@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 126_tII_ORYSA: (2014-05-01 )
AVVPPSRCNPTLLTPCAGPALFGGPVPPACCAQLRAQAACLCAYARSPNYGSYIRSPNARRLFAVCGLPMPQCS
Atome Classification :
(20 SA)
-----------------------------------------------------------.........--10------.--..---....-----..20-----....--.-.-----..--.30....---.-----------.-----.-.40.....-.------.-.------------50..--------.-----..---...-60........70-------...------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------AVVPPSRCN--P-------
T
--
L
L---TPCA-----
G
P
A------LFGG--P-V-----
P
P
--
A
C
C
A
Q
L
R
---
A
-----------
Q
-----
A
-
A
C
L
C
A
YAR-S------P-N------------YGSY--------I-----RS---PNA-
R
R
L
F
A
VCGLPMP-------QCS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
92.72
46%
-150
- C6 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
-----------------------------------------------------------------
A
C
Q
--
A
-------
S
--
Q
L
---
A
V
C
A
-----
S
A
I
------
L
S
G
A
--
K
-
P
-----
S
G
--
E
C
C
G
N
L
R
---
A
-----------
Q
-----
Q
-
G
C
F
C
Q
Y
A
K
-
D
------
P
-
T
------------
Y
G
Q
Y
--------
I
-----
R
S
---
P
H
A
-
R
D
T
L
T
S
C
G
L
A
V
P
-------
H
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
84.21
43%
-131
- C6 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
N
--
A
-------
G
--
Q
L
---
T
V
C
T
-----
G
A
I
------
A
G
G
A
--
R
-
P
-----
T
A
--
A
C
C
S
S
L
R
---
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
-
D
------
P
-
R
------------
Y
G
R
Y
--------
V
-----
N
S
---
P
N
A
-
R
K
A
V
S
S
C
G
I
A
L
P
-------
T
C
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
84.21
43%
-131
- C6 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
N
--
A
-------
G
--
Q
L
---
T
V
C
T
-----
G
A
I
------
A
G
G
A
--
R
-
P
-----
T
A
--
A
C
C
S
S
L
R
---
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
-
D
------
P
-
R
------------
Y
G
R
Y
--------
V
-----
N
S
---
P
N
A
-
R
K
A
V
S
S
C
G
I
A
L
P
-------
T
C
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
SP3
82.77
40%
-131
- C6 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
N
--
A
-------
G
--
Q
L
---
T
V
C
T
-----
G
A
I
------
A
G
G
A
--
R
-
P
-----
T
A
--
A
C
C
S
S
L
R
---
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
-
D
------
P
-
R
------------
Y
G
R
Y
--------
V
-----
N
S
---
P
N
A
-
R
K
A
V
S
S
C
G
I
A
L
P
-------
T
C
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
73.99
34%
-143
- C6 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------
A
I
D
L
C
G
MS
Q
-------
D
--
E
L
---
N
E
C
K
-----
P
A
V
------
S
K
E
N
--
P
-
T
-----
S
P
S
Q
P
C
C
T
A
L
Q
H
--
A
-----------
D
-----
F
-
A
C
L
C
G
Y
K
N
-
S
------
P
-
W
------------
L
G
S
F
G-------
V
-----
D
P
---
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
73.33
40%
-120
- C6 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
----------------------------------------------------------------
I
T
C
G
--
Q
-------
V
S
S
S
L
---
A
P
C
I
-----
P
Y
V
------
R
G
G
G
--
A
-
V
-----
P
P
--
A
C
C
N
G
I
R
---
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
C
N
C
--
L
K
-
Q
------
L
-
S
-------------
A
S
V
PG------
V
-----
N
P
---
N
N
A
-
A
A
L
P
G
K
C
G
V
S
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
71.71
27%
-138
- C6 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
