@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 130_tII_ARATH: (2014-05-02 )
VTCSPMQLASCAAAMTSSSPPSEACCTKLREQQPCLCGYMRNPTLRQYVSSPNARKVSNSCKIPSPSC
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------...--.--..--...10....--....--20-.-----........30-----------.-----.-......40.------.-.------------..-----..--------.50...---.....60.....-------..---------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------VTC--
S
--
P
M
--
Q
L
A
S
C
A
A
A
M--TSSS--P--P-----
S
E
A
C
C
T
K
L
RE-----------Q-----Q-P
C
L
CGYMRN------
P
-
T
------------
L
R
-----
Q
Y
--------VSSPNA---RKVSNSCKIPSP-------SC---------------------------------------------------------------------------------------------------------------------
1
HHSearch
92.53
46%
-99
- C3 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
--
Q
--
A
S
--
Q
L
A
V
C
A
S
A
I
--
L
S
G
A
--
K
--
P
-----
S
G
E
C
C
G
N
L
R
A
-----------
Q
-----
Q
-
G
C
F
C
Q
Y
A
K
D
------
P
-
T
------------
Y
G
-----
Q
Y
--------
I
R
S
P
H
A
---
R
D
T
L
T
S
C
G
L
A
V
P
-------
H
C
---------------------------------------------------------------------------------------------------------------------
2
HHSearch
89.01
43%
-93
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
--
N
--
A
G
--
Q
L
T
V
C
T
G
A
I
--
A
G
G
A
--
R
--
P
-----
T
A
A
C
C
S
S
L
R
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
D
------
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
P
N
A
---
R
K
A
V
S
S
C
G
I
A
L
P
-------
T
C
---------------------------------------------------------------------------------------------------------------------
26
SP3
88.21
42%
-93
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
--
N
--
A
G
--
Q
L
T
V
C
T
G
A
I
--
A
G
G
A
--
R
--
P
-----
T
A
A
C
C
S
S
L
R
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
D
------
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
P
N
A
---
R
K
A
V
S
S
C
G
I
A
L
P
-------
T
C
H--------------------------------------------------------------------------------------------------------------------
16
Fugue
88.21
42%
-93
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
--
N
--
A
G
--
Q
L
T
V
C
T
G
A
I
--
A
G
G
A
--
R
--
P
-----
T
A
A
C
C
S
S
L
R
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
D
------
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
P
N
A
---
R
K
A
V
S
S
C
G
I
A
L
P
-------
T
C
H--------------------------------------------------------------------------------------------------------------------
17
Fugue
81.74
33%
-97
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------------------------------------------------------------------------------------------------------AI
D
L
C
GM
S
--
Q
D
--
E
L
N
E
C
K
P
A
V
--
S
K
E
N
--
P
TS
P
-----
S
Q
P
C
C
T
A
L
Q
H
A----------
D
-----
F
-
A
C
L
C
G
Y
K
N
S
------
P
-
W
------------
L
G
-----
S
F
G-------
V
D
P
E
L
A
---
S
A
L
P
K
Q
C
G
L
A
N
A
P------
T
C
---------------------------------------------------------------------------------------------------------------------
3
HHSearch
81.22
31%
-105
- C3 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
D
--
E
L
N
E
C
K
P
A
V
--
S
K
E
N
PT
S
--
P
-----
S
Q
P
C
C
T
A
L
Q
H
-----------
A
-----
D
F
A
C
L
C
G
Y
K
N
S
------
P
-
W
------------
L
G
-----
S
F
G-------
V
D
P
E
L
A
---
S
A
L
P
K
Q
C
G
L
A
N
A
P------
T
C
---------------------------------------------------------------------------------------------------------------------
9
HHSearch
69.64
25%
-93
- C3 -
1T12
-
NLTP1_TOBAC
A:
[3-78]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
--
G
--
Q
V
T
S
N
L
A
P
C
L
A
Y
L
--
R
N
T
G
-----
P
-----
L
G
R
C
C
G
G
V
K
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
C
T
C
--
L
K
S
