@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-03 )
ISCGQVNSALAPCIPFLTKGGAPPPACCSGVRGLLGALRTTADRQAACNCLKAAAGSLRGLNQGNAAALPGRCGVSIPYKISTSTNCATIKF
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------......--..--.---10.......----.-------------20.-------------.------------.----------..----------------------..---..30........-----------40.----------.......50.---------..--.-----..-.------.-------60--------..----------......-.--70......-----..80........90.-------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------ISCGQV--NS--A---LAPCIPFLT----K-------------G-G-------------A------------P----------PP----------------------AC---CSGVRGLLGALR-----------TTA----------DRQAACNCLK---------AA--A-----GS-L------R-------G---------LN----------QGNAAA-L--PGRCGVSI-----PYKISTSTNCATIKF-------
13
HHSearch
96.75
65%
-139
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
---------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
--
Q
G
--
N
---
L
A
Q
C
I
G
F
L
Q
----
K
-------------
G
-
G
-------------
V
------------
V
----------
P
P
----------------------
S
C
---
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
----------
D
R
R
A
V
C
S
C
L
K
---------
A
A
--
A
-----
G
A
-
V
------
R
-------
G
---------
I
N
----------
P
N
N
A
E
A
-
L
--
P
G
K
C
G
V
N
I
-----
P
Y
K
I
S
T
S
T
N
C
N
S
I
N
--------
12
HHSearch
93.94
68%
-131
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[2-92]
---------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
G
Q
V
--
S
S
--
S
---
L
A
P
C
I
P
Y
V
R
----
G
-------------
G
-
G
-------------
A
------------
V
----------
P
P
----------------------
A
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
----------
D
R
Q
A
A
C
N
C
L
K
---------
Q
L
--
S
-----
A
S
-
V
------
P
-------
G
---------
V
N
----------
P
N
N
A
A
A
-
L
--
P
G
K
C
G
V
S
I
-----
P
Y
K
I
S
A
S
T
N
C
A
T
V
K
--------
31
SP3
91.94
63%
-125
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
--------------------------------------------------------------------------------------------------------------------------------------------------A
I
S
C
G
Q
V
--
A
S
--
A
---
I
A
P
C
I
S
Y
A
R
----
G
-------------
Q
-
G
-------------
S
G-----------
P
----------
S
A
----------------------
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
----------
D
R
R
A
A
C
N
C
L
K
---------
N
A
--
A
-----
A
G
-
V
------
S
-------
G
---------
L
N
----------
A
G
N
A
A
S
-
I
--
P
S
K
C
G
V
S
I
-----
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
--------
14
HHSearch
90.94
57%
-139
- C2 -
1T12
-
NLTP1_TOBAC
A:
[2-91]
---------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
G
Q
V
--
T
S
--
N
---
L
A
P
C
L
A
Y
L
R
----
N
-------------
T
-
G
--------------------------
P
----------
L
G
----------------------
R
C
---
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
----------
D
R
Q
I
A
C
T
C
L
K
---------
S
A
--
A
-----
G
A
-
I
------
S
-------
G
---------
I
N
----------
L
G
K
A
A
G
-
L
--
P
S
T
C
G
V
N
I
-----
P
Y
K
I
S
P
S
T
D
C
S
K
V
Q
--------
15
HHSearch
88.80
64%
-121
- C2 -
1AFH
-
NLTP_MAIZE
A:
[2-93]
---------------------------------------------------------------------------------------------------------------------------------------------------
I
S
C
G
Q
V
--
A
S
--
A
---
I
A
P
C
I
S
Y
A
R
----
G
-------------
Q
-
G
-------------
S
G-----------
P
----------
S
A
----------------------
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
----------
D
R
R
A
A
C
N
C
L
K
---------
N
A
--
A
-----
A
G
-
V
------
S
-------
G
---------
L
N
----------
A
G
N
A
A
S
-
I
--
P
S
K
C
G
V
S
I
-----
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
--------
16
HHSearch
87.08
42%
-133
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
---------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
--
D
S
--
L
---
V
R
P
C
L
S
Y
V
Q
----
G
-------------
G
-
P
-------------
G
------------
P
----------
S
G
----------------------
Q
C
---
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
