@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 139_tII_ARATH: (2014-05-02 )
SPILIKSEVSSSCIPTELMPCLPAMTTGGQPTKDCCDKLIEQKECLCGYINNPLYSTFVSSPVARKVLEVCNIPYPSC
Atome Classification :
(20 SA)
-------------------------------------------------------------.........10...--..--...20-------------....--..-----..--30.-----........40----.-----------..-......50..-.------------..-----..--------.60-.------...-.....70....-----.-------..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------S
P
I
L
I
KSEVSSSCI--
P
T
--
E
L
M
PC-------------LPAM--TT-----GG--Q-P-----
T
K
D
C
C
D
K
L
I
-----
E
-----------
Q
K
-
E
C
L
C
G
Y
INN
P
-
L
------------
Y
S
-----
T
F
--------VS--
S
------
P
V
A
-
R
K
V
L
E
V
CNIPY-----P-------SC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
91.97
34%
-125
- C4 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
------------------------------------------------------------------------
A
C
Q
--
A
S
--
Q
L
A
V
C
-------------
A
S
A
I
--
L
S
-----
G
A
--
K
-
P
-----
S
G
E
C
C
G
N
L
R
-----
A
-----------
Q
Q
-
G
C
F
C
Q
Y
A
K
D
P
-
T
------------
Y
G
-----
Q
Y
--------
I
R
--
S
------
P
H
A
-
R
D
T
L
T
S
C
G
L
A
V
-----
P
-------
H
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
88.90
37%
-117
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
-----------------------------------------------------------------------
A
G
C
N
--
A
G
--
Q
L
T
V
C
-------------
T
G
A
I
--
A
G
-----
G
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
-----
A
-----------
Q
Q
-
G
C
F
C
Q
F
A
K
D
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
--
S
------
P
N
A
-
R
K
A
V
S
S
C
G
I
A
L
-----
P
-------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
88.55
36%
-117
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-----------------------------------------------------------------------
A
G
C
N
--
A
G
--
Q
L
T
V
C
-------------
T
G
A
I
--
A
G
-----
G
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
-----
A
-----------
Q
Q
-
G
C
F
C
Q
F
A
K
D
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
--
S
------
P
N
A
-
R
K
A
V
S
S
C
G
I
A
L
-----
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
SP3
85.95
32%
-117
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-----------------------------------------------------------------------
A
G
C
N
--
A
G
--
Q
L
T
V
C
-------------
T
G
A
I
--
A
G
-----
G
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
-----
A
-----------
Q
Q
-
G
C
F
C
Q
F
A
K
D
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
--
S
------
P
N
A
-
R
K
A
V
S
S
C
G
I
A
L
-----
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
81.30
24%
-122
* C4 *
1T12
-
NLTP1_TOBAC
A:
[2-78]
-----------------------------------------------------------------------
I
T
C
G
--
Q
V
T
S
N
L
A
P
C
-------------
L
A
Y
L
--
R
N
-----
T
G
----
P
-----
L
G
R
C
C
G
G
V
K
-----
A
L
V
N
S
A
RT
T
E
D
R
Q
I
-
A
C
T
C
--
L
K
S
A
-
A
-------------
G
-----
A
I
SG------
I
N
--
L
------
G
K
A
-
A
G
L
P
S
T
C
G
V
N
I
-----
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
80.92
33%
-133
- C4 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
-----------------------------------------------------------------------------
Q
D
--
E
L
N
E
C
-------------
K
P
A
V
--
S
K
-----
E
N
PT
S
-
P
-----
S
Q
P
C
C
T
A
L
Q
-----
H
-----------
A
D
F
A
C
L
C
G
Y
K
N
S
P
-
W
------------
L
G
-----
S
F
G-------
V
D
--
P
------
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
N
-----
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
77.96
29%
-104
