@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 138_tII_ARATH: (2014-05-02 )
EETQSCVPMELMPCLPAMTKREQPTKDCCENLIKQKTCLCDYIKNPLYSMFTISLVARKVLETCNVPYTSC
Atome Classification :
(20 SA)
-------------------------------------------------------------......-----.--..--10---..--.....--.--20-------------.--.-.-----.-----------....30...-----------..-...40...----.-.-.------------..------50--------..-.--...-..60.....-.-.-.-------70-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------EETQSC-----V--
P
M
--
E
L
---
M
P--CLPAM--T--KR-------------E--Q-P-----
T
-----------
K
D
C
C
E
N
L
I
K
-----------
Q
K
-
T
C
L
C
D
Y
I
K----N-
P
-
L
------------
Y
S
------
M
F
--------
T
I
-
S
--
L
V
A
-
R
K
V
L
E
TCNV-P-Y-T-------SC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
91.56
33%
-110
- C2 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
-----------------------------------------------------------------
A
C
-----
Q
--
A
S
--
Q
L
---
A
V
--
C
A
S
A
I
--
L
--
S
G
-------------
A
--
K
-
P
-----
S
-----------
G
E
C
C
G
N
L
R
A
-----------
Q
Q
-
G
C
F
C
Q
Y
A
K
----
D
-
P
-
T
------------
Y
G
------
Q
Y
--------
I
R
-
S
--
P
H
A
-
R
D
T
L
T
S
C
G
L
-
A
-
V
-
P
-------
H
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
83.97
26%
-142
- C2 -
1T12
-
NLTP1_TOBAC
A:
[2-78]
----------------------------------------------------------------
I
T
C
-----
G
--
Q
V
T
S
N
L
---
A
P
--
C
L
A
Y
L
--
R
--
N
T
-------------
G
----
P
-----
L
-----------
G
R
C
C
G
G
V
K
A
L
V
N
S
A
RT
T
E
D
R
Q
I
-
A
C
T
C
--
L
K
----
S
-
A
-
A
-------------
G
------
A
I
SG------
I
N
-
L
--
G
K
A
-
A
G
L
P
S
T
C
G
V
-
N
-
I
-
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
83.71
31%
-94
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
----------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
---
T
V
--
C
T
G
A
I
--
A
--
G
G
-------------
A
--
R
-
P
-----
T
-----------
A
A
C
C
S
S
L
R
A
-----------
Q
Q
-
G
C
F
C
Q
F
A
K
----
D
-
P
-
R
------------
Y
G
------
R
Y
--------
V
N
-
S
--
P
N
A
-
R
K
A
V
S
S
C
G
I
-
A
-
L
-
P
-------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
83.33
30%
-94
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
---
T
V
--
C
T
G
A
I
--
A
--
G
G
-------------
A
--
R
-
P
-----
T
-----------
A
A
C
C
S
S
L
R
A
-----------
Q
Q
-
G
C
F
C
Q
F
A
K
----
D
-
P
-
R
------------
Y
G
------
R
Y
--------
V
N
-
S
--
P
N
A
-
R
K
A
V
S
S
C
G
I
-
A
-
L
-
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
83.26
30%
-123
- C2 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
---------------------------------------------------------------------------
Q
D
--
E
L
---
N
E
--
C
K
P
A
V
--
S
--
K
E
-------------
N
PT
S
-
P
-----
S
-----------
Q
P
C
C
T
A
L
Q
H
-----------
A
D
F
A
C
L
C
G
Y
K
N
----
S
-
P
-
W
------------
L
G
------
S
F
G-------
V
D
-
P
--
E
L
A
-
S
A
L
P
K
Q
C
G
L
-
A
-
N
-
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
SP3
82.68
29%
-94
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
---
T
V
--
C
T
G
A
I
--
A
--
G
G
-------------
A
--
R
-
P
-----
T
-----------
A
A
C
C
S
S
L
R
A
-----------
Q
Q
-
G
C
F
C
Q
F
A
K
----
D
-
P
-
R
------------
Y
G
------
R
Y
--------
V
N
-
S
--
P
N
A
-
R
K
A
V
S
S
C
G
I
-
A
-
L
-
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
79.85
27%
-114
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------
A
I
D
L
C
GM---
S
--
Q
D
--
E
L
---
N
E
--
C
K
P
A
V
--
S
KE
N
P
-------------
T
--
S
-
P
-----
S
-----------
Q
P
C
C
T
A
L
Q
H
A----------
D
F
-
A
C
L
C
G
Y
K
N
----
S
-
P
