@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 137_tII_ARATH: (2014-05-02 )
TEVKLSGGEADVTCDAVQLSSCATPMLTGVPPSTECCGKLKEQQPCFCTYIKDPRYSQYVGSANAKKTLATCGVPYPTC
Atome Classification :
(20 SA)
---------------------------------------------------------------.........10...-----.--..--..---20.....--.--..--30------------.-.-----.-----------....--------..40.-----------.-----.-...--..50.----.------.-.------------..-----.-.--------60.--...-....70.-----...-..-------..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------
T
E
V
KLSGGEA
D
V
T
C
-----
D
--
A
V
--
Q
L
---SSCATPM--L--TG--V-------------P-P-----
S
-----------
T
E
C
C
--------GKLKE-----------Q-----Q-P
C
F
--
C
T
YIK----D------P-R------------
Y
S
-----
Q
-Y--------VGS--ANA-K
K
T
L
A
TC-----GVP-YP-------TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
89.16
52%
-102
- C4 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
---------------------------------------------------------------------------
A
C
-----
Q
--
A
S
--
Q
L
---
A
V
C
A
S
A
I
--
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--
S
G
--
A
-------------
K
-
P
-----
S
-----------
G
E
C
C
--------
G
N
L
R
A
-----------
Q
-----
Q
-
G
C
F
--
C
Q
Y
A
K
----
D
------
P
-
T
------------
Y
G
-----
Q
-
Y
--------
I
R
S
--
P
H
A
-
R
D
T
L
T
S
C
-----
G
L
A
-
V
P
-------
H
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
82.27
46%
-119
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
--------------------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
--
G
G
--
A
-------------
R
-
P
-----
T
-----------
A
A
C
C
--------
S
S
L
R
A
-----------
Q
-----
Q
-
G
C
F
--
C
Q
F
A
K
----
D
------
P
-
R
------------
Y
G
-----
R
-
Y
--------
V
N
S
--
P
N
A
-
R
K
A
V
S
S
C
-----
G
I
A
-
L
P
-------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
82.05
45%
-119
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
--------------------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
--
G
G
--
A
-------------
R
-
P
-----
T
-----------
A
A
C
C
--------
S
S
L
R
A
-----------
Q
-----
Q
-
G
C
F
--
C
Q
F
A
K
----
D
------
P
-
R
------------
Y
G
-----
R
-
Y
--------
V
N
S
--
P
N
A
-
R
K
A
V
S
S
C
-----
G
I
A
-
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
SP3
79.52
39%
-119
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
--------------------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
--
G
G
--
A
-------------
R
-
P
-----
T
-----------
A
A
C
C
--------
S
S
L
R
A
-----------
Q
-----
Q
-
G
C
F
--
C
Q
F
A
K
----
D
------
P
-
R
------------
Y
G
-----
R
-
Y
--------
V
N
S
--
P
N
A
-
R
K
A
V
S
S
C
-----
G
I
A
-
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
78.86
32%
-88
- C4 -
1T12
-
NLTP1_TOBAC
A:
[2-78]
--------------------------------------------------------------------------
I
T
C
-----
G
--
Q
V
T
S
N
L
---
A
P
C
L
A
Y
L
--
R
--
N
T
--
G
---------------
P
-----
L
-----------
G
R
C
C
--------
G
G
V
K
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
C
T
--
C
--
L
K
----
S
------
A
-
A
-------------
G
-----
A
-
I
SG------
I
N
L
--
G
K
A
-
A
G
L
P
S
T
C
-----
G
V
N
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
77.52
21%
-112
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
------------------------------------------------------------------
P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
--
A
E
--
M
L
---
N
H
C
G
M
Y
L
--
M
KN
L
G
--
E
-------------
R
-
S
-----
Q
VSPR
M
R
E
E
D
H
K
Q
L
C
C
--------
M
Q
L
K
N
L----------
D
-----
E
-
K
C
M
--
C
P
A
I
M
M
M
L
N
E
------
P
-
M
------------
W
I
-----
R
-
M
--------
R
D
Q
V
M
S
M
A
-
H
N
L
P
I
E
C
-----
N
L
M
-
S
Q
-------
P
C
QM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
74.64
27%
-82
- C4 -
2RKN
2
DIRL1_ARATH
A:
[4-77]
---------------------------------------------------------------------------
L
C
-----
G
MS
Q
D
--
E
L
---
N
E
C
K
P
A
V
--
S
--
K
E
--
N
PT-----------
S
-
P
-----
S
-----------
Q
P
C
C
--------
T
A
L
Q
H
-----------
A
-----
D
F
A
C
L
--
C
G
Y
K
N
----
S
------
P
-
W
------------
L
G
-----
S
-
F
G-------
V
D
P
--
E
L
A
-
S
A
L
P
K
Q
C
-----
G
L
A
-
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
70.09
30%
-87
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
--------------------------------------------------------------------------
I
T
C
-----
G
--
Q
V
S
S
S
L
---
A
P
C
I
P
Y
V
--
R
--
G
G
--
G
-------------
A
-
V
-----
P
-----------
P
A
C
C
--------
N
G
I
R
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
C
N
--
C
--
L
K
----
Q
------
L
-
S
-------------
A
