@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 121_tII_ORYSA: (2014-05-01 )
QSPPPPQCDPGLLSPCAAPIFFGTAPSASCCSSLKAQQGCFCQYAKDPMYASYINSTNARKMIAACGIPLPNCG
Atome Classification :
(20 SA)
-----------------------------------------------------------......--..--.--10--..-----..-....20-.-.-------------.--.--.-.-----...30....-----------.-----------.-.-.40......-..------------50-----..--...------...-60........-70---------..-----.--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------QSPPPP--QC--D--PG--LL-----SP-CAA
P
I
--
F
-F-------------G--T--A-P-----
S
A
S
C
C
S
S
L
K
-----------A-----------Q-Q-
G
C
F
CQYAKD-
P
M
------------
Y
A
-----
S
Y--INS------TN
A
-
R
K
M
I
A
ACGIP-LP---------NC-----G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
90.94
57%
-140
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
--
G
C
--
N
--
A
G
--
Q
L
-----
T
V
-
C
T
G
A
I
--
A
-
G
-------------
G
--
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
-----------
A
-----------
Q
-
Q
-
G
C
F
C
Q
F
A
K
D
-
P
R
------------
Y
G
-----
R
Y
--
V
N
S
------
P
N
A
-
R
K
A
V
S
S
C
G
I
A
-
L
P
---------
T
C
-----
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
90.57
56%
-140
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
--
G
C
--
N
--
A
G
--
Q
L
-----
T
V
-
C
T
G
A
I
--
A
-
G
-------------
G
--
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
-----------
A
-----------
Q
-
Q
-
G
C
F
C
Q
F
A
K
D
-
P
R
------------
Y
G
-----
R
Y
--
V
N
S
------
P
N
A
-
R
K
A
V
S
S
C
G
I
A
-
L
P
---------
T
C
-----
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
SP3
89.09
52%
-140
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
--
G
C
--
N
--
A
G
--
Q
L
-----
T
V
-
C
T
G
A
I
--
A
-
G
-------------
G
--
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
-----------
A
-----------
Q
-
Q
-
G
C
F
C
Q
F
A
K
D
-
P
R
------------
Y
G
-----
R
Y
--
V
N
S
------
P
N
A
-
R
K
A
V
S
S
C
G
I
A
-
L
P
---------
T
C
-----
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
87.11
51%
-139
- C4 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
-------------------------------------------------------------------
A
C
--
Q
--
A
S
--
Q
L
-----
A
V
-
C
A
S
A
I
--
L
-
S
-------------
G
--
A
--
K
-
P
-----
S
G
E
C
C
G
N
L
R
-----------
A
-----------
Q
-
Q
-
G
C
F
C
Q
Y
A
K
D
-
P
T
------------
Y
G
-----
Q
Y
--
I
R
S
------
P
H
A
-
R
D
T
L
T
S
C
G
L
A
-
V
P
---------
H
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
74.74
27%
-135
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------
A
I
D
--
L
C
GM
S
--
Q
D
--
E
L
-----
N
E
-
C
K
P
A
V
--
S
-
K
-------------
E
NP
T
--
S
-
P
-----
S
Q
P
C
C
T
A
L
Q
H
----------
A
-----------
D
-
F
-
A
C
L
C
G
Y
K
N
S
-
P
W
------------
L
G
-----
S
F
G-
V
D
P
------
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
-
N
A
P--------
T
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
73.54
25%
-123
- C4 -
2RKN
2
DIRL1_ARATH
A:
[4-77]
-------------------------------------------------------------------
L
C
--
G
MS
Q
D
--
E
L
-----
N
E
-
C
K
P
A
V
--
S
-
K
-------------
E
--
N
PT
S
-
P
-----
S
Q
P
C
C
T
A
L
Q
-----------
H
-----------
A
-
D
F
A
C
L
C
G
Y
K
N
S
-
P
W
------------
L
G
-----
S
F
G-
V
D
P
------
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
-
N
A
P--------
T
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
72.12
32%
-119
* C4 *
1T12
-
NLTP1_TOBAC
A:
[2-78]
----------------------------------------------------------------
