@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 117_tII_ORYSA: (2014-05-01 )
ACDALQLSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVPSC
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..--.--....---..10...--.-..--.--.-20----.........30----------.-----.-.......40-.-.------------..-----..--------..50..-......60.-.-..-------..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC--D--ALQL---SP
C
A
S
A
I
--I-GN--A--S-P-----
S
A
S
C
C
S
R
M
K
E-----------Q-----Q-
P
C
L
C
Q
YARD-P-
N
------------
L
Q
-----
R
Y
--------VNSPNG-
K
K
V
L
A
A
CHV-P-VP-------SC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
92.18
48%
-102
- C3 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
--
Q
--
A
S
Q
L
---
A
V
C
A
S
A
I
--
L
-
S
G
--
A
--
K
-
P
-----
S
G
E
C
C
G
N
L
R
A
-----------
Q
-----
Q
-
G
C
F
C
Q
Y
A
K
D
-
P
-
T
------------
Y
G
-----
Q
Y
--------
I
R
S
P
H
A
-
R
D
T
L
T
S
C
G
L
-
A
-
V
P
-------
H
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
91.09
49%
-118
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[2-68]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
C
--
N
--
A
G
Q
L
---
T
V
C
T
G
A
I
--
A
-
G
G
--
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
D
-
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
P
N
A
-
R
K
A
V
S
S
C
G
I
-
A
-
L
P
-------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
90.16
49%
-118
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
G
C
--
N
--
A
G
Q
L
---
T
V
C
T
G
A
I
--
A
-
G
G
--
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
D
-
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
P
N
A
-
R
K
A
V
S
S
C
G
I
-
A
-
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
90.16
49%
-118
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
G
C
--
N
--
A
G
Q
L
---
T
V
C
T
G
A
I
--
A
-
G
G
--
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
D
-
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
P
N
A
-
R
K
A
V
S
S
C
G
I
-
A
-
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
71.82
26%
-101
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AID
L
C
GM
S
--
Q
D
E
L
---
N
E
C
K
P
A
V
--
S
-
K
E
NP
T
--
S
-
P
-----
S
Q
P
C
C
T
A
L
Q
H
A----------
D
-----
F
-
A
C
L
C
G
Y
K
N
S
-
P
-
W
------------
L
G
-----
S
F
G-------
V
D
P
E
L
A
-
S
A
L
P
K
Q
C
G
L
-
A
-
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
68.56
27%
-98
- C3 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
D
E
L
---
N
E
C
K
P
A
V
--
S
-
K
E
--
N
PT
S
-
P
-----
S
Q
P
C
C
T
A
L
Q
H
-----------
A
-----
D
F
A
C
L
C
G
Y
K
N
S
-
P
-
W
------------
L
G
-----
S
F
G-------
V
D
P
E
L
A
-
S
A
L
P
K
Q
C
G
L
-
A
-
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
67.67
31%
-75
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AI
S
C
--
G
Q
V
A
S
A
I
---
A
P
C
I
S
Y
A
--
R
-
G
Q
--
G
--
S
G
P
-----
S
A
G
C
C
S
G
V
R
S
-----------
L
-----
N
-
N
A
----
A
R
T
-
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
-----
G
V
SG------
L
N
A
G
N
A
-
A
S
I
P
S
K
C
G
V
-
S
-
I
P
YTISTST
D
C
SRVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
65.38
27%
-110
- C3 -
1HYP
-
HPSE_SOYBN
A:
