@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 136_tII_ARATH: (2014-05-02 )
RVVKGSGEEVNVTCDATQLSSCVTAVSTGAPPSTDCCGKLKEHETCLCTYIQNPLYSSYVTSPNARKTLAACDVAYPTC
Atome Classification :
(20 SA)
-----------------------------------------------------.....---....10....--..--..---20.....-----.-.-------------.30-.--.-----.......40.-----------..-.....50..--.-.------------....--------60.------...-....70....-..-------..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------RVVKG---SG
E
E
V
N
V
T
C
D
--
A
T
--
Q
L
---
S
S
C
V
T
A
V-----S-T-------------GA--P--P-----
S
T
D
C
C
GK
L
K
E
-----------
H
E
-
T
C
L
C
T
Y
IQN--P-
L
------------
Y
S
SY--------VTS------PNA-R
K
T
L
AACDVA-YP-------TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
92.52
45%
-108
- C3 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
--------------------------------------------------------------------
A
C
Q
--
A
S
--
Q
L
---
A
V
C
A
S
A
I
-----
L
-
S
-------------
G
A
--
K
--
P
-----
S
G
E
C
C
G
N
L
R
A
-----------
Q
Q
-
G
C
F
C
Q
Y
A
K
D
--
P
-
T
------------
Y
G
Q
Y
--------
I
R
S
------
P
H
A
-
R
D
T
L
T
S
C
G
L
A
-
V
P
-------
H
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
84.73
43%
-117
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
-------------------------------------------------------------------
A
G
C
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
-----
A
-
G
-------------
G
A
--
R
--
P
-----
T
A
A
C
C
S
S
L
R
A
-----------
Q
Q
-
G
C
F
C
Q
F
A
K
D
--
P
-
R
------------
Y
G
R
Y
--------
V
N
S
------
P
N
A
-
R
K
A
V
S
S
C
G
I
A
-
L
P
-------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
84.50
42%
-118
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------
A
G
C
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
-----
A
-
G
-------------
G
A
--
R
--
P
-----
T
A
A
C
C
S
S
L
R
A
-----------
Q
Q
-
G
C
F
C
Q
F
A
K
D
--
P
-
R
------------
Y
G
R
Y
--------
V
N
S
------
P
N
A
-
R
K
A
V
S
S
C
G
I
A
-
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
SP3
81.33
36%
-118
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------
A
G
C
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
-----
A
-
G
-------------
G
A
--
R
--
P
-----
T
A
A
C
C
S
S
L
R
A
-----------
Q
Q
-
G
C
F
C
Q
F
A
K
D
--
P
-
R
------------
Y
G
R
Y
--------
V
N
S
------
P
N
A
-
R
K
A
V
S
S
C
G
I
A
-
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
80.70
34%
-102
- C3 -
2RKN
2
DIRL1_ARATH
A:
[4-77]
--------------------------------------------------------------------
L
C
G
MS
Q
D
--
E
L
---
N
E
C
K
P
A
V
-----
S
-
K
-------------
E
N
PT
S
--
P
-----
S
Q
P
C
C
T
A
L
Q
H
-----------
A
D
F
A
C
L
C
G
Y
K
N
S
--
P
-
W
------------
L
G
S
F
G-------
V
D
P
------
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
-
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
77.36
31%
-82
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
---------------------------------------------------------------
A
I
D
L
C
G
M
S
--
Q
D
--
E
L
---
N
E
C
K
P
A
V
-----
S
-
K
-------------
E
N
--
P
TS
P
-----
S
Q
P
C
C
T
A
L
Q
H
A----------
D
F
-
A
C
L
C
G
Y
K
N
S
--
P
-
W
------------
L
G
S
F
G-------
V
D
P
------
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
-
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
67.65
24%
-98
- C3 -
1T12
-
NLTP1_TOBAC
A:
[2-78]
-------------------------------------------------------------------
I
T
C
G
--
Q
V
T
S
N
L
---
A
P
C
L
A
Y
L
-----
R
-
N
-------------
T
G
-----
P