----------
D
R
Q
S
A
C
N
C
L
K
---------
G
I
--
A
-----
R
G
-
I
------
H
-------
N
---------
L
N
----------
E
D
N
A
R
S
-
I
--
P
P
K
C
G
V
N
L
-----
P
Y
T
I
S
L
N
I
D
C
S
R
V
---------
28
HHSearch
57.93
23%
-144
* C2 *
1HSS
-
IAA1_WHEAT
A:
[15-106]
------------------------------------------------------------------------------------------------------------------------------------------------------------
P
--
A
---
L
P
A
C
R
P
L
L
R
----
L
Q
C
N
----------
G
-
S
-------------
Q
VP
E
A
--------
V
----------
L
R
----------------------
D
C
---
C
Q
Q
L
A
H
I
-----------------------------
S
E
W
C
R
C
G
A
L
Y
---------
S
M
--
L
-----
D
S
-
M
------
Y
K
E
HGAFP
R
CR
R
E
-----
V
V
----------
K
L
T
A
A
S
-
I
--
T
A
V
C
R
L
P
I
-----
V
V
D
-------------------
25
HHSearch
56.52
22%
-138
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
---
L
P
S
C
R
W
Y
V
T
S
R
TC
G
-------------
I
-
G
-------------
P
R-----------
L
P
W
P
E
L
-----
K
R
----------------------
R
C
---
C
R
E
L
A
D
I
-----------------------------
P
A
Y
C
R
C
T
A
L
S
---------
I
L
--
M
-----
D
G
-
A
------
I
P
P
G
PDAQ
L
E
G
R
------
L
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
-
L
VT
E
A
E
C
N
L
A
T
-----
I
---------------------
36
SP3
54.67
17%
-141
* C3 *
1QPO
-
NADC_MYCTU
A:
[116-284]
---------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
--
A
A
A
G
S
---
V
V
D
A
L
R
A
V
R
----
N
-------------
A
---------------
A
------------
P
----------
D
L
----------------------
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
----------
Q
T
Q
T
A
V
Q
R
R
D
---------
S
R
--
A
-----
P
T
-
V
------
M
L
E
S
S
G
--
G
---------
L
S
----------
L
Q
T
A
A
T
-
Y
---
A
E
T
G
V
D
Y
--------
L
A
V
G
A
L
T
H
S
V
R
V
L
D
I
G
L
D
M
24
HHSearch
54.25
29%
-116
- C2 -
1SM7
-
?
A:
[13-101]
------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
H
---
L
R
A
C
Q
Q
W
I
R
----
Q
QLA----------
G
-
S
P
F
S
E
NQWGPQQGP
S
------------
L
----------
R
E
----------------------
Q
C
---
C
N
E
L
Y
Q
E
-----------------------------
D
Q
V
C
V
C
P
T
L
K
---------
Q
A
--
A
-----
K
S
-
V
------
R
VQ-----
G
Q--------
H
G
PFQST
R
I
---
Y
Q
I
A
K
N
-
L
--
P
N
V
C
N
M
K
Q
-----
I
---------------------
30
HHSearch
51.81
18%
-102
- C2 -
1W2Q
-
CONG_ARAHY
A:
[22-114]
-----------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
--
N
---
L
K
P
C
E
Q
H
I
M
----
Q
R
I
M----------
G
-
E
QEQ----------
Y
DSYDIRSTR
S
S
D
Q
----------
Q
Q
----------------------
R
C
---
C
D
E
L
N
E
M
E
----------------
N
-----------
T
Q
G
C
M
C
E
A
L
Q
---------
Q
I
--
M
-----
E
N
-
Q
------
C
DRLQ---
D
---------
R
Q
MV
Q
Q
F
-----
K
R
E
L
M
S
-
L
--
P
Q
Q
C
N
F
R
A
-----
P
---------------------
9
Fugue
51.32
24%
-86
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
--
M
E
--
E
A
EM
L
N
H
C
G
M
Y
L
M
----
K
NLGERSQVSPR
M
R
E
-
E
-------------
D
------------
H
----------
K
Q
----------------------
L
C
---
C
M
Q
L
K
N
L
-----------------------------
D
E
K
C
M
C
P
A
I
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---------
M
M
--
L
N
EPMW
I
R
-
M
------
R
-------
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---------
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----------
M
S
M
A
H
N
-
L
--
P
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E
C
N
L
M
------------
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Q
P
C
Q
M
----------
17
HHSearch
49.80
29%
-98
- C2 -
2RKN
2
DIRL1_ARATH
A:
[4-75]
----------------------------------------------------------------------------------------------------------------------------------------------------
L
C
G
M
S
--
Q
D
--
E
---
L
N
E
C
K
P
A
V
S
----
K
-------------
E
-
N
PT-----------
S
------------
P
----------
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----------------------
P
C
---
C
T
A
L
Q
H
A
-----------------------------
D
F
A
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N
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-