[10-73]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
---
S
I
C
L
N
I
L
GG
S
-
L
G
--
T
----------
V
D
D
C
C
A
L
I
G
G
-----------
L
G
D
I
E
A
I
-
V
C
L
C
I
Q
L
R
A
----------------
L
G
-----
I
---------
L
N
L
N
R
N
L
Q
L
I
L
N
S
C
G
R
-
S
-
Y
P
-------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
64.34
28%
-55
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
L
V
---
R
P
C
L
S
Y
V
--
Q
-
G
G
--
P
--
G
-
P
-----
S
G
Q
C
C
D
G
V
K
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
C
N
C
L
K
G
I
A
-
R
-
G
------------
I
H
------
N
--------
L
N
E
D
N
A
-
R
S
I
P
P
K
C
G
V
-
N
-
L
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
64.00
31%
-89
- C3 -
1AFH
-
NLTP_MAIZE
A:
[9-80]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
A
I
---
A
P
C
I
S
Y
A
--
R
-
G
Q
--
G
--
S
G
P
-----
S
A
G
C
C
S
G
V
R
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
C
N
C
--
L
K
N
-
A
-
A
-------------
A
-----
G
V
SG------
L
N
A
G
N
A
-
A
S
I
P
S
K
C
G
V
-
S
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
63.18
23%
-67
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
G
N
L
---
A
Q
C
I
G
F
L
--
Q
-
K
G
--
G
--
V
-
V
-----
P
P
S
C
C
T
G
V
K
N
I
L
NSSRTTADR
R
-----
A
-
V
C
S
C
L
K
A
A
A
-
G
-
A
------------
V
R
------
G
--------
I
N
P
N
N
A
-
E
A
L
P
G
K
C
G
V
-
N
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
60.17
25%
-72
- C3 -
1T12
-
NLTP1_TOBAC
A:
[9-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
L
---
A
P
C
L
A
Y
L
--
R
-
N
T
--
G
----
P
-----
L
G
R
C
C
G
G
V
K
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
C
T
C
--
L
K
S
-
A
-
A
-------------
G
-----
A
I
SG------
I
N
L
G
K
A
-
A
G
L
P
S
T
C
G
V
-
N
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
56.76
26%
-67
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[9-79]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
L
---
A
P
C
I
P
Y
V
--
R
-
G
G
--
G
--
A
-
V
-----
P
P
A
C
C
N
G
I
R
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
C
N
C
--
L
K
Q
-
L
-
S
-------------
A
-----
S
V
PG------
V
N
P
N
N
A
-
A
A
L
P
G
K
C
G
V
-
S
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
53.40
29%
-87
- C5 -
4BFA
4
DUSC_ECOLI
A:
[22-338]
A
S
M
R
V
L
L
A
PMEGVLD
S
L
V
R
E
L
L
T
E
V
N
DYD
L
C
I
T
EFVRVVDQLLP
V
K
V
F
H
R
I
C
PELQNASRTPS
G
T
L
V
R
V
Q
L
L
G
Q
F
P
Q
W
L
A
E
N
A
A
R
A
V
E
L
GSW
G
V
D
L
N
CGCP
S
K
T
V
NGSGGG
A
T
L
L
K
D
P
E
L
I
Y
Q
G
A
K
A
M
R
E
A
VPAH
L
P
V
S
V
K
V
R
LGWDSGEK
K
F
E
I
A
D
A
V
Q
Q
A
GAT
E
L
V
V
HGRTKEQGYRAEHID
W
Q
A
I
G
D
I
R
Q
R
L
N
I
P
V
I
A
N
G
EIWD
W
Q
S
A
Q
--
Q
--
C
M
A
I
---
S
G
C
D
A
V
M
--
I
-
G
R
--
G
--
A
-
L
-----
N
I
-------------------------------------
P
-
N
------------
L
S
-----
R
V
--------
V
K
Y
N
E
P
-
R
-------
M
-
P
-
W
P
-------
E
V
V
A
L
L
Q
K
Y
T
R
L
E
K
Q
GDTGL
Y
H
V
A
R
I
K
Q
W
L
S
Y
L
R
K
E
Y
D
E
A
T
E
L
F
Q
H
V
R
VLNN
S
P
D
I
A
R
A
I
Q
A
IDIEKL-------------------------------------------------------------------------------------------------------------------------------
30
SP3
50.80
19%
-66
- C3 -
1KNG
-
CYCY_BRADU
A:
[50-193]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RPAPQ
T
A
L
P
P
LEGL
Q
A
--
D
--