I
--
T
C
--
G
--
Q
V
T
S
N
L
-----
A
P
-
C
L
A
Y
L
--
R
-
N
-------------
T
--
G
----
P
-----
L
G
R
C
C
G
G
V
K
-----------
A
L
V
N
S
A
RT
T
E
D
R
Q
-
I
-
A
C
T
C
--
L
K
S
-
A
A
-------------
G
-----
A
I
SG
I
N
L
------
G
K
A
-
A
G
L
P
S
T
C
G
V
N
-
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
69.94
32%
-109
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
----------------------------------------------------------------
I
--
T
C
--
G
--
Q
V
S
S
S
L
-----
A
P
-
C
I
P
Y
V
--
R
-
G
-------------
G
--
G
--
A
-
V
-----
P
P
A
C
C
N
G
I
R
-----------
N
V
N
N
L
A
RT
T
P
D
R
Q
-
A
-
A
C
N
C
--
L
K
Q
-
L
S
-------------
A
-----
S
V
PG
V
N
P
------
N
N
A
-
A
A
L
P
G
K
C
G
V
S
-
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
67.15
30%
-122
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
--------------------------------------------------------------------------
Q
G
--
N
L
-----
A
Q
-
C
I
G
F
L
--
Q
-
K
-------------
G
--
G
--
V
-
V
-----
P
P
S
C
C
T
G
V
K
-----------
N
I
L
NSSRTTADR
R
-
A
-
V
C
S
C
L
K
A
A
A
-
G
A
------------
V
R
------
G
--
I
N
P
------
N
N
A
-
E
A
L
P
G
K
C
G
V
N
-
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
SP3
65.53
24%
-112
- C4 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------
A
I
--
S
C
--
G
Q
V
A
S
--
A
I
-----
A
P
-
C
I
S
Y
A
--
R
-
G
-------------
Q
--
G
--
S
G
P
-----
S
A
G
C
C
S
G
V
R
-----------
S
-----------
L
-
N
-
N
A
----
A
R
T
-
T
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
-----
G
V
SG
L
N
A
------
G
N
A
-
A
S
I
P
S
K
C
G
V
S
-
I
P
YTISTST--
D
C
-----
S
RVN-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
64.94
30%
-125
- C4 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
----------------------------------------------------------------
I
--
S
C
--
G
--
Q
V
A
S
A
I
-----
A
P
-
C
I
S
Y
A
--
R
-
G
-------------
Q
--
G
--
S
G
P
-----
S
A
G
C
C
S
G
V
R
-----------
S
L
N
N
A
A
RT
T
A
D
R
R
-
A
-
A
C
N
C
--
L
K
N
-
A
A
-------------
A
-----
G
V
SG
L
N
A
------
G
N
A
-
A
S
I
P
S
K
C
G
V
S
-
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
63.44
33%
-98
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
--------------------------------------------------------------------------
D
S
--
L
V
-----
R
P
-
C
L
S
Y
V
--
Q
-
G
-------------
G
--
P
--
G
-
P
-----
S
G
Q
C
C
D
G
V
K
-----------
N
L
H
N
Q
ARS
Q
S
D
R
Q
-
S
-
A
C
N
C
L
K
G
I
A
-
R
G
------------
I
H
------
N
--
L
N
E
------
D
N
A
-
R
S
I
P
P
K
C
G
V
N
-
L
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
61.07
25%
-131
- C4 -
1HYP
-
HPSE_SOYBN
A:
[6-73]
----------------------------------------------------------------
P
--
S
C
--
P
------
D
L
-----
S
I
-
C
L
N
I
L
GG
S
-
L
-------------
G
--
T
----------
V
D
D
C
C
A
L
I
G
-----------
G
LG
D
I
E
------
A
-
I
-
V
C
L
C
I
Q
L
R
A
---------------
L
G
-----
I
---
L
N
L
------
N
R
N
L
Q
L
I
L
N
S
C
G
R
S
-
Y
P
---------
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
57.86
27%
-103
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
----------------------------------------------------------------
I
--
D
C
--
G
H
V
D
S
--
L
V
-----
R
P
-
C
L
S
Y
V
--
Q
G
G
-------------
P
-----
G
-
P
-----
S
G
Q
C
C
D
G
V
K
N
L
H
N
Q
ARS
Q
S
D
R
-----------
Q
-
S
-
A
C
N
C
L
K
G
I
A
-
R
G
------------
I
H
-----
N
L
--
N
-
E
------
D
N
A
-
R
S
I
P
P
K
C
G
---
V
N
LP
Y
T
I
S
LNI
D
C
-----
S
RV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
SP3
56.59
20%
-93
- C4 -
1KNG
