@TOME V2.3
(Nov 2016)
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-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 147_tIII_ARATH: (2014-05-02 )
QECGNDLANVQVCAAMVLPGSGRPNSECCAALQSTNRDCLCNALRAATSLPSLCNLPPVDCGINA
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......--.--.10.......------.-------20-.------.---------.--------.-----------.-------....30....--..----------.--.40..----------.------------.--------------------------------.----------------------...50-.......-.-.-60.....----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QE
C
G
N
D
L
--
A
--
N
V
Q
V
C
A
A
M
VL------P-------G--S------G---------R--------P-----------
N
-------
S
E
C
C
A
A
L
Q
ST--
N
R
----------
D
--
C
L
C
N
A
----------
L
------------
R
--------------------------------
A
----------------------
A
TSL--PSLCNLP-P-V-D-CGINA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
81.65
41%
-191
- C3 -
2DS2
-
?
B:
[8-70]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
Q
C
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N
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L
R
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--
D
R
----------
P
--
C
V
C
P
V
----------
L
------------
R
Q
A
A
Q
Q
V
L
Q
R
Q
IIQG
P
Q
Q
L
R
R
L
F
D
---------
A
----------------------
A
R
N
L
--
P
N
I
C
N
I
P
-
N
I
G
-
A
-
C
P
F
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
78.90
25%
-178
- C3 -
1W2Q
-
CONG_ARAHY
A:
[14-120]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
C
E
R
Q
V
D
R
V
--
N
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K
P
C
E
Q
H
I
M
------
Q
R
I
MG---
E
QE
Q
------
Y
DSYD-----
I
--------
R
-----------
S
TR
S
S
D
Q
Q
Q
R
C
C
D
E
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N
E
M
EN
T
Q
----------
G
--
C
M
C
E
A
----------
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------------
Q
Q
I
M
E
N
Q
CDRLQDRQMV
Q
Q
F
K
R
-----------
E
----------------------
L
M
S
L
--
P
Q
Q
C
N
F
R
-
A
-
P
-
Q
R
C
D
L
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
78.09
32%
-176
- C3 -
1HSS
-
IAA1_WHEAT
A:
[14-104]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--
P
--
A
L
P
A
C
R
P
L
L
R
------
L
Q
C
N
----
G
--
S
------
Q
---------
V
--------
P
E
A
V
--------
L
-------
R
D
C
C
Q
Q
L
A
H
I
--
S
E
----------
W
--
C
R
C
G
A
----------
L
------------
Y
S
M
L
D
S
M
Y
K
E
HGAFPRCR
R
E
V
V
K
L
---------
T
----------------------
A
A
S
I
--
T
A
V
C
R
L
P
-
I
-
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
77.93
30%
-192
- C3 -
1BEA
-
ITRF_MAIZE
A:
[14-109]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
--
N
--
P
L
P
S
C
R
W
Y
V
T
S
R
TCG-
I
-------
G
--
P
------
R
---------
L
--------
P
W
P
E
L
-------
K
-------
R
R
C
C
R
E
L
A
D
I
--
P
A
----------
Y
--
C
R
C
T
A
----------
L
------------
S
I
L
M
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G
A
I
P
P
G
PDAQL
E
G
R
L
E
D
LPGCP
R
E
V
Q
R
G
F
----------------------
A
A
T
L
VT
E
A
E
C
N
L
A
-
T
-
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
77.31
37%
-149
- C3 -
3OB4
-
?
A:
[429-490]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
C
C
N
E
L
N
E
F
EN
N
Q
----------
R
--
C
M
C
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----------
L
------------
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I
M
E
N
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S
DRLQGRQ
Q
E
Q
Q
F
K
R
-----------
E
----------------------
L
R
N
L
--
P
Q
Q
C
G
L
R
A
P
-
Q
-
R
-
C
D
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
73.34
32%
-141
- C3 -
2LVF
-
?
