@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 178_tVI_ARATH: (2014-05-02 )
DLRKGCYDLGITVLMGCPDSIDKKLPAPPTPSEGCCTLVRTIGMKCVCEIVNKKIEDTIDMQKLVNVAAACGRPLAPGSQCGSYRVPGA
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------.....-....10--.--.-.....---.20..-----.----.--------------.------...-----30-----.-----------.---------.......40-------..--.----------.----------.-...---.50-.--..-...--.--.-------------60--------------...----......70---.----....----.----..80..-----------......-------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------DLRK
G
-
C
Y
D
LG
I
--
T
--V-LMGCP---
D
S
I
DK-----K----L--------------P------APP-----T------P-----------S---------
E
G
C
C
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L
V
R
--------
T
I
--
G
----------
M
----------
K
-
C
V
C
---
E
I
V
-
N
--
K
K
-
I
E
D
--
T
--
I
-------------
D
---------------
M
Q
K
----
L
V
N
V
A
A
AC---G----RPLA----P----GSQCGS-----------YRVPGA-------------------------------------------------------------------------------------
1
Fugue
88.58
25%
-124
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------------------------------------------
A
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--------
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---
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A
----
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T
--
C
--------------------------------------------------------------------------------------------------------
27
HHSearch
86.77
23%
-113
- C3 -
1PSY
-
2SS_RICCO
A:
[16-116]
----------------------------------------------------------------------------------------------------
Q
Q
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R-
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C
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-----
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---
S
--------------
R
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S
T
GEE
V
L
R
-----
M
------
P
GDENQQQESQQ
L
---------
Q
Q
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C
N
Q
V
K
--------
Q
V
--
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----------
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-
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---
E
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--
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--
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--
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QLHGEE
S
E
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-
V
---------------
A
Q
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----
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C
---
G
----
V
------------------------------------------------------------------------------------------------------------------------
19
HHSearch
80.87
21%
-106
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[2-90]
-----------------------------------------------------------------------------------------------------
T
-
C
G
Q
V
Q
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--
N
--
L
--
A
Q
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---
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-----
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----
G
-----------------------------
V
------
V
-----------
P
---------
P
S
C
C
T
G
V
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--------
N
I
--
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----------
N
SSRTTADR
R
A
V
-
C
S
C
---
L
K
A
-----
A
-
A
G
A
VR
G
--
I
-------------
N
---------------
P
N
N
----
A
E
A
L
P
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---
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----
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N
I
P
YKIS
T
----
S
T
N
C
N
S
-----------
I
------------------------------------------------------------------------------------------
7
Fugue
80.43
18%
-107
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--------------------------------------------------------------------------------------------P
Y
G
R
G
R
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------
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-----------
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PR
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---
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M
A
---
H
----
N
L
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----
E
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NLM
S
Q
P
C
Q
M
------------------------------------------------------------------------------------------------------
11
HHSearch
76.70
24%
-114
- C3 -
2RKN
2
DIRL1_ARATH
A:
[2-75]
---------------------------------------------------------------------------------------------------
I
D
L
-
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--
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--
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-------
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---------
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--------
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-------------
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---------------
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---
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A
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A
----
P
----------------------------------------------------------------------------------------------------------------
15
HHSearch
74.98
21%
-101
- C3 -
1T12
-
NLTP1_TOBAC
A:
[3-90]
-----------------------------------------------------------------------------------------------------
T
-
C
G
Q
V
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S
--
N
----
L
A
P
C
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---
A
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-----
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----
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------------------------------------
P
-----------
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---------
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C