-
CYCY_BRADU
A:
[50-193]
---------------------------------------------------RPAPQ
T
A
L
P
P
L
E
G
L
--
Q
A
--
D
--
N
V
--
Q
V
-----
P
G
-
L
D
P
A
A
--
F
-
K
-------------
G
-----
K
-
V
S
L
V
N
V
W
A
S
W
C
V
P
C
H
-----------
D
-----------
E
-
A
-
P
L
L
T
E
L
G
K
D
-
K
R
------------
F
Q
L
V
G
I
N
Y
K
--
D
A
A
------
D
N
A
-
R
R
F
L
G
R
Y
G
N
P
-
F
G
---------
R
V
-----
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L---------------------------------------------------------------------------------------------------------------------------------------------
3
Fugue
54.16
14%
-103
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--------------------------------------------------------P
Y
G
R
G
R
T
E
S
--
G
C
--
Y
--
Q
Q
--
M
E
E
A
EML
N
H
-
C
G
M
Y
L
--
M
-
K
NLGERSQVSPR
M
R
E
--
E
--
D
-
H
-----
K
Q
L
C
C
M
Q
L
K
-----------
N
L----------
D
-
E
-
K
C
M
C
P
A
I
M
M
-
M
L
------------
N
E
-----
P
M
--
W
I
R
MR
D
Q
V
M
S
M
A
-
H
N
L
P
I
E
C
N
L
M
-
S
Q
---------
P
C
-----
Q
M-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
SP3
50.24
12%
-95
- C4 -
1F9M
-
TRXF_SPIOL
A:
[10-121]
----------------------------------------------------------M
E
A
I
V
G
K
V
T
E
V
--
N
--
K
D
--
T
F
-----
W
----
P
I
V
--
K
A
A
-------------
G
--
D
--
K
-
P
V
V
L
D
M
F
T
Q
W
C
G
P
C
K
-----------
A
-----------
M
-
A
-
P
K
Y
E
K
L
A
E
E
Y
L
D
V
I
----------
F
L
-----
K
L
--
D
C
N
------
Q
E
N
-
K
T
L
A
K
E
L
G
I
R
V
V
P
---------
T
F
K
I
L
K
E
N
SVV
G
E
V
T
G
AK
Y
D
K
L
L
E
A
I
Q
A
A
R
S---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
SP3
49.49
14%
-107
- C4 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
YS
P
N
S
P
A
Q
--
P
Q
--
T
--
A
G
--
T
L
T
L
L--
P
V
-
A
L
R
A
P
--
V
-
T
-------------
A
--
G
--
Q
-
L
-----
A
V
E
N
G
H
Y
V
V
-----------
E
-----------
T
-
L
-
A
R
A
C
D
G
C
L
N
-
G
E
------------
F
A
-----
A
L
--
I
T
G
------
P
V
H
-
K
G
V
I
N
D
A
G
I
P
-
F
T
----------------
G
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
14
SP3
47.60
12%
-101
- C4 -
1U78
-
TC3A_CAEEL
A:
[2-104]
-------------------------------------------------------------
P
R
G
S
--
A
L
--
S
--
D
T
--
E
R
-----
A
Q
--
L
D
V
M
--
K
-
L
-------------
L
--
N
--
V
-
S
-----
L
H
E
M
S
R
K
I
S
-----------
R
-----------
S
-
R
-
H
C
I
R
V
Y
L
K
D
-
P
V
SYGTSKRAP---
R
R
-----
K
A
--
L
S
V
------
R
D
E
-
R
N
V
I
R
A
A
S
N
S
-
C
K
---------
T
A
-----
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
Fugue
45.47
14%
-75
- C4 -
1UFW
-
A:
[1-95]
-------------------------------------------------GS
S
G
S
S
G
S
S
F
Q
G
P
L
D
A
--
T
V
--
V
--
V
N
--
L
Q
-----
S
P
T
L
E
E
K
N
--
E
-
F
-------------
P
--
E
--
D
-
L
-----
R
T
E
L
M
Q
T
L
G
-----------
S
-----------
Y
G
T
-
I
V
L
V
R
I
N
Q
G
-
Q
M
------------
L
V
-----
T
F
--
A
D
S
------
H
S
A
-
L
S
V
L
D
V
D
G
M
K
-
V
K
---------
G
R
-----
A
V
K
I
S
G
PSSG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70...
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
QSPPPPQCDPGLLSPCAA
P
I
F
FGTAP
S
A
S
C
C
S
S
L
K
AQQ
G
C
F
CQYAKD
P
M
Y
A
S
YINSTN
A
R
K
M
I
A
ACGIPLPNCG
42
50.51
100%
-35
- C- -
M042
-
A:
[5-109]
Q
S
P
P
P
P
Q
C
D
P
G
L
L
S
P
C
A
A
P
I
F
F
G
T
A
P
S
A
S
C
C
S
S
L
K
A
Q
Q
G
C
F
C
Q
Y
A
K
D
P
M
Y
A
S
Y
I
N
S
T
N
A
R
K
M
I
A
A
C
G
I
P
L
P
N
C
G
39
40.50
100%
-38
- C- -
M039
-
A:
[6-96]
Q
S
P
P
P
P
Q
C
D
P
G
L
L
S
P
C
A
A
P
I
F
F
G
T
A
P
S
A
S
C
C
S
S
L
K
A
Q
Q
G
C
F
C
Q
Y
A
K
D
P
M
Y
A
S
Y
I
N
S
T
N
A
R
K
M
I
A
A
C
G
I
P
L
P
N
C
G