------
A
-
A
-------------
G
-----
A
I
SG------
I
N
L
G
K
A
---
A
G
L
P
S
T
C
G
V
N
I
P
------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
68.97
27%
-89
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
--
G
--
Q
V
S
S
S
L
A
P
C
I
P
Y
V
--
R
G
G
G
--
A
--
V
-----
P
P
A
C
C
N
G
I
R
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
C
N
C
--
L
K
Q
------
L
-
S
-------------
A
-----
S
V
PG------
V
N
P
N
N
A
---
A
A
L
P
G
K
C
G
V
S
I
P
------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
65.34
21%
-51
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
G
--
N
L
A
Q
C
I
G
F
L
--
Q
K
G
G
--
V
--
V
-----
P
P
S
C
C
T
G
V
K
N
I
L
NSSRTTADR
R
-----
A
-
V
C
S
C
L
K
A
A
A
------
G
-
A
------------
V
R
------
G
--------
I
N
P
N
N
A
---
E
A
L
P
G
K
C
G
V
N
I
P
------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
64.44
25%
-95
- C3 -
1HYP
-
HPSE_SOYBN
A:
[10-73]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
S
I
C
L
N
I
L
GG
S
L
G
T
-----------
V
D
D
C
C
A
L
I
G
G
-----------
L
G
D
I
E
A
I
-
V
C
L
C
I
Q
L
R
A
---------------------
L
G
-----
I
---------
L
N
L
N
R
N
L
--
Q
L
I
L
N
S
C
G
R
S
Y
P
-------
S
----------------------------------------------------------------------------------------------------------------------
8
HHSearch
62.67
24%
-82
- C3 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
C
--
G
--
Q
V
A
S
A
I
A
P
C
I
S
Y
A
--
R
G
Q
G
--
S
G-
P
-----
S
A
G
C
C
S
G
V
R
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
C
N
C
--
L
K
N
------
A
-
A
-------------
A
-----
G
V
SG------
L
N
A
G
N
A
---
A
S
I
P
S
K
C
G
V
S
I
P
------------------------------------------------------------------------------------------------------------------------------
27
SP3
61.85
20%
-65
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
S
C
--
G
Q
V
A
S
--
A
I
A
P
C
I
S
Y
A
--
R
G
Q
G
--
S
G-
P
-----
S
A
G
C
C
S
G
V
R
S
-----------
L
-----
N
-
N
A
----
A
R
T
------
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
-----
G
V
SG------
L
N
A
G
N
A
---
A
S
I
P
S
K
C
G
V
S
I
P
YTISTST
D
C
SRVN-----------------------------------------------------------------------------------------------------------------
4
HHSearch
59.30
21%
-56
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
--
L
V
R
P
C
L
S
Y
V
--
Q
G
G
P
--
G
--
P
-----
S
G
Q
C
C
D
G
V
K
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
C
N
C
L
K
G
I
A
------
R
-
G
------------
I
H
------
N
--------
L
N
E
D
N
A
---
R
S
I
P
P
K
C
G
V
N
L
P
------------------------------------------------------------------------------------------------------------------------------
22
Fugue
54.41
11%
-89
- C3 -
3ZR8
1
?
X:
[1-65]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
G
P
T
--
E
--
K
A
--
A
V
K
K
M
A
K
A
I
--
M
A
D
P
--
S
--
K
-----
A
D
D
V
Y
Q
K
W
A
D
-----------
K
-----
G
-------
Y
T
L
------
T
-
Q
------------
L
S
-----
D
F
--------
L
K
S
K
T
R
GKY
D
R
V
Y
N
G
Y
M
T
Y
R
D
-------
Y
V
---------------------------------------------------------------------------------------------------------------------
29
SP3
45.63
14%
-71
- C3 -
1U78
-
TC3A_CAEEL
A:
[2-104]
-------------------------------------------------------------------------------------------------------------------------------------------------------------PRG
S
A
L
--
S
--
D
T
--
E
R
A
Q
-
L
D
V
M
--
K
L
L
N
--
V
--
S
-----
L
H
E
M
S
R
K
I
S
R
-----------
S
-----
R
-
H
C
I
R
V
Y
L
K
D
------
P
V
S
------------
Y
G
-----
T
S
KRAPRRKA
L
S
V
R
D
E
---
R
N
V
I
R
A
A
S
N
S
C
K
-------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G---------------------------------------------------------------------------------------------
20
Fugue
45.17
18%
-46
- C3 -
1K25
-
?