-
W
------------
L
G
------
S
F
--------
G
V
D
P
--
E
L
A
-
S
A
L
P
K
Q
C
G
L
-
A
-
N
A
P
-------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
78.32
22%
-118
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-80]
---------------------------------------------------------------
A
I
S
C
-----
G
--
Q
V
A
S
A
I
---
A
P
--
C
I
S
Y
A
--
R
--
G
Q
-------------
G
--
S
G
P
-----
S
-----------
A
G
C
C
S
G
V
R
S
L
N
N
A
A
RT
T
A
D
R
R
A
-
A
C
N
C
--
L
K
----
N
-
A
-
A
-------------
A
------
G
V
SG------
L
N
-
A
--
G
N
A
-
A
S
I
P
S
K
C
G
V
-
S
-
I
-
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
71.74
25%
-122
- C2 -
1HYP
-
HPSE_SOYBN
A:
[6-73]
----------------------------------------------------------------
P
S
C
-----
P
------
D
L
---
S
I
--
C
L
N
I
L
GG
S
--
L
G
-------------
T
----------
V
-----------
D
D
C
C
A
L
I
G
G
LG
D
I
E
------
A
I
-
V
C
L
C
I
Q
L
R
----
A
----------------
L
G
------
I
---------
L
N
-
L
--
N
R
N
L
Q
L
I
L
N
S
C
G
R
-
S
-
Y
-
P
-------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
70.20
22%
-120
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-79]
---------------------------------------------------------------
M
I
T
C
-----
G
--
Q
V
S
S
S
L
---
A
P
--
C
I
P
Y
V
--
R
--
G
G
-------------
G
--
A
-
V
-----
P
-----------
P
A
C
C
N
G
I
R
N
V
N
N
L
A
RT
T
P
D
R
Q
A
-
A
C
N
C
--
L
K
----
Q
-
L
-
S
-------------
A
------
S
V
PG------
V
N
-
P
--
N
N
A
-
A
A
L
P
G
K
C
G
V
-
S
-
I
-
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
69.61
16%
-88
- C2 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
YSPN
S
P
A
Q
P
Q
-----
T
--
A
G
--
T
L
T
L
L
P
V
--
A
L
R
A
P
--
V
--
T
A
-------------
G
--
Q
-
L
-----
A
-----------
V
E
N
G
H
Y
V
V
E
-----------
T
L
-
A
R
A
C
D
G
C
L
----
N
-
G
-
E
------------
F
A
------
A
L
--------
I
T
-
G
--
P
V
H
-
K
G
V
I
N
D
A
G
I
-
P
-
F
-
T
-------
G
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
4
Fugue
68.82
22%
-103
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
---------------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
-----
E
--
A
E
--
M
L
---
N
H
--
C
G
M
Y
L
--
M
--
K
N
LGERSQVSPR
M
R
E
E
--
D
-
H
-----
K
-----------
Q
L
C
C
M
Q
L
K
N
L----------
D
E
-
K
C
M
C
P
A
I
M
----
M
-
M
-
L
------------
N
E
PMWIRM
R
D
--------
Q
V
-
M
--
S
M
A
-
H
N
L
P
I
E
C
N
L
-
M
-
S
-
Q
-------
P
C
QM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
68.39
21%
-134
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
--
A
E
--
M
L
---
N
H
--
C
G
M
Y
L
--
M
KN
L
G
-------------
E
--
R
-
S
-----
Q
VSPR
M
R
E
E
D
H
K
Q
L
C
C
M
Q
L
K
N
L----------
D
E
-
K
C
M
C
P
A
I
M
M
M
L
N
E
-
P
-
M
------------
W
I
------
R
M
--------
R
D
-
Q
V
M
S
M
A
-
H
N
L
P
I
E
C
N
L
-
M
-
S
-
Q
-------
P
C
QM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
66.53
15%
-83
* C2 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------
A
I
S
C
-----
G
Q
V
A
S
--
A
I
---
A
P
--
C
I
S
Y
A
--
R
--
G
Q
-------------
G
--
S
G
P
-----
S
-----------
A
G
C
C
S
G
V
R
S
-----------
L
N
-
N
A
----
A
R
----
T
-
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
------
G
V
SG------
L
N
-
A
--
G
N
A
-
A
S
I
P
S
K
C
G
V
-
S
-
I
-
P
YTISTST
D
C
SRVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
60.07
21%
-67
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
---------------------------------------------------------------------------
D
S
--
L
V
---
R
P
--
C
L
S
Y
V
--
Q
--
G
G
-------------
P
--
G
-
P
-----
S
-----------
G
Q
C
C
D
G
V
K
N
L
H
N
Q
ARS
Q
S
D
R
Q
S
-
A
C
N
C
L
K