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--------------
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----------
P
E
L
A
S
A
-
L
--
P
K
Q
C
G
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A
N
-----
A
P
--------------------
22
HHSearch
48.13
14%
-128
- C2 -
1B1U
-
IAAT_ELECO
A:
[15-109]
------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
---
L
D
S
C
R
W
Y
V
S
----
T
R
T
CG---------
V
-
G
-------------
P
RLA
T
Q
E
------
M
----------
K
A
----------------------
R
C
---
C
R
Q
L
E
A
I
-----------------------------
P
A
Y
C
R
C
E
A
V
R
---------
I
L
--
M
-----
D
G
-
V
------
V
T
PS----
G
Q
H
E
G
RLLQD
L
P
GCP
R
Q
V
Q
R
A
-
F
A
P
K
L
V
-
T
--
E
V
E
C
N
L
A
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-----
I
H
--------------------
29
HHSearch
46.81
25%
-98
- C2 -
2LVF
-
?
A:
[16-101]
------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
M
---
L
S
H
C
R
M
Y
M
R
----
Q
Q
M
E
----------
E
S
T
-------------
Y
------------
Q
TMPRRGMEP
H
M
S
----------------------
E
C
---
C
E
Q
L
E
G
M
-----------------------------
D
E
S
C
R
C
E
G
L
R
---------
M
M
--
M
-----
R
M
M
Q
Q
K
EM
Q
P
R
-------
G
E
Q
M
R
-----
R
M
----------
M
R
L
A
E
N
-
I
--
P
S
R
C
N
L
S
----------------------------
5
Fugue
46.60
18%
-108
- C2 -
2D5R
-
TOB1_HUMAN
B:
[24-139]
---------------------------------------------------------------------------------------------------------------------------------------------------
H
M
Q
L
E
I
--
Q
V
--
A
---
L
N
F
I
I
S
Y
L
Y
--------------------
N
-------------
K
------------
L
----------
P
R
----------------------
R
R
---
V
N
I
F
G
E
E
L
E
R
L
L
-----------
K
K
K
Y
EGHWYPEKP
Y
K
G
S
G
F
R
C
I
H
I
G
EKVD
P
V
I
E
Q
--
A
-----
S
K
-
E
------
S
-------
G
---------
L
D
----------
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G
N
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--
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----
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F
E
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Y
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I
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E
K
G
P
V
K
VLYVD--
2
Fugue
46.21
27%
-84
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-------------------------------------------------------------------------------------------------------------------------------------------------AI
D
L
C
G
M
S
--
Q
D
--
E
---
L
N
E
C
K
P
A
V
S
----
K
-------------
E
-
N
-------------
P
------------
T
----------
S
P
S
Q
--------------------
P
C
---
C
T
A
L
Q
-------------------
H
A
----------
D
F
A
C
L
C
G
Y
K
N
---------
S
P
--
W
-----
L
G
-
S
------
F
-------
G
---------
V
D
----------
P
E
L
A
S
A
-
L
--
P
K
Q
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G
L
A
N
-----
A
------
P
T
C
------------
7
Fugue
45.46
19%
-62
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
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S
S
Q
Q
C
R
Q
E
VQ
R
K
--
D
---
L
S
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R
Y
L
R
----
Q
-------------
S
-
S
-------------
S
------------
R
----------
R
S
T
GEEVLRMPGDENQQQESQQL
Q
Q
C
---
C
N
Q
V
K
Q
V
R
D
E
C
Q
-----------
C
E
A
----------
I
K
Y
I
A
E
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Q
I
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---------
Q
G
QL
H
-----
G
E
-
E
------
S
-------
E
---------
R
V
----------
A
Q
R
A
G
E
-
I
--
V
S
S
C
G
V
R
C
-----
M
R
Q
T
R
T
N
---------------
3
Fugue
44.27
30%
-83
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
--
N
--
A
G
--
Q
---
L
T
V
C
T
G
A
I
A
----
G
-------------
G
-
A
-------------
R
------------
P
----------
T
A
----------------------
A
C
---
C
S
S
L
R
--------------------------------
A
Q
Q
G
C
F
C
Q
F
---------
A
K
--
D
-----
P
R
-
Y
------
G
-------
R
Y--------
V
N
----------
S
P
N
A
R
K
-
A
--
V
S
S
C
G
I
A
L
-----
P
-------
T
C
H
-----------
38
SP3
42.74
8%
-118
- C3 -
1O4U
-
?