-----
L
G
R
C
C
G
G
V
K
A
L
V
N
S
A
RT
T
E
D
R
Q
I
-
A
C
T
C
--
L
K
S
--
A
-
A
-------------
G
A
I
SG------
I
N
L
------
G
K
A
-
A
G
L
P
S
T
C
G
V
N
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
65.98
22%
-87
- C3 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
-------------------------------------------------------------------
I
S
C
G
--
Q
V
A
S
A
I
---
A
P
C
I
S
Y
A
-----
R
-
G
-------------
Q
G
--
S
G-
P
-----
S
A
G
C
C
S
G
V
R
S
L
N
N
A
A
RT
T
A
D
R
R
A
-
A
C
N
C
--
L
K
N
--
A
-
A
-------------
A
G
V
SG------
L
N
A
------
G
N
A
-
A
S
I
P
S
K
C
G
V
S
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
Fugue
65.46
18%
-86
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
---------------------------------------------------P
Y
G
R
G
R
T
---
E
S
G
C
Y
Q
Q
M
E
E
--
A
E
--
M
L
---
N
H
C
G
M
Y
L
-----
M
-
K
NLGERSQVSPR
M
R
E
E
--
D
--
H
-----
K
Q
L
C
C
M
Q
L
K
N
L----------
D
E
-
K
C
M
C
P
A
I
M
M
--
M
-
L
------------
N
E
P
M
--------
W
I
R
MR
D
Q
V
M
S
M
A
-
H
N
L
P
I
E
C
N
L
M
-
S
Q
-------
P
C
QM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
61.27
27%
-102
- C3 -
1HYP
-
HPSE_SOYBN
A:
[6-73]
-------------------------------------------------------------------
P
S
C
P
------
D
L
---
S
I
C
L
N
I
L
GG---
S
-
L
-------------
G
T
-----------
V
D
D
C
C
A
L
I
G
G
LG
D
I
E
------
A
I
-
V
C
L
C
I
Q
L
R
A
-----------------
L
G
I
---------
L
N
L
------
N
R
N
L
Q
L
I
L
N
S
C
G
R
S
-
Y
P
-------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
61.08
27%
-87
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
-------------------------------------------------------------------
I
T
C
G
--
Q
V
S
S
S
L
---
A
P
C
I
P
Y
V
-----
R
-
G
-------------
G
G
--
A
--
V
-----
P
P
A
C
C
N
G
I
R
N
V
N
N
L
A
RT
T
P
D
R
Q
A
-
A
C
N
C
--
L
K
Q
--
L
-
S
-------------
A
S
V
PG------
V
N
P
------
N
N
A
-
A
A
L
P
G
K
C
G
V
S
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
SP3
60.51
16%
-66
* C3 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------
A
I
S
C
G
Q
V
A
S
--
A
I
---
A
P
C
I
S
Y
A
-----
R
-
G
-------------
Q
G
--
S
G-
P
-----
S
A
G
C
C
S
G
V
R
S
-----------
L
N
-
N
A
----
A
R
T
--
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
G
V
SG------
L
N
A
------
G
N
A
-
A
S
I
P
S
K
C
G
V
S
-
I
P
YTISTST
D
C
SRVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
55.08
26%
-53
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
-------------------------------------------------------------------------
D
S
--
L
V
---
R
P
C
L
S
Y
V
-----
Q
-
G
-------------
G
P
--
G
--
P
-----
S
G
Q
C
C
D
G
V
K
N
L
H
N
Q
ARS
Q
S
D
R
Q
S
-
A
C
N
C
L
K
G
I
A
--
R
-
G
------------
I
H
-
N
--------
L
N
E
------
D
N
A
-
R
S
I
P
P
K
C
G
V
N
-
L
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
50.96
12%
-75
- C3 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
Y
---
S
P
N
S
P
A
Q
P
Q
T
--
A
G
--
T
L
T
L
L
P
V
A
L
R
A
P
-----
V
-
T
-------------
A
G
--
Q
--
L
-----
A
V
E
N
G
H
Y
V
V
E
-----------
T
L
-
A
R
A
C
D
G
C
L
N
--
G
-
E
------------
F
A
A
L
--------
I
T
G
------
P
V
H
-
K
G
V
I
N
D
A
G
I
P
-
F
T
-------
G
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
18
HHSearch
47.57
21%
-62
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
-------------------------------------------------------------------------
Q
G
--
N
L
---
A
Q
C
I
G
F
L
-----
Q
-
K
-------------
G
G
--
V
--
V
-----
P
P
S
C
C
T
G
V
K
N
I
L
NSSRTTADR
R
A
-
V
C
S
C
L
K
A
A
A
--
G
-
A
------------
V
R
-
G