----------------------------------------------------------------
I
S
C
G
--
Q
-------
V
A
S
A
I
---
A
P
C
I
-----
S
Y
A
------
R
G
Q
G
--
S
G
P
-----
S
A
--
G
C
C
S
G
V
R
---
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
C
N
C
--
L
K
-
N
------
A
-
A
-------------
A
G
V
SG------
L
-----
N
A
---
G
N
A
-
A
S
I
P
S
K
C
G
V
S
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
71.61
31%
-146
- C6 -
2RKN
2
DIRL1_ARATH
A:
[4-77]
-----------------------------------------------------------------
L
C
G
MS
Q
-------
D
--
E
L
---
N
E
C
K
-----
P
A
V
------
S
K
E
N
PT
S
-
P
-----
S
Q
--
P
C
C
T
A
L
Q
---
H
-----------
A
-----
D
F
A
C
L
C
G
Y
K
N
-
S
------
P
-
W
------------
L
G
S
F
G-------
V
-----
D
P
---
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
70.57
34%
-130
- C6 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
----------------------------------------------------------------------
Q
-------
G
--
N
L
---
A
Q
C
I
-----
G
F
L
------
Q
K
G
G
--
V
-
V
-----
P
P
--
S
C
C
T
G
V
K
---
N
I
L
NSSRTTADR
R
-----
A
-
V
C
S
C
L
K
A
A
-
A
------
G
-
A
------------
V
R
-
G
--------
I
-----
N
P
---
N
N
A
-
E
A
L
P
G
K
C
G
V
N
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
70.32
22%
-125
* C6 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------
A
I
S
C
G
Q
V
A
-------
S
--
A
I
---
A
P
C
I
-----
S
Y
A
------
R
G
Q
G
--
S
G
P
-----
S
A
--
G
C
C
S
G
V
R
---
S
-----------
L
-----
N
-
N
A
----
A
R
-
T
------
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
G
V
SG------
L
-----
N
A
---
G
N
A
-
A
S
I
P
S
K
C
G
V
S
I
P
YTISTST
D
C
S
RVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
63.92
27%
-134
- C6 -
1BWO
2
NLTP1_WHEAT
A:
[8-78]
------------------------------------------------------------------------------
S
--
L
V
---
R
P
C
L
-----
S
Y
V
------
Q
G
G
P
--
G
-
P
-----
S
G
--
Q
C
C
D
G
V
K
---
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
C
N
C
L
K
G
I
-
A
------
R
-
G
------------
I
H
-
N
--------
L
-----
N
E
---
D
N
A
-
R
S
I
P
P
K
C
G
V
N
L
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
63.89
32%
-108
- C6 -
1T12
-
NLTP1_TOBAC
A:
[2-78]
----------------------------------------------------------------
I
T
C
G
--
Q
-------
V
T
S
N
L
---
A
P
C
L
-----
A
Y
L
------
R
N
T
G
----
P
-----
L
G
--
R
C
C
G
G
V
K
---
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
C
T
C
--
L
K
-
S
------
A
-
A
-------------
G
A
I
SG------
I
-----
N
L
---
G
K
A
-
A
G
L
P
S
T
C
G
V
N
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
63.06
16%
-133
- C6 -
1KNG
-
CYCY_BRADU
A:
[50-193]
---------------------------------------------------RPAPQ
T
A
L
P
P
L
E
G
L
Q
A
D
--
N
-------
V
--
Q
V
---
P
G
L
D
-----
P
A
A
------
F
K
G
---
K
-
V
S
L
V
N
V
W
A
--
S
W
C
V
P
C
H
---
D
-----------
E
-----
A
-
P
L
L
T
E
L
G
K
-
D
------
K
-
R
------------
F
Q
L
V
--------
G
I
N
Y
KD
A
A
---
D
N
A
-
R
R
F
L
G
R
Y
G
N
P
F
G
-------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L-------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
61.39
24%
-136
- C6 -
1HYP
-
HPSE_SOYBN
A:
[6-73]
----------------------------------------------------------------
P
S
C
P
-------------
D
L
---
S
I
C
L
-----
N
I
L
GG----
S
L
G
T
----------
V
D
--
D
C
C
A
L
I
G
---
G
-----------
L
G
D
I
E
A
I
-
V
C
L
C
I
Q
L
R
-
A
---------------------
L
G
I