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--------
A
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--
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----------
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-----
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A
--
I
SG
I
-------------
N
---------------
L
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----
A
A
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C
---
G
----
V
N
I
P
YKIS
P
----
S
T
D
C
S
K
-----------
V
------------------------------------------------------------------------------------------
16
HHSearch
74.63
19%
-112
- C3 -
1AFH
-
NLTP_MAIZE
A:
[3-92]
-----------------------------------------------------------------------------------------------------
S
-
C
G
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A
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--
A
----
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C
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---
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----
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--------------
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--------------
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------
P
-----------
S
---------
A
G
C
C
S
G
V
R
--------
S
L
--
N
----------
N
A
A
RT
T
A
D
R
R
A
A
-
C
N
C
-----
L
-
K
--
N
A
-
A
A
G
--
V
SG
L
-------------
N
---------------
A
G
N
----
A
A
S
I
P
S
K
C
---
G
----
V
S
I
P
Y
T
I
S
T
----
S
T
D
C
S
R
-----------
V
------------------------------------------------------------------------------------------
21
HHSearch
74.54
21%
-124
- C3 -
1S6D
-
2SS8_HELAN
A:
[9-97]
----------------------------------------------------------------------------------------------------
S
G
-
C
Y
Q
Q
M
E
E
A
E
--
M
-
L
N
H
C
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---
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Y
L
M
K
-----
N
LGER
S
--------------
Q
------
V
S
P
-----
R
M
R
E
E
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-
H
-----------
K
---------
Q
L
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M
Q
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--------
N
L
--
D
----------
E
----------
K
-
C
M
C
---
P
A
I
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--
M
M
-
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N
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--
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--
M
WIRMR
D
Q
------
V
---------------
M
S
M
----
A
H
N
L
P
I
E
C
---
N
----
L
M
-----------------------------------------------------------------------------------------------------------------------
18
HHSearch
74.24
15%
-119
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[3-91]
-----------------------------------------------------------------------------------------------------
T
-
C
G
Q
V
S
S
--
S
----
L
A
P
C
I
---
P
Y
V
R
G
-----
G
----
G
-----------------------------
A
------
V
-----------
P
---------
P
A
C
C
N
G
I
R
--------
N
V
--
N
N
L
A
RT
T
P
D
R
Q
A
----------
A
-
C
N
C
-----
L
-
K
--
Q
L
-
S
A
S
--
V
PG
V
-------------
N
---------------
P
N
N
----
A
A
A
L
P
G
K
C
---
G
----
V
S
I
P
YKIS
A
----
S
T
N
C
A
T
-----------
V
------------------------------------------------------------------------------------------
25
HHSearch
72.16
17%
-91
- C3 -
1SM7
-
?
A:
[3-103]
----------------------------------------------------------------------------------------------------
Q
K
-
C
Q
R
E
F
Q
--
Q
E
Q
H
-
L
R
A
C
Q
---
Q
W
I
R
Q
-----
Q
LAG-
S
--------------
P
------
F
S
E
NQW--
G
PQQGPS
L
-----------
R
---------
E
Q
C
C
N
E
L
Y
--------
Q
E
--
D
----------
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----------
V
-
C
V
C
---
P
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L
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--
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A
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A
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--
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--
R
VQGQHGPF-----
Q
---------------
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I
Y
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I
A
K
N
L
P
N
V
C
---
N
----
M
K
Q
I
----
G
----
T
-----------------------------------------------------------------------------------------------------------
35
SP3
69.93
21%
-90
- C4 -
1EC7
2
GUDD_ECOLI
A:
[138-446]
DGQQRS
E
V
E
M
L
G
Y
L
F
FVGNRKATPLPYQSQPDDSC
D
W
Y
R
L
R
HEEAMT
P
D
A
V
V
R
L
A
E
A
A
Y
E
K
YGFN
D
F
K
L
K
G
GVLA
G
E
E
E
A
E
S
I
V
A
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A
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P
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A
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I
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A
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--
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-
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GSL
A
Y
A
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-----
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----
C
--------------
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------
A
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-----
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------
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-----------
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A
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--
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---
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I
A
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D
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R
Q
-
M
G
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--
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--
L
-------------
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QSVD
I
P
L
A
DPHFWT
M
Q
G
----
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V
R
V
A
Q
M
C
H
E
F
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----
L
T
W
G
----
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----