--------
I
N
P
------
N
N
A
-
E
A
L
P
G
K
C
G
V
N
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
43.92
11%
-73
- C3 -
1F9M
-
TRXF_SPIOL
A:
[10-121]
--------------------------------------------------------
M
E
---
A
I
V
G
K
V
T
E
V
N
--
K
D
--
T
F
------
W
P
I
V
-----
K
A
A
-------------
G
D
--
K
--
P
V
V
L
D
M
F
T
Q
W
C
G
P
C
K
A
-----------
M
A
-
P
K
Y
E
K
L
A
E
E
Y
-
L
-
D
V
I
----------
F
L
K
L
--------
D
C
N
------
Q
E
N
-
K
T
L
A
K
E
L
G
I
R
V
V
P
-------
T
F
K
I
L
K
ENSVV
G
E
V
T
G
AK
Y
D
K
L
L
E
A
I
Q
A
A
R
S--------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
40.74
11%
-74
- C3 -
1U78
-
TC3A_CAEEL
A:
[2-104]
----------------------------------------------------------------
P
R
G
S
A
L
S
--
D
T
--
E
R
---
A
Q
-
L
D
V
M
-----
K
-
L
-------------
L
N
--
V
--
S
-----
L
H
E
M
S
R
K
I
S
R
-----------
S
R
-
H
C
I
R
V
Y
L
K
D
--
P
V
S
------------
Y
G
T
S
KRAPRRKA
L
S
V
------
R
D
E
-
R
N
V
I
R
A
A
S
N
S
-
C
K
-------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
40.32
13%
-49
- C2 -
2JYS
-
POL_SFV1
A:
[8-98]
---------------------------------------------------Q
P
L
E
A
E
I
---
K
G
T
K
L
K
A
H
W
D
--
S
G
--
A
T
---
I
T
C
V
P
E
A
FLEDE
R
-
P
-------------
I
Q
--
T
--
M
-----
L
I
K
T
I
H
G
E
K
Q
-----------
Q
D
-
V
Y
Y
L
T
F
K
V
Q
G
R
K
-
V
------------
E
A
E
V
--------
L
A
S
------
P
Y
D
-
Y
I
L
L
N
P
S
D
V
P
-
W
L
-------
M
K
KPL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
37.89
10%
-24
- C3 -
1CBU
-
COBU_SALTY
A:
[1-180]
----------------------------------------------------M
I
L
V
T
G
G
AR
S
G
K
S
R
H
A
E
A
L
--
I
G
--
D
----
A
P
Q
V
L
Y
I
-----
A
-
T
-------------
S
Q
--
I
--
L
-----
D
D
E
M
A
A
R
I
Q
H
-----------
H
K
-
D
G
-----
R
P
--
A
-
H
------------
W
R
T
A
--------
E
C
W
------
R
H
L
-
D
T
L
I
T
A
D
L
A
P
-
D
D
-------
A
I
L
L
E
C
I
T
T
M
V
T
N
L
L
F
A
L
G
GENDPEQWD
Y
A
A
M
E
R
A
I
D
D
E
I
Q
I
L
I
A
A
C
Q
R
CP
A
K
V
V
L
V
T
N
EVGMGIVPEN
R
L
A
R
H
F
R
D
I
A
G
R
V
N
Q
R
L
A
A
A
AD
E
V
W
L
V
V
SGIGVKIK------------------------------------------------------------------------------------------
5
Fugue
34.55
16%
-55
- C3 -
2J9W
-
?
A:
[120-220]
-------------------------------HHMG
N
L
N
R
C
I
A
D
I
V
S
L
F
I
T
V
M
D
K
L
R
L
E
---
I
R
A
M
D
E
I
Q
P
D
--
L
R
--
E
L
---
M
E
T
M
N
R
M
-----
S
-
H
--------------
L
--
P
--
P
-----
D
F
E
G
R
E
K
V
S
Q
-----------
W
L
-
Q
K
L
S
S
M
S
A
-------------------
S
D
E
--------
L
D
D
------
S
Q
V
-
R
Q
M
L
F
D
L
E
S
A
-
Y
N
-------
A
F
N
R
F
L
H--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
RVVKGSG
E
E
V
N
V
T
C
D
A
T
Q
L
S
S
C
V
T
A
VSTGAPP
S
T
D
C
C
GK
L
K
E
H
E
T
C
L
C
T
Y
IQNP
L
Y
S
SYVTSPNAR
K
T
L
AACDVAYPTC
38
95.84
100%
-122
- C- -
M038
-
A:
[1-110]
R
V
V
K
G
S
G
E
E
V
N
V
T
C
D
A
T
Q
L
S
S
C
V
T
A
V
S
T
G
A
P
P
S
T
D
C
C
G
K
L
K
E
H
E
T
C
L
C
T
Y
I
Q
N
P
L
Y
S
S
Y
V
T
S
P
N
A
R
K
T
L
A
A
C
D
V
A
Y
P
T
C
41
95.48
100%
-113
- C- -
M041
-
A:
[1-152]
R
V
V
K
G
S
G
E
E
V
N
V
T
C
D
A
T
Q
L
S
S
C
V
T
A
V
S
T
G
A
P
P
S
T
D
C
C
G
K
L
K
E
H
E
T
C
L
C
T
Y
I
Q
N
P
L
Y
S
S
Y
V
T
S
P
N
A
R
K
T
L
A
A
C
D
V
A
Y
P
T
C
39
94.59
100%
-113
- C- -
M039
-
A:
[1-110]
R
V
V
K
G
S
G
E
E
V
N
V
T
C
D
A
T
Q
L
S
S
C
V
T
A
V
S
T
G
A
P
P
S
T
D
C
C
G
K
L
K
E
H
E
T
C
L
C
T
Y
I
Q
N
P
L
Y
S
S
Y
V
T
S
P
N
A
R
K
T
L
A
A
C
D
V
A
Y
P
T
C
40
94.25
100%
-107
- C- -
M040
-
A:
[1-152]
R
V
V
K
G
S
G
E
E
V
N
V
T
C
D
A
T
Q
L
S
S
C
V
T
A
V
S
T
G
A
P
P
S
T
D
C
C
G
K
L
K
E
H
E
T
C
L
C
T
Y
I
Q
N
P
L
Y
S
S
Y
V
T
S
P
N
A
R
K
T
L
A
A
C
D
V
A
Y
P
T
C