N
V
Q
V
---
P
G
L
D
P
A
A
--
F
-
K
G
-----
K
-
V
S
L
V
N
V
W
A
S
W
C
V
P
C
H
D
-----------
E
-----
A
-
P
L
L
T
E
L
G
K
D
-
K
-
R
------------
F
Q
L
V
G
I
N
Y
K
--------
D
A
A
D
N
A
-
R
R
F
L
G
R
Y
G
N
-
P
-
F
G
-------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L-------------------------------------------------------------------------------------------------------------------------------------------
31
SP3
47.28
11%
-89
- C3 -
1F9M
-
TRXF_SPIOL
A:
[10-121]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEAIVG
K
V
T
E
V
--
N
--
K
D
T
F
------
W
P
I
V
--
K
A
A
G
--
D
--
K
-
P
V
V
L
D
M
F
T
Q
W
C
G
P
C
K
A
-----------
M
-----
A
-
P
K
Y
E
K
L
A
E
E
Y
L
-
D
V
I
----------
F
L
-----
K
L
--------
D
C
N
Q
E
N
-
K
T
L
A
K
E
L
G
I
-
R
V
V
P
-------
T
F
K
I
L
K
ENSVV
G
E
V
T
G
AK
Y
D
K
L
L
E
A
I
Q
A
A
R
S--------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
SP3
45.30
13%
-73
- C3 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
-------------------------------------------------------------------------------------------------------------------------------------------------V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
YSPN
S
P
A
Q
P
Q
--
T
--
A
G
T
L
T
L
L
P
V
A
L
R
A
P
--
V
-
T
A
--
G
--
Q
-
L
-----
A
V
E
N
G
H
Y
V
V
E
-----------
T
-----
L
-
A
R
A
C
D
G
C
L
N
-
G
-
E
------------
F
A
-----
A
L
--------
I
T
G
P
V
H
-
K
G
V
I
N
D
A
G
I
-
P
-
F
T
-------
G
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
34
SP3
43.94
16%
-61
- C3 -
1XFL
-
TRXH1_ARATH
A:
[1-114]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
A
S
E
E
G
Q
V
I
A
C
H
--
T
--
V
E
T
W
---
N
E
Q
L
Q
K
A
--
N
-
E
S
--
K
--
T
-
L
V
V
V
D
F
T
A
S
W
C
G
P
C
R
F
-----------
I
-----
A
-
P
F
F
A
D
L
A
K
K
L
P
-
N
------------
V
L
-----
F
L
K
-------
V
D
T
D
E
L
-
K
S
V
A
S
D
W
A
I
Q
A
-
M
P
-------
T
F
M
F
L
K
EGKIL
D
K
V
V
G
AKK
D
E
L
Q
S
T
I
A
K
H
LA--------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
SP3
43.21
10%
-79
- C3 -
1TC3
-
TC3A_CAEEL
C:
[1-51]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PRGS
A
L
--
S
--
D
T
E
R
---
A
Q
-
L
D
V
M
--
K
-
L
L
--
N
--
V
-
S
-----
L
H
E
M
S
R
K
I
S
R
-----------
S
-----
R
-
H
C
I
R
V
Y
L
K
D
-
P
-
V
-------------------
S
Y
--------
G
T
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
42.58
10%
-76
* C3 *
1U78
-
TC3A_CAEEL
A:
[2-104]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PRGS
A
L
--
S
--
D
T
E
R
---
A
Q
-
L
D
V
M
--
K
-
L
L
--
N
--
V
-
S
-----
L
H
E
M
S
R
K
I
S
R
-----------
S
-----
R
-
H
C
I
R
V
Y
L
K
D
-
P
V
S
------------
Y
G
-----
T
S
KRAPRRKA
L
S
V
R
D
E
-
R
N
V
I
R
A
A
S
N
-
S
-
C
K
-------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ACDALQLSP
C
A
S
A
I
IGNASP
S
A
S
C
C
S
R
M
K
EQQ
P
C
L
C
Q
YARDP
N
L
Q
R
Y
VNSPNG
K
K
V
L
A
A
CHVPVPSC
42
96.67
100%
-115
- C- -
M042
-
A:
[1-89]
A
C
D
A
L
Q
L
S
P
C
A
S
A
I
I
G
N
A
S
P
S
A
S
C
C
S
R
M
K
E
Q
Q
P
C
L
C
Q
Y
A
R
D
P
N
L
Q
R
Y
V
N
S
P
N
G
K
K
V
L
A
A
C
H
V
P
V
P
S
C
41
91.96
100%
-111
- C- -
M041
-
A:
[1-89]
A
C
D
A
L
Q
L
S
P
C
A
S
A
I
I
G
N
A
S
P
S
A
S
C
C
S
R
M
K
E
Q
Q
P
C
L
C
Q
Y
A
R
D
P
N
L
Q
R
Y
V
N
S
P
N
G
K
K
V
L
A
A
C
H
V
P
V
P
S
C