@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 202_tI_BETVU: (2014-05-03 )
DQATETAPSCSTVISNVAACLPFISHTSPSPSGICCGGVKNVAGLAKTHDDKMAICNCLKTELANIKYDPALVAALPKQCSVNINLPPISKNTDCSKVVFGNPMKY
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------.........10.-.......20....----.----.---..------------30----.----....---....40........50-----------....---....--60.-....--------.----.-------.--------------------70.....--...80......-..90......-----...100-....--------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------DQATETAP
S
C
S
T
-
V
I
S
N
V
A
A
C
L
P
F
I
S----H----T---SP------------S-----P----S
G
I
C
---CG
G
V
K
N
V
A
G
LAKTHD
D
-----------
K
M
A
I
---
C
N
C
L
--
K
T
E
-
L
ANI--------K----Y-------
D
--------------------
P
A
L
V
A
AL--PKQ
C
S
V
NINLP-PIS-KNTDCS-----
K
V
VFGN-PMKY--------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
95.45
44%
-135
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
-----------------------------------------------------------------------------------------------------------------------------
A
I
T
C
G
Q
-
V
T
S
N
L
A
P
C
L
A
Y
L
R
----
N
----
T
---
G
-------------------
P
----
L
G
R
C
---
C
G
G
V
K
A
L
V
N
S
A
R
T
T
E
D
-----------
R
Q
I
A
---
C
T
C
L
--
K
S
A
-
A
G
A
I
S-------
G
----
I
-------
N
--------------------
L
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
Y
--
K
I
S
-
P
S
T
D
C
S
-----
K
V
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
87.27
39%
-119
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
-
V
D
S
L
V
R
P
C
L
S
Y
V
Q
----
G
----
G
----
P
------------
G
-----
P
----
S
G
Q
C
---
C
D
G
V
K
N
L
H
N
Q
A
R
S
Q
S
D
-----------
R
Q
S
A
---
C
N
C
L
--
K
G
I
-
A
R
G
I
H-------
N
----
L
-------
N
--------------------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
--
T
I
S
-
L
N
I
D
C
S
-----
R
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
87.09
40%
-125
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
-
V
D
S
L
V
R
P
C
L
S
Y
V
Q
----
G
----
G
---
P
-------------
G
-----
P
----
S
G
Q
C
---
C
D
G
V
K
N
L
H
N
Q
A
R
S
Q
S
D
-----------
R
Q
S
A
---
C
N
C
L
--
K
G
I
-
A
R
G
I
--------
H
----
N
LN--------------------------
E
D
N
A
R
S
I
--
P
P
K
C
G
--
V
N
L
P
Y
T
I
S
-
L
N
I
D
C
S
-----
R
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
86.19
38%
-118
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
-----------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
-
V
A
S
A
I
A
P
C
I
S
Y
A
R
----
G
----
Q
---
G
S
------------
G
-----
P
----
S
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
T
T
A
D
-----------
R
R
A
A
---
C
N
C
L
--
K
N
A
-
A
A
G
V
S-------
G
----
L
-------
N
--------------------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
--
T
I
S
-
T
S
T
D
C
S
-----
R
V
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
85.94
34%
-125
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
-
V
Q
G
N
L
A
Q
C
I
G
F
L
Q
----
K
----
G
----
G
------------
V
-----
V
----
P
P
S
C
---
C
T
G
V
K
N
I
L
N
S
S
R
T
T
A
D
-----------
R
R
A
V
---
C
S
C
L
--
K
A
A
-
A
G
A
V
R-------
G
----
I
-------
N
--------------------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
--
K
I
S
-
T
S
T
N
C
N
-----
S
I
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
85.03
38%
-127
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
-----------------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
