@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 131_tII_ARATH: (2014-05-02 )
EDTGDTGNVGVTCDARQLQPCLAAITGGGQPSGACCAKLTEQQSCLCGFAKNPAFAQYISSPNARKVLLACNVAYPTC
Atome Classification :
(20 SA)
---------------------------------------------------------.........10..-----.--..--...20....--.-------------.---..--30.-----.-----------.......40-----------.-----.-....----------..50----.------.---.------------..-----..--.---------60--...-.....70.....-------..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------EDTGDTGN
V
G
V
T
C-----
D
--
A
R
--
Q
L
Q
P
C
L
A
A
I--T-------------G---GG--Q-P-----S-----------
G
A
C
C
A
K
L
T
E
-----------
Q
-----
Q
-
S
C
L
C----------GFAK----N------
P
---
A
------------
F
A
-----
Q
Y
--I---------SS--PNA-
R
K
V
L
L
A
CNVAYP-------TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
86.98
50%
-139
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
T
V
C
T
G
A
I
--
A
-------------
G
---
G
A
--
R
-
P
-----
T
-----------
A
A
C
C
S
S
L
R
A
-----------
Q
-----
Q
-
G
C
F
C
----------
Q
F
A
K
----
D
------
P
---
R
------------
Y
G
-----
R
Y
--
V
---------
N
S
--
P
N
A
-
R
K
A
V
S
S
C
G
I
A
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
86.71
50%
-139
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
-------------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
T
V
C
T
G
A
I
--
A
-------------
G
---
G
A
--
R
-
P
-----
T
-----------
A
A
C
C
S
S
L
R
A
-----------
Q
-----
Q
-
G
C
F
C
----------
Q
F
A
K
----
D
------
P
---
R
------------
Y
G
-----
R
Y
--
V
---------
N
S
--
P
N
A
-
R
K
A
V
S
S
C
G
I
A
L
P
-------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
86.34
49%
-124
- C3 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
--------------------------------------------------------------------
A
C
-----
Q
--
A
S
--
Q
L
A
V
C
A
S
A
I
--
L
-------------
S
---
G
A
--
K
-
P
-----
S
-----------
G
E
C
C
G
N
L
R
A
-----------
Q
-----
Q
-
G
C
F
C
----------
Q
Y
A
K
----
D
------
P
---
T
------------
Y
G
-----
Q
Y
--
I
---------
R
S
--
P
H
A
-
R
D
T
L
T
S
C
G
L
A
V
P
-------
H
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
SP3
83.81
43%
-139
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
T
V
C
T
G
A
I
--
A
-------------
G
---
G
A
--
R
-
P
-----
T
-----------
A
A
C
C
S
S
L
R
A
-----------
Q
-----
Q
-
G
C
F
C
----------
Q
F
A
K
----
D
------
P
---
R
------------
Y
G
-----
R
Y
--
V
---------
N
S
--
P
N
A
-
R
K
A
V
S
S
C
G
I
A
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
75.03
27%
-117
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------
A
I
D
L
C
GM---
S
--
Q
D
--
E
L
N
E
C
K
P
A
V
--
S
-------------
K
---
E
N
PT
S
-
P
-----
S
-----------
Q
P
C
C
T
A
L
Q
H
A----------
D
-----
F
-
A
C
L
C
----------
G
Y
K
N
----
S
------
P
---
W
------------
L
G
-----
S
F
G-
V
---------
D
P
--
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
71.08
20%
-130
* C3 *
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------------------------------------------------------
P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
--
A
E
--
M
L
N
H
C
G
M
Y
L
--
M
KN-----------
L
---
G
E
--
R
-
S
-----
Q
VSPR
M
R
E
E
D
H
K
Q
L
C
C
M
Q
L
K
N
L----------
D
-----
E
-
K
C
M
C
----------
P
A
I
M
M
M
L
N
E
------
P
---
M
------------
W
I
-----
R
M
--
R
---------
D
Q
V
M
S
M
A
-
H
N
L
P
I
E
C
N
L
M
S
Q
-------
P
C
QM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
70.35
35%
-107
- C3 -
1T12
-
NLTP1_TOBAC
A:
[2-78]
-------------------------------------------------------------------
I
T
C
-----
G
--
Q
V
T
S
N
L
A
P
C
L
A
Y
L
--
R
-------------
N
---
T
G
----
P
-----
L
-----------
G
R
C
C
G
G
V
K
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
C
T
C
------------
L
K
----
S
------
A
---
A
-------------
G
-----
A
I
SG
I
---------
N
L
--
G
K
A
-
A
G
L
P
S
T
C
G
V
N
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
SP3
67.41
24%
-97
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------
A
I
S
C
-----
G
Q
V
A
S
--
A
I
A
P
C
I
S
Y
A
--
R
-------------
G
---