A:
[264-631]
TLS
S
P
L
Q
S
F
M
E
T
Q
M
D
A
F
L
E
K
V
KGK
Y
M
T
A
T
L
V
SAKTGEIL
A
T
T
Q
R
PTFNADTKEGITEDFVWRDILYQ
S
N
Y
E
PG
S
A
M
K
V
M
T
L
A
S
S
I
D
N
N
T
F
P
S
GEYFNSSELSSN
V
G
M
S
L
L
E
Q
K
M
GD
A
T
W
L
D
Y
L
K
R
F
KFGVPTRFGLTD
E
Y
A
G
Q
L
P
ADN
I
V
S
I
A
Q
S
S
F
GQG
I
S
V
--
T
--
Q
T
--
Q
M
L
R
A
F
T
A
I
--
A
N
D
---------------------------------------------
G
V
M
L
E
------
P
-
K
------------
F
I
-----
S
A
--------
I
Y
D
T
N
N
---
Q
S
V
R
K
S
Q
K
E
I
V
G
-------
N
P
VS
K
E
A
A
S
T
T
R
N
H
M
I
L
V
GTDPLIITVPG
Q
N
V
A
V
K
S
G
T
A
Q
I
A
DEKNGGYLVGSTN
Y
I
F
S
A
V
T
M
N
PAENPD
F
I
L
Y
V
T
V
Q
QPEHYS
G
I
Q
L
G
E
F
A
T
P
I
L
E
R
A
S
A
M
KESLNLQSPAKNLDKVT
24
Fugue
45.02
12%
-43
- C3 -
2DA7
-
A:
[1-71]
-------------------------------------------------------------------------------------------------------------------------------------------------------GSSGSS
G
S
P
I
N
P
--
Y
--
K
D
--
H
M
S
V
L
K
A
Y
Y
--
A
M
N
M
--
E
--
P
-----
N
S
D
E
L
L
K
I
S
I
-----------
A
-----
V
-
G
-----
L
P
Q
------
E
-
F
------------
V
K
-----
E
W
--------
F
E
Q
R
K
V
---
Y
Q
Y
S
N
S
R
S
G
P
S
S
-------
G
----------------------------------------------------------------------------------------------------------------------
21
Fugue
43.50
14%
-66
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
E
A
EML
N
H
C
G
M
Y
L
M
--
K
--
N
L
--
G
E
R
S
Q
V
S
P
R
--
M
R
E
E
--
D
--
H
-----
K
Q
L
C
C
M
Q
L
K
N
L----------
D
-----
E
-
K
C
M
C
P
A
I
M
M
M
L
N
EPM
W
-
I
------------
R
M
-----
R
D
--------
Q
V
M
S
M
A
---
H
N
L
P
I
E
C
N
L
M
S
Q
-------
P
C
QM-------------------------------------------------------------------------------------------------------------------
32
SP3
42.37
13%
-44
- C3 -
1KNG
-
CYCY_BRADU
A:
[50-193]
---------------------------------------------------------------------------------------------------------------------------------------------------RPAPQ
T
A
L
P
P
LEG
L
Q
A
--
D
--
N
V
--
Q
V
P
G
L
D
P
A
A
--
F
K
G
---
K
--
V
S
L
V
N
V
W
A
S
W
C
V
P
C
H
D
-----------
E
-----
A
-
P
L
L
T
E
L
G
K
D
------
K
-
R
------------
F
Q
L
V
G
I
N
Y
K
--------
D
A
A
D
N
A
---
R
R
F
L
G
R
Y
G
N
P
F
G
-------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L---------------------------------------------------------------
23
Fugue
41.78
8%
-30
- C3 -
2LSE
-
?
A:
[1-101]
---------------------------------------------------------------------------------------------------------------------------------------MQEE
R
K
K
L
L
E
K
L
E
K
I
L
D
E
V
T
D
G
APD
E
A
R
--
E
--
R
I
--
E
K
L
A
K
D
V
K
D
--
E
L
E
E
--
G
--
D
-----
A
K
N
M
I
E
K
F
R
D
-----------
E
-----
M
-
E
Q
M
Y
K
D
A
P
N
------
A
-
V
------------
M
E
-----
Q
L
--------
L
E
E
I
E
K
---
L
L
K
K
A
G
S
L
V
P
R
G
-------
S
Y
LEHHHHHH-------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60.......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
VTC
S
P
M
Q
L
A
S
C
A
A
A
MTSSSPP
S
E
A
C
C
T
K
L
REQQP
C
L
CGYMRN
P
T
L
R
Q
Y
VSSPNARKVSNSCKIPSPSC
38
95.97
100%
-110
- C- -
M038
-
A:
[1-88]
V
T
C
S
P
M
Q
L
A
S
C
A
A
A
M
T
S
S
S
P
P
S
E
A
C
C
T
K
L
R
E
Q
Q
P
C
L
C
G
Y
M
R
N
P
T
L
R
Q
Y
V
S
S
P
N
A
R
K
V
S
N
S
C
K
I
P
S
P
S
C
42
95.84
100%
-115
- C- -
M042
-
A:
[1-87]
V
T
C
S
P
M
Q
L
A
S
C
A
A
A
M
T
S
S
S
P
P
S
E
A
C
C
T
K
L
R
E
Q
Q
P
C
L
C
G
Y
M
R
N
P
T
L
R
Q
Y
V
S
S
P
N
A
R
K
V
S
N
S
C
K
I
P
S
P
S
C
43
93.12
100%
-112
- C- -
M043
-
A:
[1-87]
V
T
C
S
P
M
Q
L
A
S
C
A
A
A
M
T
S
S
S
P
P
S
E
A
C
C
T
K
L
R
E
Q
Q
P
C
L
C
G
Y
M
R
N
P
T
L
R
Q
Y
V
S
S
P
N
A
R
K
V
S
N
S
C
K
I
P
S
P
S
C
41
87.84
100%
-110
- C- -
M041
-
A:
[1-83]
V
T
C
S
P
M
Q
L
A
S
C
A
A
A
M
T
S
S
S
P
P
S
E
A
C
C
T
K
L
R
E
Q
Q
P
C
L
C
G
Y
M
R
N
P
T
L
R
Q
Y
V
S
S
P
N
A
R
K
V
S
N
S
C
K
I
P
S
P
S
C