-----
S
-
V
PG------
V
N
P
--
N
N
A
-
A
A
L
P
G
K
C
-----
G
V
S
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
69.34
23%
-77
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------------------------
A
I
D
L
C
G
M
-----
S
--
Q
D
--
E
L
---
N
E
C
K
P
A
V
--
S
--
K
E
NP
T
-------------
S
-
P
-----
S
-----------
Q
P
C
C
--------
T
A
L
Q
H
A----------
D
-----
F
-
A
C
L
--
C
G
Y
K
N
----
S
------
P
-
W
------------
L
G
-----
S
-
F
G-------
V
D
P
--
E
L
A
-
S
A
L
P
K
Q
C
-----
G
L
A
-
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
Fugue
66.43
17%
-73
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
-----
E
--
A
E
--
M
L
---
N
H
C
G
M
Y
L
--
M
--
K
N
--
L
GERSQVSPR
M
R
E
E
D
-
H
-----
K
-----------
Q
L
C
C
--------
M
Q
L
K
N
L----------
D
-----
E
-
K
C
M
--
C
P
A
I
M
----
M
M
L
N
EPM
W
-
I
------------
R
M
-----
R
-
D
--------
Q
V
M
--
S
M
A
-
H
N
L
P
I
E
C
-----
N
L
M
-
S
Q
-------
P
C
QM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
65.74
25%
-80
- C4 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
--------------------------------------------------------------------------
I
S
C
-----
G
--
Q
V
A
S
A
I
---
A
P
C
I
S
Y
A
--
R
--
G
Q
--
G
-------------
S
G
P
-----
S
-----------
A
G
C
C
--------
S
G
V
R
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
C
N
--
C
--
L
K
----
N
------
A
-
A
-------------
A
-----
G
-
V
SG------
L
N
A
--
G
N
A
-
A
S
I
P
S
K
C
-----
G
V
S
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
64.98
23%
-88
- C4 -
1HYP
-
HPSE_SOYBN
A:
[6-73]
--------------------------------------------------------------------------
P
S
C
-----
P
------
D
L
---
S
I
C
L
N
I
L
GG
S
--
L
G
--
T
---------------------
V
-----------
D
D
C
C
--------
A
L
I
G
G
-----------
L
G
D
I
E
A
I
-
V
C
L
--
C
I
Q
L
R
----
A
---------------------
L
G
-----
I
----------
L
N
L
--
N
R
N
L
Q
L
I
L
N
S
C
-----
G
R
S
-
Y
P
-------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
SP3
61.24
17%
-63
* C4 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
-------------------------------------------------------------------------
A
I
S
C
-----
G
Q
V
A
S
--
A
I
---
A
P
C
I
S
Y
A
--
R
--
G
Q
--
G
-------------
S
G
P
-----
S
-----------
A
G
C
C
--------
S
G
V
R
S
-----------
L
-----
N
-
N
A
------
A
R
----
T
------
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
-----
G
-
V
SG------
L
N
A
--
G
N
A
-
A
S
I
P
S
K
C
-----
G
V
S
-
I
P
YTISTST
D
C
SRVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
57.67
26%
-41
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
-------------------------------------------------------------------------------------
D
S
--
L
V
---
R
P
C
L
S
Y
V
--
Q
--
G
G
--
P
-------------
G
-
P
-----
S
-----------
G
Q
C
C
--------
D
G
V
K
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
C
N
--
C
L
K
G
I
----
A
------
R
-
G
------------
I
H
-------
N
--------
L
N
E
--
D
N
A
-
R
S
I
P
P
K
C
-----
G
V
N
-
L
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
56.16
23%
-39
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
-------------------------------------------------------------------------------------
Q
G
--
N
L
---
A
Q
C
I
G
F
L
--
Q
--
K
G
--
G
-------------
V
-
V
-----
P
-----------
P
S
C
C
--------
T
G
V
K
N
I
L
NSSRTTADR
R
-----
A
-
V
C
S
--
C
L
K
A
A
----
A
------
G
-
A
------------
V
R
-------
G
--------
I
N
P
--
N
N
A
-
E
A
L
P
G
K
C
-----
G
V
N
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
54.66
13%
-55
- C4 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
----------V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
Y
S
P
N
S
P
A
Q
P
Q
-----
T
--
A
G
--
T
L
T
L
L
P
V
A
L
R
A
P
--
V
--
T
A
--
G
-------------
Q
-
L
-----
A
-----------
V
E
N
G
--------
H
Y
V
V
E
-----------
T
-----
L
-
A
R
A
--
C
D
G
C
L
----
N
------
G
-
E
------------
F
A
-----
A
-
L
--------
I
T
G
--
P
V
H
-
K
G
V
I
N
D
A
-----
G
I
P
-
F
T
-------
G
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
30
SP3
48.90
17%
-30
- C4 -
1KNG
-
CYCY_BRADU
A:
[50-193]
----------------------------------------------------------RPAPQ
T
A
L
P
P
L
E
G
L
Q
A
D
N
V
-----
Q
--
V
P
--
G
L
---
D
---
P
A
A
--
F
--
K
G
----------------
K
-
V
S
L
V
N
V
W
-----------
A
S
W
C
--------
V
P
C
H
D
-----------
E
-----
A
-
P
L
L
--
T
E
L
G
K
----
D
------
K
-
R
------------
F
Q
L
V
G
I
N
Y
-
K
--------
D
A
A
--
D
N
A
-
R
R
F
L
G
R
Y
-----
G
N
P
-
F
G
-------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L-------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
45.95
16%
-46
- C2 -
2OPC
1
?