Q
G
--
S
G
P
-----
S
-----------
A
G
C
C
S
G
V
R
S
-----------
L
-----
N
-
N
A
--------------
A
R
----
T
------
T
---
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
-----
G
V
SG
L
---------
N
A
--
G
N
A
-
A
S
I
P
S
K
C
G
V
S
I
P
YTISTST
D
C
SRVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
67.39
28%
-118
- C3 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
------------------------------------------------------------------------------
Q
D
--
E
L
N
E
C
K
P
A
V
--
S
-------------
K
---
E
N
PT
S
-
P
-----
S
-----------
Q
P
C
C
T
A
L
Q
H
-----------
A
-----
D
F
A
C
L
C
----------
G
Y
K
N
----
S
------
P
---
W
------------
L
G
-----
S
F
G-
V
---------
D
P
--
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
65.56
32%
-92
- C3 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
-------------------------------------------------------------------
I
S
C
-----
G
--
Q
V
A
S
A
I
A
P
C
I
S
Y
A
--
R
-------------
G
---
Q
G
--
S
G
P
-----
S
-----------
A
G
C
C
S
G
V
R
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
C
N
C
------------
L
K
----
N
------
A
---
A
-------------
A
-----
G
V
SG
L
---------
N
A
--
G
N
A
-
A
S
I
P
S
K
C
G
V
S
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
64.52
33%
-97
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
-------------------------------------------------------------------
I
T
C
-----
G
--
Q
V
S
S
S
L
A
P
C
I
P
Y
V
--
R
-------------
G
---
G
G
--
A
-
V
-----
P
-----------
P
A
C
C
N
G
I
R
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
C
N
C
------------
L
K
----
Q
------
L
---
S
-------------
A
-----
S
V
PG
V
---------
N
P
--
N
N
A
-
A
A
L
P
G
K
C
G
V
S
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
Fugue
64.15
16%
-83
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
-----
E
--
A
E
--
M
L
N
H
C
G
M
Y
L
--
M
KNLGERSQVSPR
M
R
---
E
E
--
D
-
H
-----
K
-----------
Q
L
C
C
M
Q
L
K
N
L----------
D
-----
E
-
K
C
M
C
----------
P
A
I
M
----
M
M
L
N
EPM
W
---
I
------------
R
M
-----
R
D
--
Q
---------
V
M
--
S
M
A
-
H
N
L
P
I
E
C
N
L
M
S
Q
-------
P
C
QM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
63.27
25%
-116
- C3 -
1HYP
-
HPSE_SOYBN
A:
[6-73]
-------------------------------------------------------------------
P
S
C
-----
P
------
D
L
S
I
C
L
N
I
L
GG
S
-------------
L
---
G
T
----------
V
-----------
D
D
C
C
A
L
I
G
G
-----------
L
G
D
I
E
A
I
-
V
C
L
C
----------
I
Q
L
R
----
A
-----------------------
L
G
-----
I
---
L
---------
N
L
--
N
R
N
L
Q
L
I
L
N
S
C
G
R
S
Y
P
-------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
61.22
31%
-69
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
------------------------------------------------------------------------------
D
S
--
L
V
R
P
C
L
S
Y
V
--
Q
-------------
G
---
G
P
--
G
-
P
-----
S
-----------
G
Q
C
C
D
G
V
K
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
C
N
C
----------
L
K
G
I
----
A
------
R
---
G
------------
I
H
------
N
--
L
---------
N
E
--
D
N
A
-
R
S
I
P
P
K
C
G
V
N
L
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
56.01
16%
-83
- C3 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
Y
S
P
N
S
P
A
Q
P
Q
T
A
G
-----
T
--
L
T
--
L
L
P
V
A
L
R
A
P
--
V
-------------
T
---
A
G
--
Q
-
L
-----
A
-----------
V
E
N
G
H
Y
V
V
E
-----------
T
-----
L
-
A
R
A
C
----------
D
G
C
L
----
N
------
G
---
E
------------
F
A
-----
A
L
--
I
---------
T
G
--
P
V
H
-
K
G
V
I
N
D
A
G
I
P
F
T
-------
G
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
5
Fugue
55.30
14%
-44
- C3 -
1P68
-
?
A:
[1-102]
--------------------------------------MYGK
L
N
D
L
L
E
D
L
Q
E
V
L
K
N
L
H
K
N
W
H
G
G
K
D
N
L
H
D
-----
V
--
D
N
--
H
L
Q
N
V
I
E
D
I
--
H
-------------
D
F
M
Q
G
G
--
G
-
S
-----
G
-----------
G
K
L
Q
E
M
M
K
E
-----------
F
-----
Q
-
Q
V
L
D
----------
E
L
N
N
----
H
------
L
QGG
K
------------
H
T
-----
V
H
--
H
---------
I
E
--
Q
N
I
-
K
E
I
F
H
H
L
E
E
L
V
H
-------
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
54.89
12%
-86
- C3 -
2J9W
-
?