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-------------------------------------------------------------------
A
I
D
L
C
G
M
S
--
Q
D
--
E
L
N
E
C
-------------
K
P
A
V
--
S
K
-----
E
N
PT
S
-
P
-----
S
Q
P
C
C
T
A
L
Q
-----
H
A----------
D
F
-
A
C
L
C
G
Y
K
N
S
P
-
W
------------
L
G
-----
S
F
G-------
V
D
--
P
------
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
N
-----
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
73.91
30%
-137
- C4 -
1HYP
-
HPSE_SOYBN
A:
[6-73]
-----------------------------------------------------------------------
P
S
C
P
------
D
L
S
I
C
-------------
L
N
I
L
GG
S
L
-----
G
T
----------
V
D
D
C
C
A
L
I
G
G
LG
D
I
E
-----------
A
I
-
V
C
L
C
I
Q
L
R
A
---------------
L
G
-----
I
---------
L
N
--
L
------
N
R
N
L
Q
L
I
L
N
S
C
G
R
S
Y
-----
P
-------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
69.98
22%
-112
- C4 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
-----------------------------------------------------------------------
I
S
C
G
--
Q
V
A
S
A
I
A
P
C
-------------
I
S
Y
A
--
R
G
-----
Q
G
--
S
G
P
-----
S
A
G
C
C
S
G
V
R
-----
S
L
N
N
A
A
RT
T
A
D
R
R
A
-
A
C
N
C
--
L
K
N
A
-
A
-------------
A
-----
G
V
SG------
L
N
--
A
------
G
N
A
-
A
S
I
P
S
K
C
G
V
S
I
-----
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
66.30
25%
-119
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
-----------------------------------------------------------------------
I
T
C
G
--
Q
V
S
S
S
L
A
P
C
-------------
I
P
Y
V
--
R
G
-----
G
G
--
A
-
V
-----
P
P
A
C
C
N
G
I
R
-----
N
V
N
N
L
A
RT
T
P
D
R
Q
A
-
A
C
N
C
--
L
K
Q
L
-
S
-------------
A
-----
S
V
PG------
V
N
--
P
------
N
N
A
-
A
A
L
P
G
K
C
G
V
S
I
-----
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
SP3
63.90
16%
-94
- C4 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
---V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
Y
S
P
N
S
P
A
Q
P
Q
T
A
G
T
L
--
T
L
--
L
P
V
A
L
-------------
R
A
P
V
--
T
A
-----
G
---
Q
-
L
-----
A
V
E
N
G
H
Y
V
V
-----
E
-----------
T
L
-
A
R
A
C
D
G
C
L
N
G
-
E
------------
F
A
-----
A
L
--------
I
T
--
G
------
P
V
H
-
K
G
V
I
N
D
A
G
I
P
F
-----
T
-------
G
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
3
Fugue
60.62
16%
-108
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--------------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
E
A
E
M
L
N
H
C
G
--
M
Y
--
L
M
K
N
L
-------------
G
E
R
S
--
Q
V
SPR
M
R
E
E
--
D
-
H
-----
K
Q
L
C
C
M
Q
L
K
-----
N
L----------
D
E
-
K
C
M
C
P
A
I
M
M
M
-
L
------------
N
E
-----
P
M
--------
W
I
--
R
MR
D
Q
V
M
S
M
A
-
H
N
L
P
I
E
C
N
L
M
S
-----
Q
-------
P
C
QM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
59.38
25%
-75
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
-----------------------------------------------------------------------------
D
S
--
L
V
R
P
C
-------------
L
S
Y
V
--
Q
G
-----
G
P
--
G
-
P
-----
S
G
Q
C
C
D
G
V
K
-----
N
L
H
N
Q
ARS
Q
S
D
R
Q
S
-
A
C
N
C
L
K
G
I
A
R
-
G
------------
I
H
------
N
--------
L
N
--
E
------
D
N
A
-
R
S
I
P
P
K
C
G
V
N
L
-----
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
58.80
18%
-101
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
-----------------------------------------------------------------------------
Q
G
--
N
L
A
Q
C
-------------
I
G
F
L
--
Q
K
-----
G
G
--
V
-
V
-----
P
P
S
C
C
T
G
V
K
-----
N
I
L
NSSRTTADR
R
A
-
V
C
S
C
L
K
A
A
A
G
-
A
------------
V
R
------
G
--------
I
N
--
P
------
N
N
A
-
E
A
L
P
G
K
C
G
V
N
I
-----
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
SP3
57.72
15%
-85
- C4 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
