@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 122_tII_ORYSA: (2014-05-01 )
QAPPPPPQCDPGLLSPCAAPIFFGTAPSASCCSSLKAQQGCFCQYAKDPTYASYINSTNARKMIAACGIPFPNCS
Atome Classification :
(20 SA)
----------------------------------------------------------....------.....--10-..--..-----.....20-----------.-.-------------.--.--.-.-----..30.....-----------.-----------.-----.-40.......------.50-----------..-----..--.-....60.........70..---------...------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------QAPP------PPPQC--D--PG--LL-----SPCAA
P
I
-----------
F
-F-------------G--T--A-P-----
S
A
S
C
C
S
S
L
K
-----------A-----------Q-----Q-
G
C
F
C
Q
YAKD------P
T
------------
Y
A
-----
S
Y--I-NSTN
A
-
R
K
M
I
A
ACGIP-FP---------NCS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
95.11
52%
-142
- C4 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
-----------------------------------------------------------------------
A
C
--
Q
--
A
S
--
Q
L
-----
A
V
C
A
S
A
I
-----------
L
-
S
-------------
G
--
A
--
K
-
P
-----
S
G
E
C
C
G
N
L
R
-----------
A
-----------
Q
-----
Q
-
G
C
F
C
Q
Y
A
K
D
------
P
T
------------
Y
G
-----
Q
Y
--
I
-
R
S
P
H
A
-
R
D
T
L
T
S
C
G
L
A
-
V
P
---------
H
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
92.53
55%
-141
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------------
A
G
C
--
N
--
A
G
--
Q
L
-----
T
V
C
T
G
A
I
-----------
A
-
G
-------------
G
--
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
-----------
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
D
------
P
R
------------
Y
G
-----
R
Y
--
V
-
N
S
P
N
A
-
R
K
A
V
S
S
C
G
I
A
-
L
P
---------
T
C
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
92.53
55%
-141
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------------
A
G
C
--
N
--
A
G
--
Q
L
-----
T
V
C
T
G
A
I
-----------
A
-
G
-------------
G
--
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
-----------
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
D
------
P
R
------------
Y
G
-----
R
Y
--
V
-
N
S
P
N
A
-
R
K
A
V
S
S
C
G
I
A
-
L
P
---------
T
C
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
SP3
90.55
50%
-141
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------------
A
G
C
--
N
--
A
G
--
Q
L
-----
T
V
C
T
G
A
I
-----------
A
-
G
-------------
G
--
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
-----------
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
D
------
P
R
------------
Y
G
-----
R
Y
--
V
-
N
S
P
N
A
-
R
K
A
V
S
S
C
G
I
A
-
L
P
---------
T
C
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
75.32
27%
-129
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------------
A
I
D
L
C
GM
S
--
Q
D
--
E
L
-----
N
E
C
K
P
A
V
-----------
S
-
K
-------------
E
NP
T
--
S
-
P
-----
S
Q
P
C
C
T
A
L
Q
H
----------
A
-----------
D
-----
F
-
A
C
L
C
G
Y
K
N
S
------
P
W
------------
L
G
-----
S
F
G-
V
-
D
P
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
-
N
A
P--------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
71.70
25%
-116
- C4 -
2RKN
2
DIRL1_ARATH
A:
[4-77]
-----------------------------------------------------------------------
L
C
--
G
MS
Q
D
--
E
L
-----
N
E
C
K
P
A
V
-----------
S
-
K
-------------
E
--
N
PT
S
-
P
-----
S
Q
P
C
C
T
A
L
Q
-----------
H
-----------
A
-----
D
F
A
C
L
C
G
Y
K
N
S
------
P
W
------------
L
G
-----
S
F
G-
V
-
D
P
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
-
N
A
P--------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
71.06
32%
-112
- C4 -
1T12
-
NLTP1_TOBAC
A:
[2-78]
----------------------------------------------------------------------