A:
[120-220]
---------------------------------------------------------
H
H
M
G
N
L
N
R
C
I
A
D
I
--------
V
S
--
L
F
I
T
V
M
D
K
L
--
R
-------------
L
---
E
I
--
R
-
A
-----
M
-----------
D
E
I
Q
P
D
L
R
E
-----------
L
-----
M
-
E
T
M
N
R
MSHLPPDF
E
G
R
E
K
----
V
------
S
---
Q
------------
W
L
-----
Q
K
--
L
S
S
MSAS
D
E
L
D
D
--
S
Q
V
-
R
Q
M
L
F
D
L
E
S
A
Y
N
-------
A
F
N
R
F
L
H--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
54.72
26%
-86
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
------------------------------------------------------------------------------
Q
G
--
N
L
A
Q
C
I
G
F
L
--
Q
-------------
K
---
G
G
--
V
-
V
-----
P
-----------
P
S
C
C
T
G
V
K
N
I
L
NSSRTTADR
R
-----
A
-
V
C
S
C
----------
L
K
A
A
----
A
------
G
---
A
------------
V
R
------
G
--
I
---------
N
P
--
N
N
A
-
E
A
L
P
G
K
C
G
V
N
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
SP3
53.65
17%
-68
- C3 -
1KNG
-
CYCY_BRADU
A:
[50-193]
------------------------------------------------------RPA
P
Q
T
A
L
P
P
L
E
G
L
Q
A
-----
D
--
N
V
--
Q
V
P
G
L
D
P
A
A
--
F
-------------
K
---
G
---
K
-
V
S
L
V
N
V
W
-----------
A
S
W
C
V
P
C
H
D
-----------
E
-----
A
-
P
L
L
T
----------
E
L
G
K
----
D
------
K
---
R
------------
F
Q
L
V
G
I
N
Y
K
--
D
---------
A
A
--
D
N
A
-
R
R
F
L
G
R
Y
G
N
P
F
G
-------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L-------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
48.27
15%
-64
- C3 -
1QAS
-
PLCD1_RAT
A:
[205-298]
----------------------------------------------YKMLTQR
A
E
I
D
R
A
F
E
E
A
A
G
S
A
E
T
L
-----
S
--
V
E
--
R
L
V
T
F
L
Q
H
Q
--
Q
-------------
R
---
E
E
--
E
-
A
-----
G
-----------
P
A
L
A
L
S
L
I
E
-----------
R
YEPS
E
T
-
A
K
A
Q
----------
R
Q
M
T
----
K
------
D
---
G
------------
F
L
-----
M
Y
--
L
---------
L
S
--
A
D
G
-
N
A
F
S
L
A
H
R
R
V
Y
Q
-------
D
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70.......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
EDTGDTGN
V
G
V
T
C
D
A
R
Q
L
Q
P
C
L
A
A
ITGGGQPS
G
A
C
C
A
K
L
T
E
Q
Q
S
C
L
CGFAKN
P
A
F
A
Q
Y
ISSPNA
R
K
V
L
L
A
CNVAYPTC
40
98.43
100%
-155
- C- -
M040
-
A:
[1-146]
E
D
T
G
D
T
G
N
V
G
V
T
C
D
A
R
Q
L
Q
P
C
L
A
A
I
T
G
G
G
Q
P
S
G
A
C
C
A
K
L
T
E
Q
Q
S
C
L
C
G
F
A
K
N
P
A
F
A
Q
Y
I
S
S
P
N
A
R
K
V
L
L
A
C
N
V
A
Y
P
T
C
38
96.95
100%
-149
- C- -
M038
-
A:
[1-126]
E
D
T
G
D
T
G
N
V
G
V
T
C
D
A
R
Q
L
Q
P
C
L
A
A
I
T
G
G
G
Q
P
S
G
A
C
C
A
K
L
T
E
Q
Q
S
C
L
C
G
F
A
K
N
P
A
F
A
Q
Y
I
S
S
P
N
A
R
K
V
L
L
A
C
N
V
A
Y
P
T
C
39
95.83
100%
-125
- C- -
M039
-
A:
[1-146]
E
D
T
G
D
T
G
N
V
G
V
T
C
D
A
R
Q
L
Q
P
C
L
A
A
I
T
G
G
G
Q
P
S
G
A
C
C
A
K
L
T
E
Q
Q
S
C
L
C
G
F
A
K
N
P
A
F
A
Q
Y
I
S
S
P
N
A
R
K
V
L
L
A
C
N
V
A
Y
P
T
C