----------------------------------------------------------------------
A
I
S
C
G
Q
V
A
S
--
A
I
A
P
C
-------------
I
S
Y
A
--
R
G
-----
Q
G
--
S
G
P
-----
S
A
G
C
C
S
G
V
R
-----
S
-----------
L
N
-
N
A
----
A
R
T
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
-----
G
V
SG------
L
N
--
A
------
G
N
A
-
A
S
I
P
S
K
C
G
V
S
I
-----
P
YTISTST
D
C
SRVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
52.10
17%
-64
- C4 -
3FBL
-
Y132_AFV1Y
A:
[1-82]
----------------------------------------------------------Y
H
K
L
R
L
A
I
K
E
I
C
K
T
D
G
I
--
P
N
--
I
K
W
G
M
-------------
Y
I
A
F
--
G
E
-----
K
L
--
L
-
K
-----
S
Y
L
K
M
K
A
G
S
-----
A
-----------
S
S
-
D
M
I
A
E
Y
I
N
N
A
-
I
------------
S
A
-----
F
S
S
RTG----
I
S
--
Q
------
E
T
A
-
Q
K
I
A
D
F
I
T
S
N
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
SP3
52.09
17%
-77
- C4 -
1U78
-
TC3A_CAEEL
A:
[2-104]
--------------------------------------------------------------------
P
R
G
S
A
L
S
--
D
T
--
E
R
A
Q
--------------
L
D
V
M
--
K
L
-----
L
N
--
V
-
S
-----
L
H
E
M
S
R
K
I
S
-----
R
-----------
S
R
-
H
C
I
R
V
Y
L
K
D
P
V
S
------------
Y
G
-----
T
S
KRAPRRKA
L
S
--
V
------
R
D
E
-
R
N
V
I
R
A
A
S
N
S
C
-----
K
-------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
SP3
38.54
12%
-102
- C4 -
1KZF
-
ESAI_ERWST
A:
[1-210]
M
L
E
L
F
D
V
S
Y
E
E
L
Q
T
TFS
D
R
L
G
W
E
V
I
C
S
Q
GMESDEFDGPG
T
R
Y
I
L
G
I
C
EGQLV
C
S
V
R
F
T
S
LD
R
P
N
M
I
T
H
T
F
Q
H
C
F
S
--
D
V
--
T
L
P
A
Y
G
T
E
S
S
RFFVD
K
A
R
A
R
A
L
--
L
G
-----
E
H
--
Y
-
P
-----------
I
S
Q
-----
V
-----------
L
F
-
L
A
M
V
N
W
A
Q
N
N
-
A
------------
Y
G
-----
N
I
--------
Y
T
I
V
S
------
R
A
M
-
L
K
I
L
T
R
S
G
W
Q
I
KVI
K
E
A
-------
F
L
TEK
E
R
I
Y
L
L
T
L
P
AG
Q
D
D
K
Q
Q
L
G
G
D
V
V
S
R
T
GCPPVAVTTWP
L
T
L
P
V----------------------------------------------------------------------------------------------------------------------------------------------------
19
SP3
36.86
12%
-73
- C4 -
1TC3
-
TC3A_CAEEL
C:
[1-51]
--------------------------------------------------------------------
P
R
G
S
A
L
S
--
D
T
--
E
R
A
Q
--------------
L
D
V
M
--
K
L
-----
L
N
--
V
-
S
-----
L
H
E
M
S
R
K
I
S
-----
R
-----------
S
R
-
H
C
I
R
V
Y
L
K
D
P
-
V
-------------------
S
Y
--------
G
T
--
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
SP3
33.04
11%
-72
- C4 -
1KNG
-
CYCY_BRADU
A:
[50-193]
----------------------------------------------------------RPA
P
Q
T
A
L
P
P
L
E
G
L
Q
A
D
--
N
V
--
Q
V
P
G
L
-------------
D
P
A
A
--
F
K
-----
G
---
K
-
V
S
L
V
N
V
W
A
S
W
C
V
P
C
H
-----
D
-----------
E
A
-
P
L
L
T
E
L
G
K
D
K
-
R
------------
F
Q
L
V
G
I
N
Y
K
--------
D
A
--
A
------
D
N
A
-
R
R
F
L
G
R
Y
G
N
P
F
-----
G
-------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L-------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70.......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
S
P
I
L
I
KSEVSSSCI
P
T
E
L
M
PCLPAMTTGGQP
T
K
D
C
C
D
K
L
I
E
Q
K
E
C
L
C
G
Y
INN
P
L
Y
S
T
F
VS
S
P
V
A
R
K
V
L
E
V
CNIPYPSC
37
97.25
100%
-154
- C- -
M037
-
A:
[11-105]
----------
S
S
C
I
P
T
E
L
M
P
C
L
P
A
M
T
T
G
G
Q
P
T
K
D
C
C
D
K
L
I
E
Q
K
E
C
L
C
G
Y
I
N
N
P
L
Y
S
T
F
V
S
S
P
V
A
R
K
V
L
E
V
C
N
I
P
Y
P
S
C
36
94.96
100%
-158
- C- -
M036
-
A:
[11-105]
----------
S
S
C
I
P
T
E
L
M
P
C
L
P
A
M
T
T
G
G
Q
P
T
K
D
C
C
D
K
L
I
E
Q
K
E
C
L
C
G
Y
I
N
N
P
L
Y
S
T
F
V
S
S
P
V
A
R
K
V
L
E
V
C
N
I
P
Y
P
S
C
38
94.02
100%
-150
- C- -
M038
-
A:
[1-101]
S
P
I
L
I
K
S
E
V
S
S
S
C
I
P
T
E
L
M
P
C
L
P
A
M
T
T
G
G
Q
P
T
K
D
C
C
D
K
L
I
E
Q
K
E
C
L
C
G
Y
I
N
N
P
L
Y
S
T
F
V
S
S
P
V
A
R
K
V
L
E
V
C
N
I
P
Y
P
S
C