---------
L
-----
N
L
---
N
R
N
L
Q
L
I
L
N
S
C
G
R
S
Y
P
-------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
SP3
58.06
13%
-142
- C6 -
1LU4
-
A:
[1001-1134]
--------------------------------------------------ADERLQ
F
T
A
T
T
L
S
G
A
P
F
D
--
G
-------
A
--
S
L
---
Q
G
K
P
-----
A
V
L
------
W
F
W
T
--
P
------------
W
C
P
F
C
N
---
A
-----------
E
-----
A
-
P
S
L
S
Q
V
A
A
A
N
------
P
-
A
------------
V
T
F
V
--------
G
I
A
T
RA
D
V
---
G
A
M
-
Q
S
F
V
S
K
Y
N
L
N
F
T
-------
N
L
N
DADG
V
I
W
A
R
Y
NVPWQP
A
F
V
F
Y
R
ADG
T
S
T
F
V
N
N
PTAAMS
Q
D
E
L
S
G
R
V
A
A
L-----------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
49.68
18%
-103
- C6 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
E
A
E
M
L
N
H
C
G
--
M
-------
Y
--
L
M
---
K
N
L
G
ERSQV
S
P
R
------
M
R
E
E
--
D
-
H
-----
K
Q
--
L
C
C
M
Q
L
K
---
N
L----------
D
-----
E
-
K
C
M
C
P
A
I
M
-
M
M
L
N
EPM
W
-
I
------------
R
M
R
D
--------
Q
-----
V
M
---
S
M
A
-
H
N
L
P
I
E
C
N
L
M
S
Q
-------
P
C
Q
M-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
48.66
12%
-120
- C6 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
YS
P
N
S
P
A
Q
P
Q
T
--
A
-------
G
--
T
L
T
L
L
P
V
A
L
-----
R
A
P
------
V
T
A
G
--
Q
-
L
-----
A
V
--
E
N
G
H
Y
V
V
---
E
-----------
T
-----
L
-
A
R
A
C
D
G
C
L
-
N
------
G
-
E
------------
F
A
A
L
--------
I
-----
T
G
---
P
V
H
-
K
G
V
I
N
D
A
G
I
P
F
T
-------
G
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
21
Fugue
45.91
18%
-102
- C4 -
1MOL
-
MONB_DIOCU
A:
[1-94]
-----------------------------------------G
E
W
E
I
I
D
IG
P
F
T
Q
N
L
G
K
F
A
V
D
E
E
N
K
I
G
--
Q
Y
G
R
L
T
F
N
K
--
V
I
---
R
P
C
M
-----
K
K
T
------
I
Y
E
N
--
E
--------------
R
E
I
K
---
G
-----------
Y
-----
E
-
Y
Q
L
Y
V
Y
A
S
-
D
------
K
-
L
------------
F
R
A
D
--------
I
-----
S
E
D
YK
T
R
G
-
R
K
L
L
R
F
N
G
P
V
P
P
-------
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
41.97
19%
-113
* C4 *
2LU7
-
A:
[1-82]
---------------------------------------------------------MT
R
V
R
S
T
P
G
G
D
--
L
-------
E
--
L
V
---
V
H
L
S
-----
G
P
G
GP
V
R
W
Y
K
D
G
E
--
R
-
L
-----
A
S
--
Q
G
R
V
Q
L
E
Q
AG
A
-----------
R
-----
Q
-
V
L
R
V
Q
G
A
R
-
S
------
G
-
D
------------
A
G
E
Y
--------
L
-----
C
D
---
A
P
Q
-
D
S
R
I
F
L
V
S
V
E
E
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
40.59
10%
-113
- C6 -
1U78
-
TC3A_CAEEL
A:
[2-104]
-------------------------------------------------------------
P
R
G
S
A
L
S
--
D
-------
T
--
E
R
---
A
Q
-
L
-----
D
V
M
------
K
L
L
N
--
V
-
S
-----
L
H
--
E
M
S
R
K
I
S
---
R
-----------
S
-----
R
-
H
C
I
R
V
Y
L
K
-
D
------
P
V
S
------------
Y
G
T
S
KRAPRRKA
L
-----
S
V
---
R
D
E
-
R
N
V
I
R
A
A
S
N
S
C
K
-------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70...
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AVVPPSRCNP
T
L
LTPCA
G
P
ALFGGPV
P
P
A
C
C
A
Q
L
R
A
Q
A
A
C
L
C
A
YARSPNYGSYIRSPNA
R
R
L
F
A
VCGLPMPQCS
37
98.13
100%
-143
- C- -
M037
-
A:
[1-99]
A
V
V
P
P
S
R
C
N
P
T
L
L
T
P
C
A
G
P
A
L
F
G
G
P
V
P
P
A
C
C
A
Q
L
R
A
Q
A
A
C
L
C
A
Y
A
R
S
P
N
Y
G
S
Y
I
R
S
P
N
A
R
R
L
F
A
V
C
G
L
P
M
P
Q
C
S
39
97.40
100%
-162
- C- -
M039
-
A:
[1-119]
A
V
V
P
P
S
R
C
N
P
T
L
L
T
P
C
A
G
P
A
L
F
G
G
P
V
P
P
A
C
C
A
Q
L
R
A
Q
A
A
C
L
C
A
Y
A
R
S
P
N
Y
G
S
Y
I
R
S
P
N
A
R
R
L
F
A
V
C
G
L
P
M
P
Q
C
S