@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 164_tV_WHEAT: (2014-05-02 )
AGECGRVPADRMALKLAPCAAATQNPRAKVAPGCCAQIRSIGRSPKCLCAVMLSSTARQAGVKPAVAMTIPKRCALANRPIGYKCGPYTLP
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....---....10----...--.--.----....20.---------------...---..-----------------.---------------------.-----------------30...------------......40.---.--------.---------.---....50...-----...-------------.------.---------60-----------.---------.---.-......70-......--------...80........----90----
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGECG---RVPA
D
-----
R
M
A
--
L
--
K
----LAPCAAA---------------TQN---PR-----------------A---------------------K-----------------V-AP
G
------------
C
C
A
Q
I
R
SIG---R--------S---------
P
---
K
C
L
C
A
V
M
L
S
-----
S
T
A
-------------
R
------Q---------A------------G---------V---K-P
A
V
A
M
T
I
--
P
K
R
CAL--------ANRPIGYKCGPYT----LP----
32
SP3
87.96
21%
-125
* C4 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
-----
Q
V
A
--
S
--
A
----
I
A
P
C
I
S
Y
---------------
A
R
G
---
Q
G
-----------------
S
---------------------
G
-----------------
P
-
S
A
G
------------
C
C
S
G
V
R
S
L
N
N
A
A
R
--------
T
---------
T
A
D
R
R
A
A
C
N
C
L
K
N
-----
A
A
A
-------------
G
------
V
---------
S
------------
G
---------
L
---
N
-
A
G
N
A
A
S
I
--
P
S
K
C
G
V
--------
S
---
I
P
Y
T
I
S
T
S
T
DCSR
V
N
----
3
Fugue
87.27
25%
-131
- C4 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
C
Y
PGQ
A
F
Q
V
P
AL
P
A
C
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--
L
--
R
----
L
Q
C
N
G
S
-----------------
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---
P
------------------
E
---------------------
A
-----------------
V
-
L
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------------
C
C
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A
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I
-------------
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---
W
C
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A
L
Y
S
-----
M
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M
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E
HGAFPRCR
R
------
E
---------
V
------------
V
---------
K
---
L
-
T
A
A
S
I
T
A
----
V
C
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P
I
V
VDASG
D
G
A
Y
V
C
K
D
V
A
A
Y
P
----
D
A
----
17
HHSearch
77.63
25%
-103
- C4 -
1T12
-
NLTP1_TOBAC
A:
[3-78]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
G
-----
Q
V
T
--
S
--
N
----
L
A
P
C
L
A
Y
---------------
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N
---
T
G
---------------------------------------------------------
P
-
L
G
R
------------
C
C
G
G
V
K
A
L
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---
N
--------
S
A
RT
T
E
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Q
-
I
---
A
C
T
C
--
L
K
S
------
A
A
-------------
G
------
A
---------
I
S-----------
G
---------
I
---
N
-
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G
K
A
A
G
L
--
P
S
T
C
G
V
--------
N
I
P
--------------------
31
HHSearch
71.50
22%
-108
- C4 -
1B1U
-
IAAT_ELECO
A:
[16-110]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
----
L
D
S
C
R
W
Y
---------------
V
S
T
---
R
T
CGVGPR-----------
L
A
T
Q
------------------
E
-----------------
M
-
K
A
R
------------
C
C
R
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L
E
A
I
-------------
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---------
A
---
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-----
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----------
T
------
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---------
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E
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RLLQDLP
G
CP
R
Q
-----
V
Q
--
R
A
F
A
P
K
L
V
T
--
E
V
E
C
N
L
--------
A
T
I
H
G
------------------
1
Fugue
69.70
27%
-75
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
---
I
D
L
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-----
M
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--
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--
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----
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N
E
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A
V--------------
S
K
E
---
N
P
-----------------
T
---------------------
S
-----------------
P
-
S
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------------
