@TOME V2.3
(Nov 2016)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 128_tII_ARATH: (2014-05-02 )
KTLILGEEVKATCDFTKFQVCKPEIITGSPPSEECCEKLKEQQSCLCAYLISPSISQYIGNAKRVIRACGIPFPNCS
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------.........10-----...--..--...20---------...-----.--..-------------..---------30-------..-------------.......40-----------.---------.-......----------50.------------.---------------..------------...---.-------------60----------.--........-70...-------...-------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------KTLILGEEVKA-----TCD--FT--K
F
Q
VC---------KP
E
-----
I
--IT-------------GS---------P--------
P
S
-------------
E
E
C
C
E
K
L
K
E
-----------
Q
---------
Q
-
S
C
L
C
A
Y
----------LIS------------P---------------
S
I
------------
S
Q
Y
---
I
-------------
G
-----------
N
--
A
K
R
V
I
R
A
C-GIPFP-------NCS-------------------------------------------------------------
11
HHSearch
92.97
38%
-106
- C3 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
----------------------------------------------------------------------------------------------------------------
A
C
Q
--
A
S
--
Q
L
A
V
C
---------
A
S
A
-----
I
--
L
S
-------------
G
A
---------
K
--------
P
S
-------------
G
E
C
C
G
N
L
R
A
-----------
Q
---------
Q
-
G
C
F
C
Q
Y
----------
A
K
D
------------
P
---------------
T
Y
------------
G
Q
Y
---
I
-------------
R
S
P
---------
H
--
A
R
D
T
L
T
S
C
-
G
L
A
V
P
-------
H
C
--------------------------------------------------------------
13
HHSearch
86.35
29%
-101
- C3 -
2RKN
2
DIRL1_ARATH
A:
[4-77]
----------------------------------------------------------------------------------------------------------------
L
C
G
MS
Q
D
--
E
L
N
E
C
---------
K
P
A
-----
V
--
S
K
-------------
E
N
PT-------
S
--------
P
S
-------------
Q
P
C
C
T
A
L
Q
H
-----------
A
---------
D
F
A
C
L
C
G
Y
----------
K
N
S
------------
P
---------------
W
L
------------
G
S
F
G--
V
-------------
D
P
E
---------
L
--
A
S
A
L
P
K
Q
C
-
G
L
A
N
A
P------
T
C
--------------------------------------------------------------
12
HHSearch
85.36
34%
-104
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------------------------------------------------
A
-----
G
C
N
--
A
G
--
Q
L
T
V
C
---------
T
G
A
-----
I
--
A
G
-------------
G
A
---------
R
--------
P
T
-------------
A
A
C
C
S
S
L
R
A
-----------
Q
---------
Q
-
G
C
F
C
Q
F
----------
A
K
D
------------
P
---------------
R
Y
------------
G
R
Y
---
V
-------------
N
SP---------
N
--
A
R
K
A
V
S
S
C
-
G
I
A
L
P
-------
T
C
H
-------------------------------------------------------------
1
Fugue
85.36
34%
-104
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------------------------------------------------
A
-----
G
C
N
--
A
G
--
Q
L
T
V
C
---------
T
G
A
-----
I
--
A
G
-------------
G
A
---------
R
--------
P
T
-------------
A
A
C
C
S
S
L
R
A
-----------
Q
---------
Q
-
G
C
F
C
Q
F
----------
A
K
D
------------
P
---------------
R
Y
------------
G
R
Y
---
V
-------------
N
SP---------
N
--
A
R
K
A
V
S
S
C
-
G
I
A
L
P
-------
T
C
H
-------------------------------------------------------------
14
HHSearch
82.54
29%
-91
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
---------------------------------------------------------------------------------------------------------------------