A:
[1-273]
M
E
K
I
L
D
L
L
M
S
F
V
K
E
D
E
GKLDLASFPLRN
T
T
A
G
A
H
L
L
L
KT
E
N
V
V
A
S
G
I
E
V
S
R
M
F
L
E
K
M
G
L
L
S
K
F
NVEDG
E
Y
L
E
G
TGVI
G
E
I
E
G
N
T
Y
K
L
L
V
A
E
R
T
L
L
N
V
L
S
V
M
F
S
V
A
T
T
T
R
R
F
A
E
K
L
KH
A
K
I
A
A
T
RKILPGL
G
V
L
Q
K
I
A
V
V
H
G
GGDC
V
M
I
K
D
N
H
L
--
K
M
Y
G
S
---
A
E
R
A
V
Q
E
V
R
----
K
-------------
I
-
I
-------------
P
------------
F
----------
T
T
----------------------
K
I
E
V
E
V
E
N
L
E
D
A
L
R
A
V
E
A
GAD
I
V
M
L
D
NL
S
P
E
----------
E
V
K
D
I
S
R
R
I
K
---------
D
I
--
N
-----
P
N
-
V
------
I
V
E
V
S
G
--
G
---------
I
T
----------
E
E
N
V
S
L
-
Y
---
D
F
E
T
V
D
V
I
S
S
SR
L
T
L
Q
E
V
F
V
D
-
L
S
L
E
I
Q
R-----
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ISCGQVNSALAPCIPFLTKGGAPPPACCSGVRGLLGALRTTADRQAACNCLKAAAGSLRGLNQGNAAALPGRCGVSIPYKISTSTNCATIKF
44
98.39
100%
-143
- C- -
M044
-
A:
[1-110]
I
S
C
G
Q
V
N
S
A
L
A
P
C
I
P
F
L
T
K
G
G
A
P
P
P
A
C
C
S
G
V
R
G
L
L
G
A
L
R
T
T
A
D
R
Q
A
A
C
N
C
L
K
A
A
A
G
S
L
R
G
L
N
Q
G
N
A
A
A
L
P
G
R
C
G
V
S
I
P
Y
K
I
S
T
S
T
N
C
A
T
I
K
F
46
97.66
100%
-140
- C- -
M046
-
A:
[1-94]
I
S
C
G
Q
V
N
S
A
L
A
P
C
I
P
F
L
T
K
G
G
A
P
P
P
A
C
C
S
G
V
R
G
L
L
G
A
L
R
T
T
A
D
R
Q
A
A
C
N
C
L
K
A
A
A
G
S
L
R
G
L
N
Q
G
N
A
A
A
L
P
G
R
C
G
V
S
I
P
Y
K
I
S
T
S
T
N
C
A
T
I
K
F
45
94.20
100%
-133
- C- -
M045
-
A:
[1-94]
I
S
C
G
Q
V
N
S
A
L
A
P
C
I
P
F
L
T
K
G
G
A
P
P
P
A
C
C
S
G
V
R
G
L
L
G
A
L
R
T
T
A
D
R
Q
A
A
C
N
C
L
K
A
A
A
G
S
L
R
G
L
N
Q
G
N
A
A
A
L
P
G
R
C
G
V
S
I
P
Y
K
I
S
T
S
T
N
C
A
T
I
K
F
48
92.92
100%
-136
- C- -
M048
-
A:
[1-94]
I
S
C
G
Q
V
N
S
A
L
A
P
C
I
P
F
L
T
K
G
G
A
P
P
P
A
C
C
S
G
V
R
G
L
L
G
A
L
R
T
T
A
D
R
Q
A
A
C
N
C
L
K
A
A
A
G
S
L
R
G
L
N
Q
G
N
A
A
A
L
P
G
R
C
G
V
S
I
P
Y
K
I
S
T
S
T
N
C
A
T
I
K
F