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T
A
L
Q
H
A
-------------
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---------
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---
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W
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-------------
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------
S
---------
F
------------
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---------
V
---
D
-
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
--------
A
N
A
P
---
T
C
--------------
14
HHSearch
68.38
25%
-91
- C4 -
1AFH
-
NLTP_MAIZE
A:
[3-80]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
C
G
-----
Q
V
A
--
S
--
A
----
I
A
P
C
I
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Y
---------------
A
R
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---
Q
G
-----------------
S
---------------------
G
-----------------
P
-
S
A
G
------------
C
C
S
G
V
R
S
L
N
---
N
A
-------
A
RT
T
A
D
R
R
--
A
---
A
C
N
C
--
L
K
N
------
A
A
-------------
A
------
G
---------
V
S-----------
G
---------
L
---
N
-
A
G
N
A
A
S
I
--
P
S
K
C
G
V
--------
S
I
P
--------------------
16
HHSearch
67.96
26%
-100
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
G
-----
Q
V
S
--
S
--
S
----
L
A
P
C
I
P
Y
---------------
V
R
G
---
G
------------------
G
---------------------
A
-----------------
V
-
P
P
A
------------
C
C
N
G
I
R
N
V
N
---
N
L
A
RT
T
P
D
R
Q
---------
A
---
A
C
N
C
--
L
K
Q
------
L
S
-------------
A
------
S
---------
V
P-----------
G
---------
V
---
N
-
P
N
N
A
A
A
L
--
P
G
K
C
G
V
--------
S
I
P
--------------------
26
HHSearch
67.12
26%
-110
- C4 -
1HSS
-
IAA1_WHEAT
A:
[16-106]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
----
L
P
A
C
R
P
L
---------------
L
R
L
---
Q
C
N
GSQVP-----------
E
---------------------
A
-----------------
V
-
L
R
D
------------
C
C
Q
Q
L
A
H
I
-------------
S
---------
E
---
W
C
R
C
G
A
L
Y
S
-----
M
L
D
-------------
S
M
Y
K
---
E
---------
H
-------------GAFPRCR
R
E
V
---
V
-
K
L
T
A
A
S
I
--
T
A
V
C
R
L
--------
P
I
V
V
D
------------------
11
HHSearch
66.32
27%
-76
- C4 -
2RKN
2
DIRL1_ARATH
A:
[2-75]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
L
C
G
-----
M
S
Q
--
D
--
E
----
L
N
E
C
K
P
A
---------------
V
S
K
---
E
N
P----------------
T
---------------------
S
-----------------
P
-
S
Q
P
------------
C
C
T
A
L
Q
H
A
-------------
D
---------
F
---
A
C
L
C
G
Y
K
N
S
-----
P
W
L
-------------
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------
S
---------
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------------
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---------
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---
D
-
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
--------
A
N
A
P
-------------------
8
Fugue
66.31
18%
-97
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
---
T
E
S
G
C
-----
Y
Q
Q
--
M
--
E
E
A
EM
L
N
H
C
G
M
Y
---------------
L
M
K
---
N
L
-----------------
G
---------------------
E
-----------------
R
-
S
Q
V
SPR
M
R
E
E
D
H
K
Q
L
C
C
M
Q
L
K
N
L
-------------
D
---------
E
---
K
C
M
C
P
A
I
M
M
M
L
N
EP
M
W
I
-------------
R
------
M
---------
R
------------
D
---------
Q
---
V
-
M
S
M
A
H
N
L
--
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I
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--------
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----
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C
Q
M
------------
22
HHSearch
65.91
16%
-104
- C4 -
1W2Q
-
CONG_ARAHY
A:
[16-112]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
E
-----
R
Q
V
D
R
V
--
N
----
L
K
P
C
E
Q
H
---------------
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M
Q
---
R
I
-----------------
M
---------------------
G
EQEQYDSYDIRSTR
S
S
D
Q
-
Q
Q
R
------------
C
C
D
E
L
N
E
M
E
---
N
--------
T
---------
Q
---
G
C
M
C
E
A
L
Q
Q
-----
I
M
E
-------------
N
Q
CD---
R
---------
L
Q-----------
D
RQ-------
M
V
Q
Q
F
-
K
R
E
L
M
S
L
--
P
Q
Q
C
N
F
--------
R
----------------------
29
HHSearch
65.24
21%
-98
- C4 -
1BEA
-
ITRF_MAIZE
A:
[16-109]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
----
L
P
S
C
R
W
Y
---------------
V
T
S
---
R
T
CGIG-------------
P
R--------------------
L
P
W
P
E
-------------
L
-
K
R
R
------------
C
C
R
E
L
A
D
I
-------------
P
---------
A
---
Y
C
R
C
T
A
L
S
I
-----
L
M
D
G
A
I
----------
P
------
P
G
PDAQL
E
G
R
L
------------
E
D
LPGCP
R
E
-
V
---
Q
-