A:
[16-108]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
M
L
S
H
C
R
M
Y
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R
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Q
M
E
--
E
-------
S
--
T
Y-----
Q
---------
T
MPRRGMEP
H
-----------
M
-------
S
E
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E
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L
E
G
M
--
D
E
----------
S
--
C
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E
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----------
L
------------
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M
M
M
R
M
M
Q
Q
K
EM
Q
P
R
G
E
Q
M
R
R
M
M
R
---------
L
----------------------
A
E
N
I
--
P
S
R
C
N
L
S
-
P
-
M
-
R
-
C
P
M
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
72.81
31%
-114
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AI
D
L
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M
S
Q
--
D
--
E
L
N
E
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A
V
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K-----
E
-------
N
--
P
------
T
---------
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--------
P
-----------
S
-------
Q
P
C
C
T
A
L
Q
H
A
--
D
F
----------
A
--
C
L
C
G
Y
----------
K
NSP
W
L
G
S
F
GVD
P
E
--------------------------------
L
----------------------
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
-
P
-
T
-
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
69.88
28%
-161
- C3 -
1SM7
-
?
A:
[13-108]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
H
L
R
A
C
Q
Q
W
I
R
Q
QLAG
S
P
-------
F
--
S
------
E
NQWGPQQGP
S
--------
L
-----------
R
-------
E
Q
C
C
N
E
L
Y
Q
E
--
D
Q
----------
V
--
C
V
C
P
T
----------
L
------------
K
--------------------------------
Q
A
A
K
S
V
RVQGQHGPFQST
R
I
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
-
Q
I
G
-
T
-
C
P
F
I
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
69.00
29%
-144
- C3 -
1S6D
-
2SS8_HELAN
A:
[19-102]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
--
M
L
N
H
C
G
M
Y
L
M
------
K
NLGERSQ
V
--
S
------
P
---------
R
M
R
E
E
D
---
H
-----------
K
-------
Q
L
C
C
M
Q
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K
N
L
--
D
E
----------
K
--
C
M
C
P
A
----------
I
------------
M
M
M
L
N
EPMWIRMR
D
Q
V
M
S
---------------
M
----------------------
A
H
N
L
--
P
I
E
C
N
L
M
-
S
-
Q
-
P
-
C
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
67.19
31%
-110
- C3 -
2RKN
2
DIRL1_ARATH
A:
[3-73]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
Q
--
D
--
E
L
N
E
C
K
P
A
V
S
------
K
-------
E
--
N
------
P
T--------
S
--------
P
-----------
S
-------
Q
P
C
C
T
A
L
Q
H
A
--
D
F
----------
A
--
C
L
C
G
Y
----------
K
------------
N
SP
W
L
G
S
F
GVD
P
E
--------------------
L
----------------------
A
S
A
L
--
P
K
Q
C
G
L
A
-
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
65.88
30%
-122
- C3 -
1N89
1
NLT2G_WHEAT
A:
[4-67]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
S
--
Q
L
A
V
C
A
S
A
I
L
------
S
-------
G
--
A
----------------
K
--------
P
-----------
S
-------
G
E
C
C
G
N
L
R
A
Q
--
Q
-----------
G
--
C
F
C
Q
Y
----------
A
------------
K
DPTY
G
Q
Y
I
R
S
P
---------------------
H
----------------------
A
R
D
T
--
L
T
S
C
G
L
A
-
V
-
P
-
H
-
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
64.00
26%
-116
- C3 -
1M7X
-
GLGB_ECOLI
A:
[117-728]
THLRPYETL
G
A
H
A
D
T
MDG
V
T
G
T
R
F
S
V
W
APNAR
R
V
S
V
V
GQFNYWDGRR
H
P
M
R
L
R
KESG
I
W
E
L
F
I
P
GAHNG
Q
L
Y
K
Y
E
M
I
D
ANG
N
L
R
L
K
S
DPYAFEAQMRPE
T
A
S
L
I
C
G
L
PE
K
V
V
Q
T
E
E
R
K
K
A
N
QFD
A
P
I
S
I
Y
E
V
HLGSWRRHTDNN
F
W
L
S
Y
R
E
L
A
D
Q
L
V
P
Y
A
K
W
M
GFT
H
L
E
L
L
P
INEHPFDGSWGYQPTGLYAPTRRFGT
R
D
D
F
R
Y
F
I
D
A
A