A:
[13-127]
-----------------------------------------------------EG
Y
T
R
F
Y
RSP
T
A
S
V
I
L
S
G
L
V
K
V
K
W
-----
D
--
N
E
--
Q
M
---
T
M
P
L
F
K
W
--
I
--
G
G
--
E
-------------
Q
-
A
-----
E
-----------
E
L
H
F
C
V
H
I
A
H
SS
G
P
K
L
N
-----------
R
-----
A
-
R
S
L
GT
V
N
S
N
M
----
D
------
Q
-
H
------------
W
A
-----
Q
A
Q
--------
R
N
S
--
G
A
T
-
R
R
T
I
E
G
F
HLFEN
D
I
P
N
F
P
-------
D
Y
I
K
I
K
L
V
P
KT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
45.49
12%
-65
- C4 -
1U78
-
TC3A_CAEEL
A:
[2-104]
-----------------------------------------------------------------------
P
R
G
S
A
L
-----
S
--
D
T
--
E
R
---
A
Q
-
L
D
V
M
--
K
--
L
L
--
N
-------------
V
-
S
-----
L
-----------
H
E
M
S
--------
R
K
I
S
R
-----------
S
-----
R
-
H
C
I
--
R
V
Y
L
K
----
D
------
P
V
S
------------
Y
G
-----
T
-
S
KRAPRRKA
L
S
V
--
R
D
E
-
R
N
V
I
R
A
A
-----
S
N
S
-
C
K
-------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
45.27
17%
-17
* C5 *
1SJW
1
?
A:
[2-143]
S
R
Q
T
E
I
V
R
R
M
V
S
A
F
N
T
GRTDDVDEYIHPDYLNPATLEHG
I
H
T
G
P
K
A
F
A
Q
L
V
G
W
V
R
A
T
FSEE
A
R
L
E
E
V
R
I
E
E
R
G
P
W
V
K
-----
A
--
Y
L
--
V
L
---
Y
G
R
H
V
G
R
--
L
--
V
G
--
M
-------------
P
-
P
-----
T
-----------------------
D
R
R
F
S
-----------
G
-----
E
-
Q
V
H
--
L
M
R
I
V
----
D
------
G
-
K
------------
I
R
-----
D
-
H
--------
R
D
W
--
P
D
F
-
Q
G
T
L
R
Q
L
-----
G
D
P
-
W
P
-------
D
D
EGWR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
T
E
V
KLSGGEA
D
V
T
C
D
A
V
Q
L
SSCATPMLTGVPP
S
T
E
C
C
GKLKEQQP
C
F
C
T
YIKDPR
Y
S
Q
YVGSANAK
K
T
L
A
TCGVPYPTC
38
58.67
100%
-13
- C- -
M038
-
A:
[4-116]
T
E
V
K
L
S
G
G
E
A
D
V
T
C
D
A
V
Q
L
S
S
C
A
T
P
M
L
T
G
V
P
P
S
T
E
C
C
G
K
L
K
E
Q
Q
P
C
F
C
T
Y
I
K
D
P
R
Y
S
Q
Y
V
G
S
A
N
A
K
K
T
L
A
T
C
G
V
P
Y
P
T
C
41
53.83
100%
-8
- C- -
M041
-
A:
[4-119]
T
E
V
K
L
S
G
G
E
A
D
V
T
C
D
A
V
Q
L
S
S
C
A
T
P
M
L
T
G
V
P
P
S
T
E
C
C
G
K
L
K
E
Q
Q
P
C
F
C
T
Y
I
K
D
P
R
Y
S
Q
Y
V
G
S
A
N
A
K
K
T
L
A
T
C
G
V
P
Y
P
T
C
39
52.89
100%
-17
- C- -
M039
-
A:
[4-116]
T
E
V
K
L
S
G
G
E
A
D
V
T
C
D
A
V
Q
L
S
S
C
A
T
P
M
L
T
G
V
P
P
S
T
E
C
C
G
K
L
K
E
Q
Q
P
C
F
C
T
Y
I
K
D
P
R
Y
S
Q
Y
V
G
S
A
N
A
K
K
T
L
A
T
C
G
V
P
Y
P
T
C