@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 135_tII_ARATH: (2014-05-02 )
TVVGGWGIEEKAACIVTNLMSCLPAILKGSQPPAYCCEMLKEQQSCLCGYIKSPTFGHYVIPQNAHKLLAACGILYPKC
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........----10....--..--..20.....--.-.-------------.--30-.-.-----.......40-----------.-----------.-----.-.....50--...------..------------.------------...--60----.-....-....70....-..---------..------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TVVGGWGI
E
----
E
K
A
A
C
I
--
V
T
--
N
L
M
S
C
L
P
A
I
--L-K-------------G--S--Q-
P
-----
P
A
Y
C
C
E
M
L
K
-----------
E
-----------
Q
-----
Q
-
S
C
L
C
G
Y---IKS------PT------------F------------GHY--V-----I-PQ
N
A
-
H
K
L
L
A
A
C
GIL-YP---------KC------------------------------------------------------
11
HHSearch
93.45
43%
-156
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
N
--
A
G
--
Q
L
T
V
C
T
G
A
I
--
A
-
G
-------------
G
--
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
-----------
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
---
A
K
D
------
P
R
------------
Y
------------
G
R
Y
--
V
-----
N
-
S
P
N
A
-
R
K
A
V
S
S
C
G
I
A
-
L
P
---------
T
C
------------------------------------------------------
1
Fugue
93.19
42%
-156
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
N
--
A
G
--
Q
L
T
V
C
T
G
A
I
--
A
-
G
-------------
G
--
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
-----------
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
---
A
K
D
------
P
R
------------
Y
------------
G
R
Y
--
V
-----
N
-
S
P
N
A
-
R
K
A
V
S
S
C
G
I
A
-
L
P
---------
T
C
H-----------------------------------------------------
10
HHSearch
92.60
42%
-161
- C3 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
Q
--
A
S
--
Q
L
A
V
C
A
S
A
I
--
L
-
S
-------------
G
--
A
--
K
-
P
-----
S
G
E
C
C
G
N
L
R
-----------
A
-----------
Q
-----
Q
-
G
C
F
C
Q
Y
---
A
K
D
------
P
T
------------
Y
------------
G
Q
Y
--
I
-----
R
-
S
P
H
A
-
R
D
T
L
T
S
C
G
L
A
-
V
P
---------
H
C
------------------------------------------------------
12
HHSearch
91.91
37%
-141
- C3 -
2RKN
2
DIRL1_ARATH
A:
[4-77]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
C
G
MS
Q
D
--
E
L
N
E
C
K
P
A
V
--
S
-
K
-------------
E
--
N
PT
S
-
P
-----
S
Q
P
C
C
T
A
L
Q
-----------
H
-----------
A
-----
D
F
A
C
L
C
G
Y
---
K
N
S
------
P
W
------------
L
------------
G
S
F
G-
V
-----
D
-
P
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
-
N
A
P--------
T
C
------------------------------------------------------
23
SP3
90.00
36%
-156
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
N
--
A
G
--
Q
L
T
V
C
T
G
A
I
--
A
-
G
-------------
G
--
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
-----------
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
---
A
K
D
------
P
R
------------
Y
------------
G
R
Y
--
V
-----
N
-
S
P
N
A
-
R
K
A
V
S
S
C
G
I
A
-
L
P
---------
T
C
H-----------------------------------------------------
2
Fugue
86.99
31%
-126
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
----
D
L
C
G
M
S
--
Q
D
--
E
L
N
E
C
K
P
A
V
--
S
-
K
-------------
E
NP
T
--
S
-
P
-----
S
Q
P
C
C
T
A
L
Q
-----------
H
A----------
D
-----
F
-
A
C
L
C
G
Y
---
K
N
S
------
P
W
------------
L
------------
G
S
F
--
G
-----
V
D
P
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
-
N
A
P--------
T
C
------------------------------------------------------
18
HHSearch
75.52
32%
-155
- C3 -
1T12
-
NLTP1_TOBAC
A:
[2-78]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
G
--
Q
V
T
S
N
L
A
P
C
L
A
Y
L
--
R
-
N
-------------
T
--
G
----
P
-----
L
G
R
C
C
G
G
V
K
-----------
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
C
T
C
-----
L
K
S
------
A
A
-------------------------
G
A
I
SG
I
-----
N
-
L
G
K
A
-
A
G
L
P
S
T
C
G
V
N
-
I
P
-----------------------------------------------------------------
16
HHSearch
73.85
30%
-112
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
G
--
N
L
A
Q
C
I
G
F
L
--
Q
-
K
-------------
G
--
G
--
V
-
V
-----
P
P
S
C
C
T
G
V
K
-----------
N
I
L
NSSRTTADR
R
-----
A
-
V
C
S
C
L
K
---
A
A
A
------
G
A
------------
V
------------
R
-
G
--
I
-----
N
-
P
N
N
A
-
E
A
L
P
G
K
C
G
V
N
-
I
P
-----------------------------------------------------------------
17
HHSearch
73.72
22%
-133
- C3 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
C
G
--
Q
V
A
S
A
I
A
P
C
I
S
Y
A
--
R
-
G
-------------
Q
--
G
--
S
G
P
-----
S
A
G
C
C
S
G
V
R
-----------
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
C
N
C
-----
L
K
N
------
A
A
-------------------------
A
G
V
SG
L
-----
N
-
A
G
N
A
-
A
S
I
P
S
K
C
G
V
S
-
I
P
-----------------------------------------------------------------
15
HHSearch
73.60
32%
-135
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
G
--
Q
V
S
S
S
L
A
P
C
I
P
Y
V
--
R
-
G
-------------
G
--
G
--
A
-
V
-----
P
P
A
C
C
N
G
I
R
-----------
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
C
N
C
-----
L
K
Q
------
L
S
-------------------------
A
S
V
PG
V
-----
N
-
P
N
N
A
-
A
A
L
P
G
K
C
G
V
S
-
I
P
-----------------------------------------------------------------
24
SP3
72.22
15%
-122
* C3 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
S
--
A
I
A
P
C
I
S
Y
A
--
R
-
G
-------------
Q
--
G
--
S
G
P
-----
S
A
G
C
C
S
G
V
R
-----------
S
-----------
L
-----
N
-
N
A
-------
A
R
T
------
T
A
D
R
R
A
A
C
N
C
L
K
N
A
A
------------
A
G
V
SG
L
-----
N
-
A
G
N
A
-
A
S
I
P
S
K
C
G
V
S
-
I
P
YTISTST--
D
C
SRVN--------------------------------------------------
5
Fugue
71.31
16%
-141
- C3 -
1P68
-
?
A:
[1-102]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MYGK
L
N
D
L
L
E
D
L
Q
E
V
L
K
N
L
H
K
N
W
H
G
G
KDNL
H
D
V
D
N
H
--
L
Q
--
N
V
I
E
D
I
H
D
F
--
M
-
Q
-------------
G
--
G
--
G
-
S
-----
G
G
K
L
Q
E
M
M
K
-----------
E
-----------
F
-----
Q
-
Q
V
L
D
E
L
N
N
H
L
Q
G
------
G
K
------------
H
------------
T
V
H
--
H
-----
I
-
E
Q
N
I
-
K
E
I
F
H
H
L
E
E
L
-
V
H
---------
R
-------------------------------------------------------
13
HHSearch
67.30
25%
-109
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
--
L
V
R
P
C
L
S
Y
V
--
Q
-
G
-------------
G
--
P
--
G
-
P
-----
S
G
Q
C
C
D
G
V
K
-----------
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
C
N
C
L
K
---
G
I
A
------
R
G
------------
I
------------
H
-
N
--
L
-----
N
-
E
D
N
A
-
R
S
I
P
P
K
C
G
V
N
-
L
P
-----------------------------------------------------------------
4
Fugue
67.05
22%
-105
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
--
D
S
--
L
V
R
P
C
L
S
Y
V
--
Q
-
G
-------------
G
--
P
---G
P
-----
S
G
Q
C
C
D
G
V
K
N
L
H
N
Q
ARS
Q
S
D
R
-----------
Q
-----
S
-
A
C
N
C
L
K
---
G
I
A
------
R
G
------------
I
------------
H
N
L
--
N
-------
E
D
N
A
-
R
S
I
P
P
K
C
G
---
V
N
LP
Y
T
I
S
LNI
D
C
SRV---------------------------------------------------
3
Fugue
65.67
18%
-128
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
----
Y
Q
Q
M
E
E
--
A
E
--
M
L
N
H
C
G
M
Y
L
--
M
-
K