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
--------
A
T
I
--------------------
6
Fugue
63.51
13%
-81
- C4 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPMRRERGR
Q
G
D
S
S
---
S
C
E
R
Q
-----
V
D
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--
V
--
N
----
L
K
P
C
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H
---------------
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M
Q
---
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I
MGEQEQYDSYDIRSTR
S
S
---------------------
D
-----------------
Q
-
Q
Q
R
------------
C
C
D
E
L
N
E
M
E
---
N
--------
T
---------
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---
G
C
M
C
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A
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CDRLQDR----
Q
------
M
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------------
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---------
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---
F
-
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--
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C
N
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--------
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A
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---
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----
S
G
GRCS
27
HHSearch
62.51
19%
-141
- C4 -
1SM7
-
?
A:
[14-100]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
----
L
R
A
C
Q
Q
W
---------------
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R
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---
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L
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A
G
S
P
F
S
E
NQWGPQQGP------
S
-----------------
L
-
R
E
Q
------------
C
C
N
E
L
Y
Q
E
-------------
D
---------
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---
V
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-----
A
A
K
-------------
S
V
RVQG-
Q
---------
H
------------
G
PFQST----
R
---
I
-
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
--------
K
Q
---------------------
12
HHSearch
62.21
25%
-93
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[2-78]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
G
-----
Q
V
Q
--
G
--
N
----
L
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---
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------------------
G
---------------------
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-----------------
V
-
P
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------------
C
C
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---
N
SSRTTADR
R
---------
A
---
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C
S
C
--
L
K
------
A
A
A
-------------
G
------
A
---------
V
R-----------
G
---------
I
---
N
-
P
N
N
A
E
A
L
--
P
G
K
C
G
V
--------
N
I
P
--------------------
30
HHSearch
61.97
24%
-93
- C4 -
2LVF
-
?
A:
[16-101]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
M
----
L
S
H
C
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Y
---------------
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M
E
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YQTMPRRGME-----------
P
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---------
E
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-------------
M
M
Q
Q
K
EM
Q
---------
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R
-----------
G
E
Q
M
R
-----
R
---
M
-
M
R
L
A
E
N
I
--
P
S
R
C
N
L
--------
S
----------------------
40
SP3
61.67
18%
-71
- C4 -
1E19
1
CPKA_PYRFU
A:
[2-314]
G
K
R
V
V
I
A
L
G
GNALQQRGQKGS
Y
E
E
M
M
D
N
V
R
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T
A
R
Q
I
A
E
I
I
A
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GYE
V
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M
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A
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A
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YG
I
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D
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A
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A
M
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G
W
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M
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A
L
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M
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K
V
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T
