
V
P
A
S
P
G
T
-----------
H
V
E
----
I
G
W
A
----
S
G
-----------
M
----
G
K
P
------------
M
-
V
L
----
L
L
E
R
D
------
E
D
Y
A
F
L
----
V
T
G
--
L
E
S
Q
A
-
N
V
E
I
-
L
R
F
S
G
T
-------
E
E
I
V
E
R
L
D
G
A
V
A
R
V
L
G
R
AGEPTV----------------------------------------------------------------------------------
5
Fugue
55.30
14%
-40
- C5 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
-----
E
--
A
E
--
M
L
N
H
C
G
M
Y
L
M
KNLGERSQVSP
R
M
R
E
E
D
H
K
-----------
Q
L
C
----
C
M
Q
L
----
K
N
-----------
L
----
D
E
K
------------
C
-
M
C
----
P
A
I
M
M
M
L
N
EPM
W
I
R
M
R
D
----
Q
V
M
--
S
M
A
H
N
-
L
P
I
E
-
C
N
L
M
S
Q
-------
P
C
QM-----------------------------------------------------------------------------------------------------
8
Fugue
51.49
10%
-43
- C2 -
2FP8
-
STSY_RAUSE
A:
[32-333]
K
E
I
L
I
E
A
P
S
YAPN
S
F
T
F
D
STN
K
G
F
Y
T
S
V
QDGRVIKYEGPNS
G
F
V
D
F
A
YASPYWNKAFCENSTDAEKRPLCGRTY
D
I
S
Y
NLQNN
Q
L
Y
I
V
D
CYY
H
L
S
V
V
G
SEG
G
H
A
T
Q
L
A
TSVDG
V
P
F
K
W
L
Y
A
V
T
V
DQRTG
I
V
Y
F
T
D
VSTLYDDRG
V
Q
Q
I
M
D
T
S
D
K
T
G
-----
R
--
L
I
--
K
Y
D
P
S
T
K
E
T
T
-----------
L
L
L
K
E
L
H
V
-----------
P
G
-----
G
A
E
V
----
S
A
-----------
D
----
S
S
F
------------
V
-
L
V
----
A
E
F
L
S
------
H
Q
I
V
K
Y
W
---
L
E
G
--
P
K
K
G
T
-
A
E
V
L
-
V
K
I
P
N
P
-------
G
N
I
K
R
N
ADG
H
F
W
V
S
S
SEELDGNMH
G
R
V
D
P
K
G
I
K
F
D
EFGNIL
E
V
I
P
L
PPPFAG
E
H
F
E
Q
I
Q
E
H
DG
L
L
Y
I
G
T
LFHG
S
V
G
I
L
VY-------------------------
34
SP3
49.94
15%
-85
- C4 -
1Y02
-
RFFL_HUMAN
A:
[20-114]
---------------------------------------------------------------------------------------------------------------------------------------------------------
P
S
C
--------------
K
S
C
G
A
H
F
A
-----------
N
T
A
R
K
Q
T
C
-----------
L
D
C
K
K
N
F
C
M
T
C
----
S
S
-----------
Q
----
P
R
L
------------
C
L
L
C
----
Q
R
F
R
A
------
T
A
F
Q
R
E
E
L
M
K
M
K
V
--
K
D
L
R
D
-
Y
L
S
L
-
H
D
I
S
T
E
-------
M
C
RE
K
E
E
L
V
L
L
V
L
G
Q
QPV---------------------------------------------------------------------------------------
7
Fugue
43.36
10%
-15
* C7 *
1IWL
-
LOLA_ECOLI
A:
[1-182]
------------------------------------------------------------------------------------------------------------------------------------------D
A
A
S
D
L
K
S
R
L
D
K
V
S
S
F
H
A
-----
S
--
F
T
--
Q
K
V
T
-----------------------
D
V
-----------
Q
E
G
----
Q
G
D
L
----
W
V
-----------
K
----
R
P
N
------------
L
-
F
N
----
W
H
M
T
Q
------
P
D
E
S
I
L
----
V
S
D
--
G
K
T
L
W
-
F
Y
N
P
-
F
V
E
Q
A
T
-------
A
T
W
LKDATGNT
P
F
M
L
I
A
R
NQ
S
S
D
W
Q
Q
Y
N
I
K
Q
N
GD
D
F
V
L
T
P
KASNGNLK
Q
F
T
I
N
V
G
RDGTIH
Q
F
S
A
V
E
QDD
Q
R
S
S
Y
Q
L
K
S
Q
Q
N
GAVD
A
A
K
F
T
FTPPQG
V
T
V
D
D
QRK
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70.....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
RASKKASC
D
L
M
QL
S
P
C
V
S
A
F
S
GVGQGS
P
S
S
A
C
C
S
K
L
K
AQGS
S
C
L
C
L
YKDD
P
K
V
K
R
I
V
SSNR
T
K
R
V
F
T
A
CKVPAPNC
37
96.20
100%
-105
- C- -
M037
-
A:
[1-117]
R
A
S
K
K
A
S
C
D
L
M
Q
L
S
P
C
V
S
A
F
S
G
V
G
Q
G
S
P
S
S
A
C
C
S
K
L
K
A
Q
G
S
S
C
L
C
L
Y
K
D
D
P
K
V
K
R
I
V
S
S
N
R
T
K
R
V
F
T
A
C
K
V
P
A
P
N
C
35
44.39
100%
3
- C- -
M035
-
A:
[2-78]
R
A
S
K
K
A
S
C
D
L
M
Q
L
S
P
C
V
S
A
F
S
G
V
G
Q
G
S
P
S
S
A
C
C
S
K
L
K
A
Q
G
S
S
C
L
C
L
Y
K
D
D
P
K
V
K
R
I
V
S
S
N
R
T
K
R
V
F
T
A
C
K
V
P
A
P
N
C