H
A
A
G
L
N
V
I
L
DWVPGHFPTDDFALAEFDGTNLYEHSTLIYNYGR
R
E
V
S
N
F
L
V
G
N
A
L
Y
W
I
E
R
F
G
I
D
A
--
L
--
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A
V
A
S
M
I
Y
--------------
R
--
G
------
G
---------
R
--------
E
-----------
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-------
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E
A
I
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F
L
R
N
T
--
N
R
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--------------------------------
A
----------------------
V
T
M
A
--
E
E
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T
D
F
P
-
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R
P
Q
D
M
GGLGFWYKWN
L
G
W
M
H
D
T
L
D
Y
M
K
LDPVYRQYH
H
D
K
L
T
F
G
I
L
Y
N
YTENFVLPLSHDEVVHGKKSILDRMPGD
A
W
Q
K
F
A
N
L
R
A
Y
Y
G
W
M
W
A
FP
G
K
K
L
L
F
M
GNEFAQGREWNHDASLDWHLLEGGDN
W
H
H
G
V
Q
R
L
V
R
D
L
N
L
T
Y
R
HHKAMHELDFDPYGFEWLVVDDKERS
V
L
I
F
V
R
R
D
KEG
N
E
I
I
V
A
S
N
FTP
V
P
R
H
D
Y
R
F
G
I
NQP
G
K
W
R
E
ILNTDSMHYHGSNAGNGG
T
V
H
S
D
EIASHGRQ
H
S
L
S
L
T
L
P
P
L
A
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I
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E
A
E
11
HHSearch
62.58
32%
-156
- C3 -
1PNB
-
?
B:
[11-74]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-------
E
Q
C
C
N
E
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Y
Q
E
--
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----------
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--
C
V
C
P
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----------
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------------
K
Q
A
A
K
S
V
R
VQGQHGPFQSTRIYQ----------
I
----------------------
A
K
N
L
--
P
N
V
C
N
M
K
-
Q
-
I
G
T
-
C
P
F
I
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
62.12
28%
-103
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[2-75]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
C
G
H
V
D
--
S
--
L
V
R
P
C
L
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Y
V
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------
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-------
G
---------
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---------
G
--------
P
-----------
S
-------
G
Q
C
C
D
G
V
K
N
L
--
H
N
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ARS
Q
S
D
R
Q
S
A
--
C
N
C
L
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----------
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------------
I
A
R
G
IHNLN
E
D
----------------------
N
----------------------
A
R
S
I
--
P
P
K
C
G
V
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27
Fugue
61.71
28%
-89
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
E
A
EML
N
H
C
G
M
Y
L
--
M
--
K
N
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E
R
S
Q
V
S
------
P
-------
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--
M
------
R
---------
E
--------
E
-----------
D
H
K
-----
Q
L
C
C
M
Q
L
K
N
L
--
D
E
----------
K
--
C
M
C
P
A
----------
I
------------
M
--------------------------------
M
M
L
N
EPMWIRMR
D
Q
V
M
S
M
-----
A
H
N
L
--
P
I
E
C
N
L
M
-
S
-
Q
-
P
-
C
Q
M
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
61.61
27%
-92
- C3 -
1AFH
-
NLTP_MAIZE
A:
[3-77]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
C
G
Q
V
A
--
S
--
A
I
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I
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------
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---------
G
--------
P
-----------
S
-------
A
G
C
C
S
G
V
R
S
L
--
N
N
A
A
RT
T
A
D
R
R
A
A
--
C
N
C
L
K
N
A
A
A
G
VSGLN
A
------------
G
--------------------------------
N
----------------------
A
A
S
I
--
P
S
K
C
G