Q
-
V
S
S
S
L
A
P
C
I
P
Y
V
R
----
G
----
G
----
G
------------
A
-----
V
----
P
P
A
C
---
C
N
G
I
R
N
V
N
N
L
A
R
T
T
P
D
-----------
R
Q
A
A
---
C
N
C
L
--
K
Q
L
-
S
A
S
V
P-------
G
----
V
-------
N
--------------------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
--
K
I
S
-
A
S
T
N
C
A
-----
T
V
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
SP3
82.62
33%
-113
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-----------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
-
V
A
S
A
I
A
P
C
I
S
Y
A
R
----
G
----
Q
---
G
S
------------
G
-----
P
----
S
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
T
T
A
D
-----------
R
R
A
A
---
C
N
C
L
--
K
N
A
-
A
A
G
V
S-------
G
----
L
-------
N
--------------------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
--
T
I
S
-
T
S
T
D
C
S
-----
R
V
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
58.17
31%
-125
- C2 -
2RKN
2
DIRL1_ARATH
A:
[2-75]
-----------------------------------------------------------------------------------------------------------------------------
I
D
L
C
G
M
-
S
Q
D
E
L
N
E
C
K
P
A
V
S
----
K
----
E
---
N
P
T-----------
S
-----
P
----
S
Q
P
C
---
C
T
A
L
Q
H
A
--------
D
-----------
F
A
C
L
---
C
G
Y
K
--
N
S
P
W
L
G
S
F
--------
G
----
V
-------
D
--------------------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
53.94
29%
-98
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------------------------------------------------------------------------------
A
I
D
L
C
G
M
-
S
Q
D
E
L
N
E
C
K
P
A
V
S
----
K
----
E
---
N
P
T-----------
S
-----
P
----
S
Q
P
C
---
C
T
A
L
Q
H
A
--------
D
-----------
F
A
C
L
---
C
G
Y
K
--
N
S
P
-
W
L
G
S
--------
F
G---
V
-------
D
--------------------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
---------
N
A
P
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
Fugue
53.65
22%
-49
- C2 -
3B4Q
-
?
A:
[4-93]
--------------------------------------------------------------------------------------------------------------------------
L
N
S
A
P
T
P
R
D
-
V
V
A
N
----------------------
A
P
------------
A
-----
P
----
V
Q
A
A
---
V
A
G
A
Q
E
Y
A
A
Q
A
G
L
N
T
E
-----------
E
L
A
V
D
A
L
Y
N
A
I
--
K
V
R
-
L
A
G
---------
G
----
I
-------
P
--------------------
P
Q
I
E
A
F
Y
--
Q
A
N
---
R
T
N
F
N
-
G
F
Y
M
A
N
R
G
A
I
-----
D
F
I
F
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
52.91
24%
-131
- C2 -
1SM7
-
?
A:
[13-100]
--------------------------------------------------------------------------------------------------------------------------------------
Q
H
L
R
A
C
Q
Q
W
I
R
----
Q
----
Q
LAG
S
P
F
S
E
NQWGPQQGP
S
-----
L
----
R
E
Q
C
---
C
N
E
L
Y
Q
E
--------
D
-----------
Q
V
C
V
---
C
P
T
L
--
K
Q
A
-
A
K
S
V
RVQ-----
G
Q---
H
GPFQST
R
I
--------------------
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
52.21
17%
-149
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-110]
--------------------------------------------------------------------------------------------------------------------------------------
N
P
L
P
S
C
R
W
Y
V
T
S
R
TC
G
----
I
---
G
P
------------
R
L----
P
W
P
E
L
K
R
R
C
---
C
R
E
L
A
D
I
--------
P
-----------
A
Y
C
R
---
C
T
A
L
--
S
I
L
-
M
D
G
A
I
P
P
G
PDAQ
L
E
G
R
-
L
E
------
D
LPGCP
R
E
V
Q
-----------
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
Fugue
46.80
16%
-39
- C2 -
4CI0
1
?