D
S
--
L
V
R
P
C
---------
L
S
Y
-----
V
--
Q
G
-------------
G
P
---------
G
--------
P
S
-------------
G
Q
C
C
D
G
V
K
N
L
H
N
Q
ARS
Q
S
D
R
Q
---------
S
-
A
C
N
C
L
K
----------
G
I
A
------------
R
---------------
G
I
------------
H
-
N
---
L
-------------
N
E
D
---------
N
--
A
R
S
I
P
P
K
C
-
G
V
N
L
P
-----------------------------------------------------------------------
23
SP3
80.38
28%
-109
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------------------------------------------------
A
-----
G
C
N
--
A
G
--
Q
L
T
V
C
---------
T
G
A
-----
I
--
A
G
-------------
G
A
---------
R
--------
P
T
-------------
A
A
C
C
S
S
L
R
A
-----------
Q
---------
Q
-
G
C
F
C
Q
F
----------
A
K
D
------------
P
---------------
R
Y
------------
G
R
Y
---
V
-------------
N
-----------
S
PN
A
R
K
A
V
S
S
C
-
G
I
A
L
P
-------
T
C
H
-------------------------------------------------------------
15
HHSearch
79.82
28%
-89
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
----------------------------------------------------------------------------------------------------------
I
-----
T
C
G
--
Q
V
S
S
S
L
A
P
C
---------
I
P
Y
-----
V
--
R
G
-------------
G
G
---------
A
--------
V
P
-------------
P
A
C
C
N
G
I
R
N
V
N
N
L
A
RT
T
P
D
R
Q
---------
A
-
A
C
N
C
------------
L
K
Q
------------
L
---------------
S
-------------
A
S
V
PG-
V
-------------
N
P
N
---------
N
--
A
A
A
L
P
G
K
C
-
G
V
S
I
P
-----------------------------------------------------------------------
2
Fugue
79.72
27%
-81
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
------------------------------------------------------------------------------------------------------
A
I
D
L
C
-----
G
M
S
--
Q
D
--
E
L
N
E
C
---------
K
P
A
-----
V
--
S
K
-------------
E
N
---------
P
TS------
P
S
-------------
Q
P
C
C
T
A
L
Q
H
A----------
D
---------
F
-
A
C
L
C
G
Y
----------
K
N
S
------------
P
---------------
W
L
------------
G
S
F
GVD
P
-------------
E
-----------
L
--
A
S
A
L
P
K
Q
C
-
G
L
A
N
A
P------
T
C
--------------------------------------------------------------
19
HHSearch
79.33
28%
-97
- C3 -
1T12
-
NLTP1_TOBAC
A:
[2-78]
----------------------------------------------------------------------------------------------------------
I
-----
T
C
G
--
Q
V
T
S
N
L
A
P
C
---------
L
A
Y
-----
L
--
R
N
-------------
T
G
------------------
P
L
-------------
G
R
C
C
G
G
V
K
A
L
V
N
S
A
RT
T
E
D
R
Q
---------
I
-
A
C
T
C
------------
L
K
S
------------
A
---------------
A
-------------
G
A
I
SG-
I
-------------
N
L
G
---------
K
--
A
A
G
L
P
S
T
C
-
G
V
N
I
P
-----------------------------------------------------------------------
3
Fugue
71.53
14%
-91
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
---------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
-----
M
E
E
--
A
E
--
M
L
N
H
C
---------
G
M
Y
-----
L
--
M
K
NLGERSQVSPR
M
R
E
E
---------
D
--------
H
K
-------------
Q
L
C
C
M
Q
L
K
N
L----------
D
---------
E
-
K
C
M
C
P
A
----------
I
M
M
M
L
N
EPMWI----
R
---------------
M
R
------------
D
Q
V
---
M
-------------
S
-----------
M
--
A
H
N
L
P
I
E
C
-
N
L
M
S
Q
-------
P
C
Q
M------------------------------------------------------------
18
HHSearch
71.20
23%
-106
- C3 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