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
60.72
28%
-119
- C3 -
1T12
-
NLTP1_TOBAC
A:
[3-75]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
G
Q
V
T
--
S
--
N
L
A
P
C
L
A
Y
L
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------
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-------
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--
G
-------------------------
P
-----------
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-------
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G
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--
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RT
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T
C
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----------
S
A
A
G
A
ISGIN
L
--
G
--------------------------------
K
----------------------
A
A
G
L
--
P
S
T
C
G
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
58.88
26%
-117
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[2-75]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
G
Q
V
Q
--
G
--
N
L
A
Q
C
I
G
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------
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-------
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---------
G
---------
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--------
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-----------
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-------
P
S
C
C
T
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I
--
L
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SSRTTADR--
R
A
V
C
S
C
L
K
A
A
A
G
A
VRGIN
P
------------
N
--------------------------------
N
----------------------
A
E
A
L
--
P
G
K
C
G
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
58.55
26%
-99
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[2-69]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
C
N
A
G
------
Q
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T
G
A
I
A
------
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-------
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--
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----------------
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--------
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-----------
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-------
A
A
C
C
S
S
L
R
A
Q
---
Q
----------
G
--
C
F
C
Q
F
----------
A
------------
K
DPRYGRYVNSP---------------------
N
----------------------
A
R
K
A
--
V
S
S
C
G
I
A
-
L
-
P
-
T
-
C
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
57.02
23%
-93
- C3 -
1PSY
-
2SS_RICCO
A:
[16-120]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Q
C
R
Q
E
V
--
Q
RK
D
L
S
S
C
E
R
Y
L
R
------
Q
S
S
S
R
---
R
--
S
T
GEEVL
R
---------
M
--------
P
GDENQQQESQQ
L
-------
Q
Q
C
C
N
Q
V
K
Q
V
--
R
D
----------
E
--
C
Q
C
E
A
----------
I
------------
K
Y
I
AE
D
Q
I
Q
Q
G
QLHGEE
S
E
R
V
A
Q
----------
R
----------------------
A
G
E
I
--
V
S
S
C
G
V
------
R
-
C
M
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
QE
C
G
N
D
L
A
N
V
Q
V
C
A
A
M
VLPGSGRP
N
S
E
C
C
A
A
L
Q
ST
N
R
D
C
L
C
N
A
L
R
A
A
TSLPSLCNLPPVDCGINA
41
96.34
100%
-164
- C- -
M041
-
A:
[1-131]
Q
E
C
G
N
D
L
A
N
V
Q
V
C
A
A
M
V
L
P
G
S
G
R
P
N
S
E
C
C
A
A
L
Q
S
T
N
R
D
C
L
C
N
A
L
R
A
A
T
S
L
P
S
L
C
N
L
P
P
V
D
C
G
I
N
A
44
94.94
100%
-161
- C- -
M044
-
A:
[1-131]
Q
E
C
G
N
D
L
A
N
V
Q
V
C
A
A
M
V
L
P
G
S
G
R
P
N
S
E
C
C
A
A
L
Q
S
T
N
R
D
C
L
C
N
A
L
R
A
A
T
S
L
P
S
L
C
N
L
P
P
V
D
C
G
I
N
A
42
94.55
100%
-151
- C- -
M042
-
A:
[1-131]
Q
E
C
G
N
D
L
A
N
V
Q
V
C
A
A
M
V
L
P
G
S
G
R
P
N
S
E
C
C
A
A
L
Q
S
T
N
R
D
C
L
C
N
A
L
R
A
A
T
S
L
P
S
L
C
N
L
P
P
V
D
C
G
I
N
A