I
T
C
--
G
--
Q
V
T
S
N
L
-----
A
P
C
L
A
Y
L
-----------
R
-
N
-------------
T
--
G
----
P
-----
L
G
R
C
C
G
G
V
K
-----------
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
C
T
C
--
L
K
S
------
A
A
-------------
G
-----
A
I
SG
I
-
N
L
G
K
A
-
A
G
L
P
S
T
C
G
V
N
-
I
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
70.63
32%
-103
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
----------------------------------------------------------------------
I
T
C
--
G
--
Q
V
S
S
S
L
-----
A
P
C
I
P
Y
V
-----------
R
-
G
-------------
G
--
G
--
A
-
V
-----
P
P
A
C
C
N
G
I
R
-----------
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
C
N
C
--
L
K
Q
------
L
S
-------------
A
-----
S
V
PG
V
-
N
P
N
N
A
-
A
A
L
P
G
K
C
G
V
S
-
I
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
SP3
67.19
25%
-109
* C4 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------------
A
I
S
C
--
G
Q
V
A
S
--
A
I
-----
A
P
C
I
S
Y
A
-----------
R
-
G
-------------
Q
--
G
--
S
G
P
-----
S
A
G
C
C
S
G
V
R
-----------
S
-----------
L
-----
N
-
N
A
----
A
R
T
------
T
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
-----
G
V
SG
L
-
N
A
G
N
A
-
A
S
I
P
S
K
C
G
V
S
-
I
P
YTISTST--
D
C
S
RVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
66.20
30%
-115
- C4 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
----------------------------------------------------------------------
I
S
C
--
G
--
Q
V
A
S
A
I
-----
A
P
C
I
S
Y
A
-----------
R
-
G
-------------
Q
--
G
--
S
G
P
-----
S
A
G
C
C
S
G
V
R
-----------
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
C
N
C
--
L
K
N
------
A
A
-------------
A
-----
G
V
SG
L
-
N
A
G
N
A
-
A
S
I
P
S
K
C
G
V
S
-
I
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
65.87
30%
-113
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
------------------------------------------------------------------------------
Q
G
--
N
L
-----
A
Q
C
I
G
F
L
-----------
Q
-
K
-------------
G
--
G
--
V
-
V
-----
P
P
S
C
C
T
G
V
K
-----------
N
I
L
NSSRTTADR
R
-----
A
-
V
C
S
C
L
K
A
A
A
------
G
A
------------
V
R
------
G
--
I
-
N
P
N
N
A
-
E
A
L
P
G
K
C
G
V
N
-
I
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
63.21
29%
-105
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
----------------------------------------------------------------------
I
D
C
--
G
H
V
D
S
--
L
V
-----
R
P
C
L
S
Y
V
-----------
Q
G
G
-------------
P
-----
G
-
P
-----
S
G
Q
C
C
D
G
V
K
N
L
H
N
Q
ARS
Q
S
D
R
-----------
Q
-----
S
-
A
C
N
C
L
K
G
I
A
------
R
G
------------
I
H
-----
N
L
--
N
--
E
D
N
A
-
R
S
I
P
P
K
C
G
---
V
N
LP
Y
T
I
S
LNI
D
C
S
RV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
62.64
31%
-97
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
------------------------------------------------------------------------------
D
S
--
L
V
-----
R
P
C
L
S
Y
V
-----------
Q
-
G
-------------
G
--
P
--
G
-
P
-----
S
G
Q
C
C
D
G
V
K
-----------
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
C
N
C
L
K
G
I
A
------
R
G
------------
I
H
------
N
--
L
-
N
E
D
N
A
-
R
S
I
P
P
K
C
G
V
N
-
L
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
61.51
25%
-133
- C4 -
1HYP
-
HPSE_SOYBN
A:
[6-73]
----------------------------------------------------------------------
P
S
C
--
P
------
D
L
-----
S
I
C
L
N
I
L
GG---------
S
-
L
-------------
G
--
T
----------
V
D
D
C
C
A
L
I
G
-----------
G
-----------
L
G
D
I
E
A
I
-
V
C
L
C
I
Q
L
R
A
--------------------
L
G
-----
I
---
L
-
N
L
N
R
N
L
Q
L
I
L
N
S
C
G
R
S
-
Y
P
---------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
