@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 132_tII_ARATH: (2014-05-02 )
VVVRVEEEEKVVCIVTDLRVCLPAVEAGSQPSVQCCGKLKEQLSCLCGYLKIPSFTQYVSSGKAQKVLTACAIPIPKC
Atome Classification :
(20 SA)
------------------------------------------------------.........10..--.--..--..---.20....--.-..---.--30.-----........40----------.-----------.-----.-......50----.-.-.------------....--------.60..----.-...----..70..---.-..---------..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------
V
V
V
R
VEEEE
K
V
V
C
--
I
--
V
T--
D
L
---
R
V
C
L
P
A
V--E-AG---S--Q-
P
-----
S
V
Q
C
C
G
K
L
K
-----------
E
-----------
Q
-----
L
-
S
C
L
C
G
Y
LK----I-P-
S
------------
F
T
Q
Y
--------
V
SSG
K
----
A
-
Q
K
V
----
L
T
A
CAI---P-IP---------KC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
88.45
40%
-114
- C3 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
-----------------------------------------------------------------
A
C
--
Q
--
A
S
--
Q
L
---
A
V
C
A
S
A
I
--
L
-
S
G
---
A
--
K
-
P
-----
S
G
E
C
C
G
N
L
R
-----------
A
-----------
Q
-----
Q
-
G
C
F
C
Q
Y
A
K
----
D
-
P
-
T
------------
Y
G
Q
Y
--------
I
R
S
P
H
----
A
-
R
D
T
----
L
T
S
C
G
L
---
A
-
V
P
---------
H
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
82.34
35%
-134
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
--
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
-
G
G
---
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
-----------
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
----
D
-
P
-
R
------------
Y
G
R
Y
--------
V
N
S
P
N
----
A
-
R
K
A
----
V
S
S
C
G
I
---
A
-
L
P
---------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
82.14
35%
-134
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
----------------------------------------------------------------
A
G
C
--
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
-
G
G
---
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
-----------
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
----
D
-
P
-
R
------------
Y
G
R
Y
--------
V
N
S
P
N
----
A
-
R
K
A
----
V
S
S
C
G
I
---
A
-
L
P
---------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
79.69
27%
-105
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
------------------------------------------------------------
A
I
D
L
C
G
M
--
S
--
Q
D
--
E
L
---
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E
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A
V
--
S
-
K
E
NP-
T
--
S
-
P
-----
S
Q
P
C
C
T
A
L
Q
-----------
H
A----------
D
-----
F
-
A
C
L
C
G
Y
K
N
----
S
-
P
-
W
------------
L
G
S
F
G-------
V
D
P
E
L
----
A
-
S
A
L
----
P
K
Q
C
G
L
---
A
-
N
A
P--------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
SP3
79.51
30%
-134
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
--
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
-
G
G
---
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
-----------
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
----
D
-
P
-
R
------------
Y
G
R
Y
--------
V
N
S
P
N
----
A
-
R
K
A
----
V
S
S
C
G
I
---
A
-
L
P
---------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
78.12
26%
-112
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
----------------------------------------------------------------
I
D
C
G
H
V
--
D
S
--
L
V
---
R
P
C
L
S
Y
V
--
Q
G
G
P
------
G
-
P
-----
S
G
Q
C
C
D
G
V
K
N
L
H
N
Q
ARS
Q
S
D
R
-----------
Q
-----
S
-
A
C
N
C
L
K
G
I
----
A
-
R
-
G
------------
I
H
N
L
--------
N
-
E
D
N
----
A
-
R
S
I
----
P
P
K
C
G
------
V
N
LP
Y
T
I
S
LNI
D