G
I
----
A
-
R
-
G
------------
I
H
-------
N
--------
L
N
-
E
--
D
N
A
-
R
S
I
P
P
K
C
G
V
-
N
-
L
-
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
53.19
14%
-92
- C2 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
---------------GPMRRERGRQGDSSSC
E
R
Q
V
D
R
VNL
K
P
C
E
Q
H
I
M
Q
R
I
MGEQEQYDSY
D
I
R
S
T
R
-----
S
--
S
D
--
Q
Q
---
Q
R
--
C
C
D
E
L
--
N
--
E
M
-------------
E
--
N
-
T
-----
Q
-----------
G
C
M
C
E
A
L
Q
Q
-----------
I
M
-
E
N
Q
C
D
R
L
Q
----
D
-
R
-
Q
-------------
M
------
V
Q
--------
Q
F
-
K
--
R
E
L
-
M
S
L
P
Q
Q
C
N
F
R
A
-
P
-
Q
-------
R
C
DLDVSGGRCS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
52.83
16%
-86
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
---------------------------------------------------------------------------
Q
G
--
N
L
---
A
Q
--
C
I
G
F
L
--
Q
--
K
G
-------------
G
--
V
-
V
-----
P
-----------
P
S
C
C
T
G
V
K
N
I
L
NSSRTTADR
R
A
-
V
C
S
C
L
K
A
A
----
A
-
G
-
A
------------
V
R
-------
G
--------
I
N
-
P
--
N
N
A
-
E
A
L
P
G
K
C
G
V
-
N
-
I
-
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
47.37
14%
-65
- C2 -
1U78
-
TC3A_CAEEL
A:
[2-104]
-------------------------------------------------------------
P
R
G
S
A
L
-----
S
--
D
T
--
E
R
---
A
Q
---
L
D
V
M
--
K
--
L
L
-------------
N
--
V
-
S
-----
L
-----------
H
E
M
S
R
K
I
S
R
-----------
S
R
-
H
C
I
R
V
Y
L
K
----
D
-
P
V
S
------------
Y
G
------
T
S
KRAPRRKA
L
S
-
V
--
R
D
E
-
R
N
V
I
R
A
A
S
N
-
S
-
C
-
K
-------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
46.35
15%
-61
- C2 -
1KNG
-
CYCY_BRADU
A:
[50-193]
---------------------------------------------------RPAPQ
T
A
L
P
P
L
E
G
L
Q
A
-----
D
--
N
V
--
Q
V
---
P
G
--
L
D
P
A
A
--
F
--
K
G
----------------
K
-
V
S
L
V
N
V
W
-----------
A
S
W
C
V
P
C
H
D
-----------
E
A
-
P
L
L
T
E
L
G
K
----
D
-
K
-
R
------------
F
Q
L
V
G
I
N
-
Y
K
--------
D
A
-
A
--
D
N
A
-
R
R
F
L
G
R
Y
G
N
-
P
-
F
-
G
-------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L-------------------------------------------------------------------------------------------------------------------------------------------
30
SP3
45.89
7%
-100
- C2 -
1F9M
-
TRXF_SPIOL
A:
[10-121]
-------------------------------------------------------------
M
E
A
I
V
G
-----
K
--
V
T
--
E
V
---
N
K
DT
F
W
P
I
V
--
K
A
-
A
G
-------------
D
--
K
-
P
V
V
L
D
M
F
-----------
T
Q
W
C
G
P
C
K
A
-----------
M
A
-
P
K
Y
E
K
L
A
E
----
E
Y
L
-
D
V
I
----------
F
L
------
K
L
--------
D
C
-
N
--
Q
E
N
-
K
T
L
A
K
E
L
G
I
-
R
V
V
-
P
-------
T
F
K
I
L
K
ENSVV
G
E
V
T
G
AK
Y
D
K
L
L
E
A
I
Q
A
A
R
S--------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
EETQSCV
P
M
E
L
M
PCLPAMTKREQP
T
K
D
C
C
E
N
L
I
K
Q
K
T
C
L
C
D
Y
I
KN
P
L
Y
S
M
F
T
I
S
L
V
A
R
K
V
L
E
TCNVPYTSC
38
99.07
100%
-163
- C- -
M038
-
A:
[1-122]
E
E
T
Q
S
C
V
P
M
E
L
M
P
C
L
P
A
M
T
K
R
E
Q
P
T
K
D
C
C
E
N
L
I
K
Q
K
T
C
L
C
D
Y
I
K
N
P
L
Y
S
M
F
T
I
S
L
V
A
R
K
V
L
E
T
C
N
V
P
Y
T
S
C
42
95.63
100%
-133
- C- -
M042
-
A:
[1-154]
E
E
T
Q
S
C
V
P
M
E
L
M
P
C
L
P
A
M
T
K
R
E
Q
P
T
K
D
C
C
E
N
L
I
K
Q
K
T
C
L
C
D
Y
I
K
N
P
L
Y
S
M
F
T
I
S
L
V
A
R
K
V
L
E
T
C
N
V
P
Y
T
S
C
39
92.61
100%
-124
- C- -
M039
-
A:
[1-121]
E
E
T
Q
S
C
V
P
M
E
L
M
P
C
L
P
A
M
T
K
R
E
Q
P
T
K
D
C
C
E
N
L
I
K
Q
K
T
C
L
C
D
Y
I
K
N
P
L
Y
S
M
F
T
I
S
L
V
A
R
K
V
L
E
T
C
N
V
P
Y
T
S
C
41
90.16
100%
-130
- C- -
M041
-
A:
[1-154]
E
E
T
Q
S
C
V
P
M
E
L
M
P
C
L
P
A
M
T
K
R
E
Q
P
T
K
D
C
C
E
N
L
I
K
Q
K
T
C
L
C
D
Y
I
K
N
P
L
Y
S
M
F
T
I
S
L
V
A
R
K
V
L
E
T
C
N
V
P
Y
T
S
C