NLGERSQVSPR
M
R
E
--
E
--
D
-
H
-----
K
Q
L
C
C
M
Q
L
K
-----------
N
L----------
D
-----
E
-
K
C
M
C
P
A
---
I
M
M
M
L
N
EPM
W
I
------------
R
------------
M
R
D
--
Q
-----
V
-
M
S
M
A
-
H
N
L
P
I
E
C
N
L
M
-
S
Q
---------
P
C
QM----------------------------------------------------
19
HHSearch
63.64
27%
-163
- C3 -
1HYP
-
HPSE_SOYBN
A:
[6-73]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
S
C
P
------
D
L
S
I
C
L
N
I
L
GG
S
-
L
-------------
G
--
T
----------
V
D
D
C
C
A
L
I
G
-----------
G
-----------
L
G
D
I
E
A
I
-
V
C
L
C
I
Q
---
L
R
A
--------------------
L
------------
G
I
---
L
-----
N
-
L
N
R
N
L
Q
L
I
L
N
S
C
G
R
S
-
Y
P
---------
S
-------------------------------------------------------
8
Fugue
62.63
19%
-129
- C3 -
2FQ3
-
SWI3_YEAST
A:
[311-395]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
W
F
N
L
----
E
K
---
I
--
H
S
--
I
E
V
Q
S
L
P
E
F
--
F
-
T
-------------
N
--
R
--
I
-
P
-----
S
K
T
P
E
V
Y
M
R
-----------
Y
-----------
R
-----
N
-
F
M
V
N
S
Y
---
R
L
N
------
P
N
------------
E
Y
F
S
V
T
T
A
R
R
N
V
S
G
D
A
--
A
-----
A
-
L
F
R
L
-
H
K
F
L
T
K
W
G
L
I
-
N
Y
---------
Q
V
------------------------------------------------------
25
SP3
58.19
20%
-123
- C3 -
1KNG
-
CYCY_BRADU
A:
[50-193]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RPAPQ
T
A
L
P
P
L
E
G
L
----
Q
A
D
N
V
Q
--
V
P
--
G
L
D
---
P
A
A
--
F
-
K
-------------
G
-----
K
-
V
S
L
V
N
V
W
A
S
W
C
V
P
C
H
-----------
D
-----------
E
-----
A
-
P
L
L
T
E
L
---
G
K
D
------
K
R
------------
F
------------
Q
L
V
--
G
I
N
Y
KD
A
-
A
D
N
A
-
R
R
F
L
G
R
Y
G
N
P
-
F
G
---------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L
28
SP3
43.56
13%
-108
- C3 -
1F9M
-
TRXF_SPIOL
A:
[10-121]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
A
I
V
G
----
K
V
T
E
V
N
--
K
D
--
T
F
---
W
P
I
V
--
K
A
A
-------------
G
--
D
--
K
-
P
V
V
L
D
M
F
T
Q
W
C
G
P
C
K
-----------
A
-----------
M
-----
A
-
P
K
Y
E
K
L
---
A
E
E
Y
-----
L
D
V
I
----------
F
------------
L
K
L
--
D
-----
C
-
N
Q
E
N
-
K
T
L
A
K
E
L
G
I
R
V
V
P
---------
T
F
K
I
L
K
ENSVV
G
E
V
T
G
AK
Y
D
K
L
L
E
A
I
Q
A
A
R
S-------------------------
31
SP3
43.31
5%
-106
- C3 -
1EZM
-
?
?:
[1-298]
A
E
A
G
G
P
G
G
N
QKI
G
K
Y
T
Y
GSD
Y
G
P
L
I
V
N
DRCEMDDGN
V
I
T
V
DMNSSTDDSKTTPFRFACPTNTYKQVNGAYS
P
L
N
D
A
H
F
F
G
G
V
V
F
K
L
Y
R
D
WFGTSPLT
H
K
L
Y
M
K
V
HYGRSVE
N
A
Y
W
DGT
A
M
L
F
G
DGATMFYPLVS
L
D
V
A
A
H
E
V
S
H
G
F
T
E
Q
N
SGLIYRG
Q
S
G
G
M
N
E
A
F
S
D
M
A
G
E
A
A
E
F
Y
M
RGKNDFLIGYDIKKGSGALRYMDQPSRDGRSIDNASQYYNGIDVHHSS
G
V
Y
N
R
A
F
Y
L
L
A
N
S
P
G
W
D
----
T
R
---
K
--
A
F
--
E
V
F
--
V
D
A
N
--
R
-
Y
-------------
Y
--
W
--
T
-
A
-----
T
----
S
N
Y
N
-----------
S
-----------
G
-----
A
-
C
G
V
I
R
S
---
A
Q
N
----------------------------------
R
N
--
Y
-----
S
-
A
A
D
V
-
T
R
A
F
S
T
V
G
V
T
-
C
P
-----------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70........
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
TVVGGWGI
E
E
K
A
A
C
I
V
T
N
L
M
S
C
L
P
A
I
LKGSQ
P
P
A
Y
C
C
E
M
L
K
E
Q
Q
S
C
L
C
G
YIKSPTFGHYVIPQ
N
A
H
K
L
L
A
A
C
GILYPKC
38
90.59
100%
-170
- C- -
M038
-
A:
[1-139]
T
V
V
G
G
W
G
I
E
E
K
A
A
C
I
V
T
N
L
M
S
C
L
P
A
I
L
K
G
S
Q
P
P
A
Y
C
C
E
M
L
K
E
Q
Q
S
C
L
C
G
Y
I
K
S
P
T
F
G
H
Y
V
I
P
Q
N
A
H
K
L
L
A
A
C
G
I
L
Y
P
K
C
37
86.86
100%
-161
- C- -
M037
-
A:
[1-139]
T
V
V
G
G
W
G
I
E
E
K
A
A
C
I
V
T
N
L
M
S
C
L
P
A
I
L
K
G
S
Q
P
P
A
Y
C
C
E
M
L
K
E
Q
Q
S
C
L
C
G
Y
I
K
S
P
T
F
G
H
Y
V
I
P
Q
N
A
H
K
L
L
A
A
C
G
I
L
Y
P
K
C