A:
[2-386]
S
E
R
I
V
I
S
PTSRQE
G
H
A
E
L
V
M
E
V
D
DEGIVT
K
G
R
Y
F
S
ITPVRG
L
E
K
M
V
TGKAPET
A
P
V
M
V
Q
R
ICGVC
P
I
P
H
T
L
A
S
V
E
A
I
D
D
S
L
DIEVP
K
A
G
R
L
L
R
E
L
T
L
A
A
H
H
V
N
S
H
A
I
H
H
F
L
I
APDFVPE
N
L
M
A
D
A
I
N
S
V
S
E
-
I
R
K
N
A
Q
Y
V
V
D
M
V
A
----
G
----
E
---
G
I
------------
H
-----
P
----
S
D
V
R
---
I
G
G
M
A
D
----
N
I
T
E
L
A
-----------
R
K
R
L
---
Y
A
R
L
--
K
Q
L
-
K
P
K
V
--------
N
----
E
-------
H
--------------------
V
E
L
M
I
G
L
--
I
E
D
K
G
L
P
E
G
L
G
-
V
H
N
-
Q
P
T
L
A
S
-----
H
Q
I
Y
G
D
-
R
T
K
F
DLDR
F
T
E
I
M
PESWYDD
P
E
I
A
K
R
AC
S
T
I
P
L
Y
DG
R
N
V
E
V
G
P
R
A
R
M
V
E
FQGFKERG
V
V
A
Q
H
V
A
R
A
L
E
M
K
T
A
L
S
R
A
I
E
I
L
D
E
LDTSAPV
R
A
D
F
D
ERGTG
K
L
G
I
G
A
I
E
A
PR
G
L
D
V
H
M
A
K
V
E
NGKIQ
F
Y
S
A
L
V
P
T
T
W
N
I
P
T
M
G
P
A
T
EGFHHEY
G
P
H
V
I
R
A
Y
DPCLSCATH
32
HHSearch
41.63
13%
-139
- C2 -
1B1U
-
IAAT_ELECO
A:
[15-109]
--------------------------------------------------------------------------------------------------------------------------------------
N
P
L
D
S
C
R
W
Y
V
S
----
T
R
T
CG
V
---
G
P
------------
R
LA
T
Q
E
M
----
K
A
R
C
---
C
R
Q
L
E
A
I
--------
P
-----------
A
Y
C
R
---
C
E
A
V
--
R
I
L
-
M
D
G
V
V
-------
T
----
P
S------
G
Q
H
E
G
RLLQDLPGCP
R
Q
V
Q
R
A
F
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
41.19
16%
-45
- C1 -
2EEB
-
A:
[1-106]
-----------------------------------------------------------------------------------------------------------------------
G
S
S
G
S
S
G
S
D
D
A
R
-
R
L
T
V
M
S
L
Q
E
S
G
L
K
----
V
----
N
---
Q
P
------------
A
-----
S
----
F
A
I
R
---
L
N
G
A
K
G
-
K
I
D
A
K
V
H
S
P
-----------
S
G
A
V
---
E
E
C
H
--
V
S
E
-
L
E
P
D
--------
K
----
Y
-------
A
--------------------
V
R
F
I
P
H
E
--
N
G
V
H
T
I
D
V
K
F
N
-
G
S
H
-
V
V
G
S
P
F
-----
K
V
R
V
G
E
-
P
G
Q
A
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
SP3
41.00
6%
-111
- C2 -
1QPO
-
NADC_MYCTU
A:
[116-284]
--------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
A
G
---------
S
V
V
D
A
L
R
A
V
R
-------------
N
A
------------
A
-----
P
----
D
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
E
K
P
E
L
I
L
LDNFA
V
W
Q
T
Q
T
A
---
V
Q
R
R
--
D
S
R
-
A
P
T
V
M
L
E
S
S
G
--
G
----
L
-------
S
--------------------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
-----
L
A
-
V
G
A
L
T
H
-----
S
V
R
V
L
D
I
G
L
D
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
39.66
19%
-87
- C2 -
3OB4
-
?