----------------------------------------------------------------------------------------------------------
I
-----
S
C
G
--
Q
V
A
S
A
I
A
P
C
---------
I
S
Y
-----
A
--
R
G
-------------
Q
G
---------
S
G-------
P
S
-------------
A
G
C
C
S
G
V
R
S
L
N
N
A
A
RT
T
A
D
R
R
---------
A
-
A
C
N
C
------------
L
K
N
------------
A
---------------
A
-------------
A
G
V
SG-
L
-------------
N
A
G
---------
N
--
A
A
S
I
P
S
K
C
-
G
V
S
I
P
-----------------------------------------------------------------------
24
SP3
69.68
19%
-57
* C3 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------------------------------------------------
A
I
-----
S
C
G
Q
V
A
S
--
A
I
A
P
C
---------
I
S
Y
-----
A
--
R
G
-------------
Q
G
---------
S
G-------
P
S
-------------
A
G
C
C
S
G
V
R
S
-----------
L
---------
N
-
N
A
--------------
A
R
T
------------
T
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
G
V
------------
S
G
L
N--
A
-------------
G
-----------
N
--
A
A
S
I
P
S
K
C
-
G
V
S
I
P
YTISTST
D
C
S
RVN----------------------------------------------------------
17
HHSearch
68.77
22%
-90
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
---------------------------------------------------------------------------------------------------------------------
Q
G
--
N
L
A
Q
C
---------
I
G
F
-----
L
--
Q
K
-------------
G
G
---------
V
--------
V
P
-------------
P
S
C
C
T
G
V
K
N
I
L
NSSRTTADR
R
---------
A
-
V
C
S
C
L
K
----------
A
A
A
------------
G
---------------
A
V
------------
R
-
G
---
I
-------------
N
P
N
---------
N
--
A
E
A
L
P
G
K
C
-
G
V
N
I
P
-----------------------------------------------------------------------
20
HHSearch
67.95
22%
-103
- C3 -
1HYP
-
HPSE_SOYBN
A:
[6-73]
----------------------------------------------------------------------------------------------------------
P
-----
S
C
P
------
D
L
S
I
C
---------
L
N
I
-----
L
GG
S
L
-------------
G
T
-------------------
V
-------------
D
D
C
C
A
L
I
G
G
LG
D
I
E
------
A
---------
I
-
V
C
L
C
I
Q
----------
L
R
A
-----------------------------
L
------------
G
I
----
L
-------------
N
L
N
R
--------
N
--
L
Q
L
I
L
N
S
C
-
G
R
S
Y
P
-------
S
---------------------------------------------------------------
6
Fugue
64.57
15%
-105
- C3 -
1IGN
-
RAP1_YEAST
A:
[94-242]
-----------------------------------------------------------------------------------------
K
R
K
F
S
A
D
E
D
Y
T
L
A
I
A
V
K
K
-----
Q
F
Y
--
R
D
--
L
F
Q
I
D
---------
P
D
T
-----
G
--
R
S
LIRTQSR------
R
G
---------
P
--------
I
A
-------------
R
E
F
F
K
H
F
A
E
-----------
E
H
AAHT
E
N
A
W
R
-
D
R
F
R
K
F
----------
L
L
A
------------
Y
---------------
G
I
------------
D
D
Y
---
I
-------------
S
-----------
Y
--
Y
E
A
E
E
P
M
K
-
N
L
T
P
T
-------
P
G
N
YNS----------------------------------------------------------
32
SP3
54.72
15%
-65
- C3 -
1U78
-
TC3A_CAEEL
A:
[2-104]
-------------------------------------------------------------------------------------------------------
P
R
G
S
-----
A
L
S
--
D
T
--
E
R
A
Q
----------
L
D
V
-----
M
--
K
L
-------------
L
N
---------
V
--------
S
L
-------------
H
E
M
S
R
K
I
S
R
-----------
S
---------
R
-
H
C
I
R
V
Y
----------
L
K
D
------------
P
V--------------
S
Y
------------
G
T
S
---
K
-------------
R
APRRKALS
V
R
-
D
--
E
R
N
V
I
R
A
A
-
S
N
S
C
K
-------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G--------------------------------------