59.49
22%
-106
- C4 -
1KNG
-
CYCY_BRADU
A:
[50-193]
---------------------------------------------------------R
P
A
P
Q
T
A
L
P
P
L
E
G
L
Q
A
--
D
--
N
V
--
Q
V
-----
P
G
L
D
P
A
A
-----------
F
-
K
-------------
G
-----
K
-
V
S
L
V
N
V
W
A
S
W
C
V
P
C
H
-----------
D
-----------
E
-----
A
-
P
L
L
T
E
L
G
K
D
------
K
R
------------
F
Q
L
V
G
I
N
Y
K
--
D
-
A
A
D
N
A
-
R
R
F
L
G
R
Y
G
N
P
-
F
G
---------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L-------------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
52.10
14%
-76
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--------------------------------------------------------P
Y
G
R
G
R
------
T
E
S
G
C
--
Y
--
Q
Q
--
M
E
E
A
EML
N
H
C
G
M
Y
L
-----------
M
-
K
NLGERSQVSPR
M
R
E
--
E
--
D
-
H
-----
K
Q
L
C
C
M
Q
L
K
-----------
N
L----------
D
-----
E
-
K
C
M
C
P
A
I
M
M
M
L
N
EPM
W
I
------------
R
M
-----
R
D
--
Q
-
V
M
S
M
A
-
H
N
L
P
I
E
C
N
L
M
-
S
Q
---------
P
C
Q
M-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
50.37
12%
-102
- C4 -
1U78
-
TC3A_CAEEL
A:
[2-104]
-------------------------------------------------------------
P
------
R
G
S
A
L
--
S
--
D
T
--
E
R
-----
A
Q
-
L
D
V
M
-----------
K
-
L
-------------
L
--
N
--
V
-
S
-----
L
H
E
M
S
R
K
I
S
-----------
R
-----------
S
-----
R
-
H
C
I
R
V
Y
L
K
D
------
P
V
SYGTSKRAP---
R
R
-----
K
A
--
L
-
S
V
R
D
E
-
R
N
V
I
R
A
A
S
N
S
-
C
K
---------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
SP3
46.57
14%
-86
- C4 -
1KFS
-
A:
[1-195]
----------------------------------MISYDN
Y
V
T
I
LD
E
E
T
L
K
A
W
I
A
K
L
E
K
A
P
V
F
A
F
D
T
-
E
T
D
S
L
--
D
--
N
I
--
S
A
-----
N
L
V
G
L
S
F
A
IEPG
V
A
A
Y
I
P
V
-
A
-------------
H
--
D
--
Y
-
L
-----
D
A
P
D
Q
I
S
R
E
-----------
R
-----------
A
-----
L
-
E
L
L
K
P
L
L
E
D
------
E
K
------------
A
L
-----
K
V
--
G
Q
N
L
K
Y
D
-
R
G
I
L
A
N
Y
G
I
E
-
L
R
---------
G
I
A
FD
T
M
L
E
S
Y
I
L
NSVAGRHD
M
D
S
L
A
E
R
WLKHKTITFEEI
A
G
K
G
KNQLTFNQIA
L
E
E
A
G
R
Y
A
A
E
D
A
D
V
T
L
Q
L
H
L
K
M
W
P
D
L
Q
K-----------------------------------------------------------------------------------------------------------------
26
SP3
44.47
14%
-105
- C4 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
Y
S
P
N
S
------
P
A
Q
P
Q
--
T
--
A
G
--
T
L
T
L
L--
P
V
A
L
R
A
P
-----------
V
-
T
-------------
A
--
G
--
Q
-
L
-----
A
V
E
N
G
H
Y
V
V
-----------
E
-----------
T
-----
L
-
A
R
A
C
D
G
C
L
N
------
G
E
------------
F
A
-----
A
L
--
I
-
T
G
P
V
H
-
K
G
V
I
N
D
A
G
I
P
-
F
T
---------
G
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
29
SP3
41.72
12%
-78
- C4 -
1F9M
-
TRXF_SPIOL
A:
[10-121]
--------------------------------------------------------ME
A
I
V
G
------
K
V
T
E
V
--
N
--
K
D
--
T
F
-----
W
---
P
I
V
-----------
K
A
A
-------------
G
--
D
--
K
-
P
V
V
L
D
M
F
T
Q
W
C
G
P
C
K
-----------
A
-----------
M
-----
A
-
P
K
Y
E
K
L
A
E
E
Y
-----
L
D
V
I
----------
F
L
-----
K
L
--
D
-
C
N
Q
E
N
-
K
T
L
A
K
E
L
G
I
R
V
V
P
---------
T
F
K
I
L
K
ENSVV
G
E
V
T
G
AK
Y
D
K
L
L
E
A
I
Q
A
A
R
S--------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
QAPPPPPQCDPGLLSPCAA
P
I
F
FGTAP
S
A
S
C
C
S
S
L
K
AQQ
G
C
F
C
Q
YAKDP
T
Y
A
S
YINSTN
A
R
K
M
I
A
ACGIPFPNCS
40
55.84
100%
-46
- C- -
M040
-
A:
[4-102]
Q
A
P
P
P
P
P
Q
C
D
P
G
L
L
S
P
C
A
A
P
I
F
F
G
T
A
P
S
A
S
C
C
S
S
L
K
A
Q
Q
G
C
F
C
Q
Y
A
K
D
P
T
Y
A
S
Y
I
N
S
T
N
A
R
K
M
I
A
A
C
G
I
P
F
P
N
C
S
41
55.31
100%
-45
- C- -
M041
-
A:
[4-102]
Q
A
P
P
P
P
P
Q
C
D
P
G
L
L
S
P
C
A
A
P
I
F
F
G
T
A
P
S
A
S
C
C
S
S
L
K
A
Q
Q
G
C
F
C
Q
Y
A
K
D
P
T
Y
A
S
Y
I
N
S
T
N
A
R
K
M
I
A
A
C
G
I
P
F
P
N
C
S