H
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N
N
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F
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A
M
F
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A
A
A
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A
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HWIWQEGNQRLTKEP
F
E
I
K
GG
L
V
Q
V
P
EKPGLG
V
E
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M
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A
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GLGARD
D
A
M
G
M
Q
Y
L
IPG
W
T
F
D
NKRPCMVR
32
SP3
69.12
17%
-111
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
-
C
Y
Q
Q
M
E
E
A
E
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M
-
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---
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M
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PR
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--
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--
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D
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----
V
M
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M
A
-----------
H
N
L
P
----------
I
E
C
N
-------------
L
M
S
Q
P
CQM----------------------------------------------------------------------------------
12
HHSearch
69.02
22%
-125
- C3 -
1N89
1
NLT2G_WHEAT
A:
[7-65]
--------------------------------------------------------------------------------------------------------------------
L
A
V
C
A
---
S
A
I
L
S
-----
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----
A
-----------------------------
K
------
P
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---------
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E
C
C
G
N
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R
--------
A
Q
--
Q
---------------------
G
-
C
F
C
---
Q
Y
A
-
K
D-
P
T
-
Y
G
Q
--
Y
--
I
-------------
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P
H
----
A
R
D
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L
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S
C
---
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----
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A
V
P
---------------------------------------------------------------------------------------------------------------------
22
HHSearch
68.19
17%
-117
- C3 -
2LVF
-
?
A:
[6-101]
----------------------------------------------------------------------------------------------------
E
E
-
C
R
E
Q
M
Q
R
Q
Q
--
M
-
L
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C
R
---
M
Y
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R
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Q
M
E
E
S
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----
Y
--------------
Q
------
T
M
P
RRGME
P
------
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-----------
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---------
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E
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E
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E
--------
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M
--
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----------
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C
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E
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L
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M
M
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Q
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EM
Q
P
R
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M
R
R
M
---------------
M
R
L
----
A
E
N
I
P
S
R
C
---
N
----
L
S
-----------------------------------------------------------------------------------------------------------------------
17
HHSearch
65.33
20%
-77
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[2-89]
-----------------------------------------------------------------------------------------------------
D
-
C
G
H
V
D
S
--
L
--
V
--
R
P
C
L
---
S
Y
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Q
G
-----
G
-------------------
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--------------
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------
P
-----------
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--------
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--
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ARS
Q
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A
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----
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---
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V
N
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P
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----
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I
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S
R
------------------------------------------------------------------------------------------------------
8
Fugue
64.48
18%
-73
- C3 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
---------------------------------------------------------------------------------------GPMRRERGRQ
G
D
S
S
S
-
C
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MGEQEQYDSYDIRS
T
------
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S
-----
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------
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-----------
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C
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NT--------
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-------------
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RLQDRQMV
Q
Q
F
----
K
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----
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M
S
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P
Q
Q
C
---
N
----
F
R
------
A
----
P
Q
R
C
D
L
-----------
D
V
S
G
G
R
CS-----------------------------------------------------------------------------------
24
HHSearch
63.97
20%
-125
- C3 -
2DS2
-
?