29
SP3
52.77
14%
-83
- C3 -
1CTQ
1
RASH_HUMAN
A:
[1-166]
-------------------------------------------------------MTEYK
L
V
V
V
G
A
G
GVG
K
S
A
L
T
I
Q
L
I
QNHFVD
E
Y
D
P
T
I
E
D
S
Y
R
K
Q
V
V
I
D
G
E
T
C
L
L
D
I
L
D
T
A
G
--
Q
E
--
E
Y
S
A
M
---------
R
D
Q
-----
Y
--
M
R
-------------
T
G
---------
E
GFLC
V
F
A
I
N
N
-------------
T
K
S
F
E
D
I
H
Q
-----------
Y
---------
R
-
E
Q
I
K
R
V
----------
K
D
S
------------
D
---------------
D
V
P
M
V
L
V
GNKCDLA
A
R
T
---
V
-------------
E
S
R
---------
Q
--
A
Q
D
L
A
R
S
Y
-
G
I
P
Y
I
-------
E
T
S
AKTRQG
V
E
D
A
F
Y
T
L
V
R
E
I
R
Q
H----------------------------------------
30
SP3
44.05
12%
-55
- C3 -
1IHU
4
ARSA1_ECOLX
A:
[308-586]
Q
R
P
D
I
P
S
L
S
A
L
V
D
D
I
A
R
NE
H
G
L
I
M
L
M
G
K
G
GVG
K
T
T
M
A
A
A
I
A
V
R
L
A
D
M
G
F
D
V
H
L
T
T
SDPANN
L
Q
V
S
R
I
D
P
H
E
E
T
E
R
Y
R
Q
H
V
L
E
T
K
GKELD
E
A
G
K
R
L
L
E
E
D
L
R
S
P
C
T
E
E
-----
I
A
V
--
F
Q
--
A
F
S
R
V
---------
I
R
E
AGK
R
F
V
--
V
M
-------------
D
T
---------
A
--------
P
T
-------------
G
H
T
L
L
L
L
D
A
-----------
T
---------
T
-
P
--
M
M
L
----------
L
Q
D
------------
P
---------------
E
R
------------
T
K
V
---
L
L
V
T
L
PE
T
T
P
V
L
E
A
A
-----------
N
--
L
Q
A
D
L
E
R
A
-
G
I
H
P
W
-------
G
W
I
INNSLSIADTRS
P
L
L
R
M
R
A
Q
Q
E
L
P
Q
I
E
S
V
K
R
QHAS
R
V
A
L
V
P
VLASEPTG
I
D
K
L
K
Q
L
A
GHHH
28
SP3
43.09
9%
-90
- C2 -
1IV1
-
ISPF_THET8
A:
[2-151]
----------------------------------------------------------------------------------R
I
G
Y
G
E
D
S
H
R
L
E
E
G
R
P
L
Y
L
C
G
-
L
L
I
-----
P
S
P
--
V
G
--
A
L
A
H
S
DGD
A
A
L
H
A
L
T
D
A
-----
L
--
L
S
-------------
A
Y
GLGDIGLLF
P
--------
D
T
DPRWRGER
S
E
V
F
L
R
E
A
L
R
L
V
E
A
-----------
R
---------------
G
A
K
L
L
Q
A
S
L
V
L
T
L
D
R
------------
P
---------------
K
L
------------
G
P
H
---
R
-------------
K
-----------
A
--
L
V
D
S
L
S
R
L
L
R
L
P
Q
D
-------
R
I
G
L
T
F
K
T
SEGLAPS
H
V
Q
A
R
A
V
V
L
L
D--------------------------------------
26
SP3
37.86
14%
-35
- C3 -
1QGV
-
TXN4A_HUMAN
A:
[2-137]
--------------------------------------------------------------------------------------------SYM
L
P
H
L
H
N
G
W
Q
V
D
--------
Q
--
A
I
--
L
S
E
E
D
---------
R
V
V
-----
V
--
I
R
-------------
F
G
---------
H
--------
D
W
-------------
D
P
T
C
M
K
M
D
E
-----------
V
---------
L
-
Y
S
I
A
E
K
----------
V
K
N
F
A
V
I
Y
L
V
D
ITEV
P
---------------
D
F
------------
N
K
M
---
Y
-------------
E
LYDP
C
T
V
M
F
F
F
R
--
N
K
H
I
M
I
D
L
-
G
I
N
W
A
-------
M
E
D
K
Q
E
M
V
D
I
I
E
T
V
Y
R
G
A
R
K
GRG
L
V
V
S
PKDYS--------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
KTLILGEEVKATCDFTK
F
Q
VCKP
E
I
ITGSP
P
S
E
E
C
C
E
K
L
K
E
Q
Q
S
C
L
C
A
Y
LISP
S
I
S
Q
Y
I
G
N
A
K
R
V
I
R
A
CGIPFPNCS
38
100.00
100%
-127
- C- -
M038
-
A:
[1-224]
K
T
L
I
L
G
E
E
V
K
A
T
C
D
F
T
K
F
Q
V
C
K
P
E
I
I
T
G
S
P
P
S
E
E
C
C
E
K
L
K
E
Q
Q
S
C
L
C
A
Y
L
I
S
P
S
I
S
Q
Y
I
G
N
A
K
R
V
I
R
A
C
G
I
P
F
P
N
C
S
39
96.91
100%
-126
- C- -
M039
-
A:
[1-174]
K
T
L
I
L
G
E
E
V
K
A
T
C
D
F
T
K
F
Q
V
C
K
P
E
I
I
T
G
S
P
P
S
E
E
C
C
E
K
L
K
E
Q
Q
S
C
L
C
A
Y
L
I
S
P
S
I
S
Q
Y
I
G
N
A
K
R
V
I
R
A
C
G
I
P
F
P
N
C
S
40
93.25
100%
-113
- C- -
M040
-
A:
[1-174]
K
T
L
I
L
G
E
E
V
K
A
T
C
D
F
T
K
F
Q
V
C
K
P
E
I
I
T
G
S
P
P
S
E
E
C
C
E
K
L
K
E
Q
Q
S
C
L
C
A
Y
L
I
S
P
S
I
S
Q
Y
I
G
N
A
K
R
V
I
R
A
C
G
I
P
F
P
N
C
S