A:
[429-485]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
C
---
C
N
E
L
N
E
F
------
E
N
N
-----------
Q
R
C
M
---
C
E
A
L
--
Q
Q
I
-
M
E
N
Q
S
-------
D
RLQG
R
-------
Q
Q
E
Q
Q
F
---------------
K
R
E
L
R
N
L
--
P
Q
Q
C
G
L
R
A
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
39.48
14%
-56
- C2 -
1HZI
-
IL4_HUMAN
A:
[1-129]
---------------------------------------------------------------------------------------------------------HKCDI
T
L
Q
A
I
I
K
T
L
N
S
L
T
E
Q
K
T
L
C
T
E
L
T
V
T
D
I
F
A
-----
A
----
S
----
K
---
N
T
------------
T
-----
E
----
K
E
T
F
---
C
R
A
A
T
V
L
R
Q
F
Y
S
H
H
E
K
-----------
D
T
R
------
C
L
--
G
A
T
-
A
Q
Q
F
--------
H
----
R
-------
H
--------------------
K
Q
L
I
R
F
L
--
K
R
---
L
D
R
N
L
W
-
G
L
A
-
G
L
N
S
C
P
V
KEAN
Q
S
T
L
E
N
-
F
L
E
R
L
K
T
I
M
R
E
K
Y
S
K
C
S
S------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
37.71
16%
-78
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[6-66]
--------------------------------------------------------------------------------------------------------------------------------------
G
Q
L
T
V
C
T
G
A
I
A
----
G
----
G
---
A
-------------
R
-----
P
----
T
A
A
C
---
C
S
S
L
R
A
----------------------
Q
Q
G
---
C
F
C
Q
F
A
K
D
P
R
Y
G
R
---------
Y
----
V
-------
N
--------------------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
36.72
24%
-77
- C2 -
1N89
1
NLT2G_WHEAT
A:
[5-65]
--------------------------------------------------------------------------------------------------------------------------------------
S
Q
L
A
V
C
A
S
A
I
L
----
S
----
G
---
A
-------------
K
-----
P
----
S
G
E
C
---
C
G
N
L
R
A
----------------------
Q
Q
G
---
C
F
C
Q
YA
K
D
P
T
Y
G
Q
---------
Y
----
I
-------
R
--------------------
S
P
H
A
R
D
T
--
L
T
S
C
G
L
A
V
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90........100....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
DQATETAP
S
C
S
T
V
I
S
N
V
A
A
C
L
P
F
I
SHTSPSPS
G
I
C
CG
G
V
K
N
V
A
G
LAKTHD
D
K
M
A
I
C
N
C
L
K
T
E
L
ANIKY
D
P
A
L
V
A
ALPKQ
C
S
V
NINLPPISKNTDCS
K
V
VFGNPMKY
41
39.83
100%
-10
- C- -
M041
-
A:
[7-103]
D
Q
A
T
E
T
A
P
S
C
S
T
V
I
S
N
V
A
A
C
L
P
F
I
S
H
T
S
P
S
P
S
G
I
C
C
G
G
V
K
N
V
A
G
L
A
K
T
H
D
D
K
M
A
I
C
N
C
L
K
T
E
L
A
N
I
K
Y
D
P
A
L
V
A
A
L
P
K
Q
C
S
V
N
I
N
L
P
P
I
S
K
N
T
D
C
S
K
V
V
-------
43
39.15
100%
5
- C- -
M043
-
A:
[7-103]
D
Q
A
T
E
T
A
P
S
C
S
T
V
I
S
N
V
A
A
C
L
P
F
I
S
H
T
S
P
S
P
S
G
I
C
C
G
G
V
K
N
V
A
G
L
A
K
T
H
D
D
K
M
A
I
C
N
C
L
K
T
E
L
A
N
I
K
Y
D
P
A
L
V
A
A
L
P
K
Q
C
S
V
N
I
N
L
P
P
I
S
K
N
T
D
C
S
K
V
V
-------
39
35.13
100%
7
- C- -
M039
-
A:
[7-171]
D
Q
A
T
E
T
A
P
S
C
S
T
V
I
S
N
V
A
A
C
L
P
F
I
S
H
T
S
P
S
P
S
G
I
C
C
G
G
V
K
N
V
A
G
L
A
K
T
H
D
D
K
M
A
I
C
N
C
L
K
T
E
L
A
N
I
K
Y
D
P
A
L
V
A
A
L
P
K
Q
C
S
V
N
I
N
L
P
P
I
S
K
N
T
D
C
S
K
V
V
-------
37
34.80
100%
-1
- C- -
M037
-
A:
[7-103]
D
Q
A
T
E
T
A
P
S
C
S
T
V
I
S
N
V
A
A
C
L
P
F
I
S
H
T
S
P
S
P
S
G
I
C
C
G
G
V
K
N
V
A
G
L
A
K
T
H
D
D
K
M
A
I
C
N
C
L
K
T
E
L
A
N
I
K
Y
D
P
A
L
V
A
A
L
P
K
Q
C
S
V
N
I
N
L
P
P
I
S
K
N
T
D
C
S
K
V
V
-------