B:
[7-69]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
---------
R
Q
C
C
N
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--------
Q
V
--
D
----------
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---
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-
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IIQG
P
Q
Q
L
R
R
L
---------------
F
D
A
----
A
R
N
L
P
N
I
C
---
N
----
I
P
N
I
----
G
----
A
--
C
P
F
------------------------------------------------------------------------------------------------------
30
HHSearch
63.79
20%
-99
- C3 -
1W2Q
-
CONG_ARAHY
A:
[15-112]
-----------------------------------------------------------------------------------------------------
S
-
C
E
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Q
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N
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-----
R
I
MG-
E
QE------------
Q
------
Y
D
S
YD---
I
------
R
-----------
S
TR
S
S
D
Q
Q
--
Q
R
C
C
D
E
L
N
--------
E
M
EN
T
----------
Q
----------
G
-
C
M
C
---
E
A
L
-
Q
--
Q
I
-
M
E
N
--
Q
--
C
-------------
D
RLQDRQMV
Q
Q
F
----
K
R
E
----
L
M
S
L
P
Q
Q
C
---
N
----
F
R
-----------------------------------------------------------------------------------------------------------------------
31
SP3
62.91
15%
-95
* C3 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------------------------------------------
A
I
S
-
C
G
Q
V
A
S
--
A
--
I
--
A
P
C
I
---
S
Y
A
R
G
-----
Q
----
G
--------------
S
------
G
--------------
P
-----------
S
---------
A
G
C
C
S
G
V
R
S
L
N
N
A
ART
T
A
--
D
----------
R
----------
R
-
A
A
C
---
N
C
L
-
K
--
N
A
-
A
A
G
--
V
SG
L
-------------
N
---------------
A
G
N
----
A
A
S
I
P
S
K
C
---
G
VSIP
Y
T
I
S
----
T
----
S
T
D
C
S
R
-----------
V
N
-----------------------------------------------------------------------------------------
2
Fugue
61.96
20%
-78
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------------------------------------------
A
G
-
C
N
A
-----
G
--
Q
-
L
T
V
C
T
---
G
A
I
A
G
-----
G
----------------------------
A
-----
R
------
P
-----------
T
---------
A
A
C
C
S
S
L
R
--------
A
---
Q
----------
Q
----------
G
-
C
F
C
---
Q
F
A
K
D
--
P
R
-
Y
G
R
--
Y
--
V
-------------
N
---------------
S
P
N
----
A
R
K
A
V
S
S
C
---
G
----
I
A
-----------
L
P
T
C
H
-------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
DLRK
G
C
Y
D
LG
I
T
VLMGCP
D
S
I
DKKLPAPPTPS
E
G
C
C
T
L
V
R
T
I
G
M
K
C
V
C
E
I
V
N
K
K
I
E
D
T
I
D
M
Q
K
L
V
N
V
A
A
ACGRPLAPGSQCGSYRVPGA
43
56.84
100%
-4
- C- -
M043
-
A:
[2-116]
D
L
R
K
G
C
Y
D
L
G
I
T
V
L
M
G
C
P
D
S
I
D
K
K
L
P
A
P
P
T
P
S
E
G
C
C
T
L
V
R
T
I
G
M
K
C
V
C
E
I
V
N
K
K
I
E
D
T
I
D
M
Q
K
L
V
N
V
A
A
A
C
G
R
P
L
A
P
G
S
Q
C
G
S
Y
R
V
P
G
A
45
55.77
100%
-24
- C- -
M045
-
A:
[2-127]
D
L
R
K
G
C
Y
D
L
G
I
T
V
L
M
G
C
P
D
S
I
D
K
K
L
P
A
P
P
T
P
S
E
G
C
C
T
L
V
R
T
I
G
M
K
C
V
C
E
I
V
N
K
K
I
E
D
T
I
D
M
Q
K
L
V
N
V
A
A
A
C
G
R
P
L
A
P
G
S
Q
C
G
S
Y
R
V
P
G
A
44
53.37
100%
-15
- C- -
M044
-
A:
[2-116]
D
L
R
K
G
C
Y
D
L
G
I
T
V
L
M
G
C
P
D
S
I
D
K
K
L
P
A
P
P
T
P
S
E
G
C
C
T
L
V
R
T
I
G
M
K
C
V
C
E
I
V
N
K
K
I
E
D
T
I
D
M
Q
K
L
V
N
V
A
A
A
C
G
R
P
L
A
P
G
S
Q
C
G
S
Y
R
V
P
G
A