C
SRV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
73.63
32%
-108
- C3 -
1T12
-
NLTP1_TOBAC
A:
[2-78]
----------------------------------------------------------------
I
T
C
--
G
--
Q
V
T
S
N
L
---
A
P
C
L
A
Y
L
--
R
-
N
T
---
G
----
P
-----
L
G
R
C
C
G
G
V
K
-----------
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
C
T
C
--
L
K
----
S
-
A
-
A
-------------
G
A
I
SG------
I
N
L
G
K
----
A
-
A
G
L
----
P
S
T
C
G
V
---
N
-
I
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
72.95
31%
-103
- C3 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
------------------------------------------------------------------------
Q
D
--
E
L
---
N
E
C
K
P
A
V
--
S
-
K
E
---
N
PT
S
-
P
-----
S
Q
P
C
C
T
A
L
Q
-----------
H
-----------
A
-----
D
F
A
C
L
C
G
Y
K
N
----
S
-
P
-
W
------------
L
G
S
F
G-------
V
D
P
E
L
----
A
-
S
A
L
----
P
K
Q
C
G
L
---
A
-
N
A
P--------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
66.38
30%
-106
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
----------------------------------------------------------------
I
T
C
--
G
--
Q
V
S
S
S
L
---
A
P
C
I
P
Y
V
--
R
-
G
G
---
G
--
A
-
V
-----
P
P
A
C
C
N
G
I
R
-----------
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
C
N
C
--
L
K
----
Q
-
L
-
S
-------------
A
S
V
PG------
V
N
P
N
N
----
A
-
A
A
L
----
P
G
K
C
G
V
---
S
-
I
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
62.58
27%
-139
- C3 -
1HYP
-
HPSE_SOYBN
A:
[6-73]
----------------------------------------------------------------
P
S
C
--
P
------
D
L
---
S
I
C
L
N
I
L
GG
S
-
L
G
---
T
----------
V
D
D
C
C
A
L
I
G
-----------
G
-----------
L
G
D
I
E
A
I
-
V
C
L
C
I
Q
L
R
----
A
----------------
L
G
I
---------
L
N
L
N
R
----
N
L
Q
L
I
----
L
N
S
C
G
R
---
S
-
Y
P
---------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
61.94
16%
-85
- C3 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
Y
S
P
N
S
P
A
Q
P
Q
--
T
--
A
G
--
T
L
T
L
L
P
V
A
L
R
A
P
--
V
-
T
A
---
G
--
Q
-
L
-----
A
V
E
N
G
H
Y
V
V
-----------
E
-----------
T
-----
L
-
A
R
A
C
D
G
C
L
----
N
-
G
-
E
------------
F
A
A
L
--------
I
T
G
P
V
----
H
-
K
G
V
----
I
N
D
A
G
I
---
P
-
F
T
---------
G
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
8
HHSearch
61.55
24%
-98
- C3 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
----------------------------------------------------------------
I
S
C
--
G
--
Q
V
A
S
A
I
---
A
P
C
I
S
Y
A
--
R
-
G
Q
---
G
--
S
G
P
-----
S
A
G
C
C
S
G
V
R
-----------
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
C
N
C
--
L
K
----
N
-
A
-
A
-------------
A
G
V
SG------
L
N
A
G
N
----
A
-
A
S
I
----
P
S
K
C
G
V
---
S
-
I
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
60.61
28%
-65
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
------------------------------------------------------------------------
D
S
--
L
V
---
R
P
C
L
S
Y
V
--
Q
-
G
G
---
P
--
G
-
P
-----
S
G
Q
C
C
D
G
V
K
-----------
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
C
N
C
L
K
G
I
----
A
-
R
-
G
------------
I
H
-
N
--------
L
N
E
D
N
----
A
-
R
S
I
----
P
P
K
C
G
V
---
N
-
L
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
SP3
60.16
15%
-86
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------
A
I
S
C
--
G
Q
V
A
S
--
A
I
---
A
P
C
I
S
Y
A
--
R
-
G
Q
---
G
--
S
G
P
-----
S
A
G
C
C
S
G
V
R
-----------
S
-----------
L
-----
N
-
N
A
----
A
R
----
T
-
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
G
V
SG------
L
N
A
G
N
----
A
-
A
S
I
----
P
S
K
C
G
V
---
S
-
I
P
YTISTST--
D
C
SRVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
59.13
20%
-75
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
------------------------------------------------------------------------
Q
G
--
N
L
---
A
Q
C
I
G
F
L
--
Q
-
K
G
---
G
--
V
-
V
-----
P
P
S
C
C
T
G
V
K
-----------
N
I
L
NSSRTTADR
R
-----
A
-
V
C
S
C
L
K
A
A
----
A
-
G
-
A
------------
V
R
-
G
--------
I
N
P
N
N
----
A
-
E
A
L
----
P
G
K
C
G
V
---
N
-
I
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
57.92
23%
-74
- C3 -
1IMO
-
A:
[835-922]
-----------------------------------------------------------
G
S
A
D
E
T
L
C
--
Q
--
T
K
--
V
L
---
L
D
I
F
T
G
V
--
R
-
L
Y
---
L
--
P
-
P
-----
S
T
P
D
F
S
R
L
R
-----------
R
-----------
Y
-----
F
-
V
A
F
D
G
D
L
V
Q
EFD
M
-
T
-
S
------------
A
T
H
V
--------
L
G
S
R
D
KNPA
A
-
Q
Q
V
S
P
E
W
I
W
A
C
I
R
K
RR
L
-
V
A
---------
P
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
52.42
15%
-92
- C3 -
1U78
-
TC3A_CAEEL
A:
[2-104]
-------------------------------------------------------------
P
R
G
S
A
L
--
S
--
D
T
--
E
R
---
A
Q
-
L
D
V
M
--
K
-
L
L
---
N
--
V
-
S
-----
L
H
E
M
S
R
K
I
S
-----------
R
-----------
S
-----
R
-
H
C
I
R
V
Y
L
K
----
D
-
P
V
S
------------
Y
G
T
S
KRAPRRKA
L
S
V
R
D
----
E
-
R
N
V
----
I
R
A
A
S
N
---
S
-
C
K
---------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
50.17
15%
-85
- C3 -
1F9M
-
TRXF_SPIOL
A:
[10-121]
--------------------------------------------------------
M
E
A
I
V
G
K
V
T
E
V
--
N
--
K
D
--
T
F
------
W
P
I
V
--
K
A
A
G
---
D
--
K
-
P
V
V
L
D
M
F
T
Q
W
C
G
P
C
K
-----------
A
-----------
M
-----
A
-
P
K
Y
E
K
L
A
E
----
E
Y
L
-
D
V
I
----------
F
L
K
L
--------
D
C
N
Q
E
----
N
-
K
T
L
----
A
K
E
L
G
I
---
R
V
V
P
---------
T
F
K
I
L
K
ENSVV
G
E
V
T
G
AK
Y
D
K
L
L
E
A
I
Q
A
A
R
S--------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
48.48
10%
-81
- C3 -
3BBN
-
T:
[80-181]
------------------------------------AAAPTKKADSAAKRARQA
E
K
R
R
V
Y
N
K
S
K
K
S
E
--
A
--
R
T
--
R
M
---
K
K
V
L
E
A
L
--
E
-
G
L
KKK
T
--
D
-
A
-----
Q
A
D
E
I
V
T
V
E
-----------
K
-----------
L
-----
I
-
G
E
A
Y
S
A
I
D
----
K
-
A
-
V
------------
K
V
K
A
--------
L
H
K
N
T
----
G
-
A
R
R
----
K
S
R
L
A
R
---
R
-
K
K
---------
A
V
EIH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
44.54
10%
-83
- C4 -
3FBI
-
MED31_YEAST
B:
[19-110]
---------------------------------------------------QNP
L
P
T
R
F
E
V
E
L
E
F
I
Q
--
S
--
L
A
--
N
-------
I
Q
Y
V
--
T
-
Y
L
---
L
--
T
-
Q
-----
Q
Q
I
W
K
S
P
N
F
-----------
K
-----------
N
-----
Y
-
L
K
Y
L
E
Y
W
C
----
N
-
P
-
P
------------
Y
S
Q
C
--------
I
V
Y
P
N
----
C
-
L
F
I
----
L
K
L
L
N
G
---
F
M
E
S
---------
A
I
V
N
EDGLLEGLDELP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70.......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
V
V
V
R
VEEEE
K
V
V
C
I
V
T
D
L
R
V
C
L
P
A
VEAGSQ
P
S
V
Q
C
C
G
K
L
K
E
Q
L
S
C
L
C
G
Y
LKIP
S
F
T
Q
Y
V
SSG
K
A
Q
K
V
L
T
A
CAIPIPKC
41
93.52
100%
-147
- C- -
M041
-
A:
[1-112]
V
V
V
R
V
E
E
E
E
K
V
V
C
I
V
T
D
L
R
V
C
L
P
A
V
E
A
G
S
Q
P
S
V
Q
C
C
G
K
L
K
E
Q
L
S
C
L
C
G
Y
L
K
I
P
S
F
T
Q
Y
V
S
S
G
K
A
Q
K
V
L
T
A
C
A
I
P
I
P
K
C
35
33.69
100%
-6
- C- -
M035
-
A:
[7-83]
V
V
V
R
V
E
E
E
E
K
V
V
C
I
V
T
D
L
R
V
C
L
P
A
V
E
A
G
S
Q
P
S
V
Q
C
C
G
K
L
K
E
Q
L
S
C
L
C
G
Y
L
K
I
P
S
F
T
Q
Y
V
S
S
G
K
A
Q
K
V
L
T
A
C
A
I
P
I
P
K
C
34
28.57
100%
4
- C- -
M034
-
A:
[7-83]
V
V
V
R
V
E
E
E
E
K
V
V
C
I
V
T
D
L
R
V
C
L
P
A
V
E
A
G
S
Q
P
S
V
Q
C
C
G
K
L
K
E
Q
L
S
C
L
C
G
Y
L
K
I
P
S
F
T
Q
Y
V
S
S
G
K
A
Q
K
V
L
T
A
C
A
I
P
I
P
K
C