I
I
T
Q
T
I
V
D
KNDPAFQNPT
K
P
V
G
P
FYD
E
E
T
A
K
R
L
A
R
E
KG
W
I
V
K
EDSGR
G
W
R
R
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V
P
SPDPKGHVE
A
E
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L
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GVIVIASGGGGV
P
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DG
E
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----
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A
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DVN
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---
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------------
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---
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--------
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GHFKAGSM
G
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---
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A
A
I
--------
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F
I
-------------
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----------------
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------------
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---------
G
---
E
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-
A
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A
--------
V
E
A
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----
L
P
----
15
HHSearch
60.52
18%
-89
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[2-78]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
C
G
-----
H
V
D
--
S
--
L
----
V
R
P
C
L
S
Y
---------------
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Q
G
---
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------------------
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---------------------
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-----------------
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-
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------------
C
C
D
G
V
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---
N
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ARS
Q
S
D
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---------
S
---
A
C
N
C
L
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I
A
---------------------
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------
G
---------
I
H-----------
N
---------
L
---
N
-
E
D
N
A
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--
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P
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--------
N
L
P
--------------------
28
HHSearch
59.83
15%
-98
- C4 -
1PSY
-
2SS_RICCO
A:
[16-116]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Q
C
R
-----
Q
E
V
--
Q
RK
D
----
L
S
S
C
E
R
Y
---------------
L
R
Q
---
S
S
-----------------
S
R
R
S
T
GEEVLRMPGDENQQQES
Q
-----------------
Q
-
L
Q
Q
------------
C
C
N
Q
V
K
Q
V
-------------
R
---------
D
---
E
C
Q
C
E
A
I
K
Y
-----
I
A
E
D
Q
I
Q
Q
G
QLHG---
E
------
E
---------
S
------------
E
---------
R
---
V
-
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
-------------------------------
21
HHSearch
59.61
19%
-115
- C4 -
1HYP
-
HPSE_SOYBN
A:
[10-79]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
----
L
S
I
C
L
N
I
---------------
L
G
G
---
S
L
-----------------
G
---------------------
T
-------------------
V
D
D
------------
C
C
A
L
I
G
G
L
G
---
D
I
E
------
A
---------
I
---
V
C
L
C
I
Q
L
R
A
---------------------
L
------
G
---------
I
----------------------
L
---
N
-
L
N
R
N
L
Q
L
I
-
L
N
S
C
G
R
---------
S
Y
P
S
N
A
T
C
P
R
------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AGECGRVPA
D
R
M
A
L
K
LAPCAAATQNPRAKVAP
G
C
C
A
Q
I
R
SIGRS
P
K
C
L
C
A
V
M
L
S
S
T
A
R
QAGVKP
A
V
A
M
T
I
P
K
R
CALANRPIGYKCGPYTLP
45
95.87
100%
-122
- C- -
M045
-
A:
[1-165]
A
G
E
C
G
R
V
P
A
D
R
M
A
L
K
L
A
P
C
A
A
A
T
Q
N
P
R
A
K
V
A
P
G
C
C
A
Q
I
R
S
I
G
R
S
P
K
C
L
C
A
V
M
L
S
S
T
A
R
Q
A
G
V
K
P
A
V
A
M
T
I
P
K
R
C
A
L
A
N
R
P
I
G
Y
K
C
G
P
Y
T
L
P
44
48.61
100%
-39
- C- -
M044
-
A:
[3-158]
A
G
E
C
G
R
V
P
A
D
R
M
A
L
K
L
A
P
C
A
A
A
T
Q
N
P
R
A
K
V
A
P
G
C
C
A
Q
I
R
S
I
G
R
S
P
K
C
L
C
A
V
M
L
S
S
T
A
R
Q
A
G
V
K
P
A
V
A
M
T
I
P
K
R
C
A
L
A
N
R
P
I
G
Y
K
C
G
P
Y
T
L
P
43
47.16
100%
-32
- C- -
M043
-
A:
[3-158]
A
G
E
C
G
R
V
P
A
D
R
M
A
L
K
L
A
P
C
A
A
A
T
Q
N
P
R
A
K
V
A
P
G
C
C
A
Q
I
R
S
I
G
R
S
P
K
C
L
C
A
V
M
L
S
S
T
A
R
Q
A
G
V
K
P
A
V
A
M
T
I
P
K
R
C
A
L
A
N
R
P
I
G
Y
K
C
G
P
Y
T
L
P