@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-03 )
HITCGIVTSTLAQCMGYLTNFFPVPSDYCCAEVKGLNQMAQTTPDRRQVCKCLKAVAKENKGFISIELVGTLPTICGVSVPYPFNFSTNCDTISIAV
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------...-.....--.10-.........20---.----.-----------------.-------------------.-----.-----.---------------------...---30........40-----------........50.--....-...60---.---.--------.------.---------.---------....70.--.......80----.........90......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------HIT-CGIVT--ST--LAQCMGYLTN----F----F-----------------P-------------------V-----P-----S---------------------DYC---CAEVKGLNQMAQ-----------TTPDRRQVCKC--LKAV-AKEN----K---G--------F------I---------S---------IELVGTL--PTICGVSV-----PYPFNFSTNCDTISIAV
20
HHSearch
93.23
40%
-129
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
-
C
G
Q
V
A
--
S
A
--
I
A
P
C
I
S
Y
A
R
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----
Q
----
G
-----------------
S
-------------------
G
-----
P
-----
S
---------------------
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
--
L
K
N
A
-
A
A
G
V
----
S
---
G
---------------
L
---------
N
---------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
-----
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
---
21
HHSearch
92.70
45%
-147
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
-
C
G
Q
V
T
--
S
N
--
L
A
P
C
L
A
Y
L
R
N
----
T
----
G
-------------------------------------------
P
-----
L
---------------------
G
R
C
---
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
--
L
K
S
A
-
A
G
A
I
----
S
---
G
---------------
I
---------
N
---------
L
G
K
A
A
G
L
--
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S
T
C
G
V
N
I
-----
P
Y
K
I
S
P
S
T
D
C
S
K
V
Q
---
25
HHSearch
90.51
45%
-142
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
-
C
G
Q
V
Q
--
G
N
--
L
A
Q
C
I
G
F
L
Q
K
----
G
----
G
-------------------------------------
V
-----
V
-----
P
---------------------
P
S
C
---
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
--
L
K
A
A
-
A
G
A
V
----
R
---
G
---------------
I
---------
N
---------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
-----
P
Y
K
I
S
T
S
T
N
C
N
S
I
N
---
23
HHSearch
90.25
40%
-136
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
-
C
G
Q
V
S
--
S
S
--
L
A
P
C
I
P
Y
V
R
G
----
G
----
G
-------------------------------------
A
-----
V
-----
P
---------------------
P
A
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
--
L
K
Q
L
-
S
A
S
V
----
P
---
G
---------------
V
---------
N
---------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
-----
P
Y
K
I
S
A
S
T
N
C
A
T
V
K
---
10
SP3
89.72
38%
-136
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
-
C
G
Q
V
A
--
S
A
--
I
A
P
C
I
S
Y
A
R
G
----
Q
----
G
-----------------
S
-------------------
G
-----
P
-----
S
---------------------
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
--
L
K
N
A
-
A
A
G
V
----
S
---
G
---------------
L
---------
N
---------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
-----
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
---
24
HHSearch
85.74
33%
-140
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
-
C
G
H
V
D
--
S
L
--
V
R
P
C
L
S
Y
V
Q
G
----
G
----------------------
P
-------------------
G
-----
P
-----
S
---------------------
G
Q
C
---
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
--
L
K
G
I
-
A
R
G
I
----
H
---
N
---------------
L
---------
N
---------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
-----
P
Y
T
I
S
L
N
I
D
C
S
R
V
----
34
HHSearch
63.59
26%
-116
- C2 -
1SM7
-
?
A:
[13-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
H
--
L
R
A
C
Q
Q
W
I
R
Q
----
Q
----
L
AG
S
--------------
P
F
S
E
NQWGPQQGP-------
S
-----
L
-----
R
---------------------
E
Q
C
---
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
--
L
K
Q
A
-
A
K
S
V
----
R
VQ-
G
--------
Q
------
H
GPFQST
R
--
I
---------
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
-----
I
----------------
26
HHSearch
62.92
25%
-124
- C2 -
2RKN
2
DIRL1_ARATH
A:
[2-75]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
L
-
C
G
M
S
Q
--
D
E
--
L
N
E
C
K
P
A
V
S
K
----
E
----
N
-----------------
P
T------------------
S
-----
P
-----
S
---------------------
Q
P
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
--
K
N
S
P
W
L
G
S
F
--------
G
---------------
V
---------
D
---------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
-----
A
P
---------------
32
HHSearch
62.91
20%
-176
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
--
L
P
S
C
R
W
Y
V
T
S
R
TCG
I
----
G
-----------------
P
-------------------
R
-----
L
P
W
P
E
L
K
---------------------
R
R
C
---
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
--
L
S
I
L
-
M
D
G
A
----
I
P
P
G
P
--------
D
AQL
E
G
R
L
E
--------
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
-----
I
----------------
2
Fugue
59.99
25%
-88
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
D
L
-
C
G
M
S
Q
--
D
E
--
L
N
E
C
K
P
A
V
S
K
----
E
----
N
-----------------
P
-------------------
T
S----
P
-----
S
---------------------
Q
P
C
---
C
T
A
L
Q
-------------------
H
A
D
F
A
C
L
C
G
Y
--
K
N
S
P
-
W
L
G
S
----
F
---
G
---------------
V
---------
D
---------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
-----
A
------
P
T
C
-------
31
HHSearch
58.80
24%
-79
- C2 -
1PSY
-
2SS_RICCO
A:
[25-122]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
--
L
S
S
C
E
R
Y
L
R
Q
----
S
S
S
--
R
-----------------
R
S
T
GEEVLRMPGDENQQQES
Q
-----
Q
-----
L
---------------------
Q
Q
C
---
C
N
Q
V
K
Q
-----------------
V
--
R
D
E
C
Q
C
E
A
--
I
K
Y
I
-
A
E
D
Q
----
I
Q
Q
-
G
--------
Q
------
L
HGEE
S
E
R
--
V
---------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
-------
R
C
M
R
Q
T
-----------
19
SP3
53.05
18%
-77
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
---------------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
-
C
R
Q
E
V
QR
K
D
--
L
S
S
C
E
R
Y
L
R
Q
----
S
----
S
-----------------
S
-------------------
R
-----
R
-----
S
T
GEEVLRMPGDENQQQESQQL
Q
Q
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
--
I
K
Y
I
-
A
E
D
Q
I
Q
--
Q
---
G
--------
Q
------
L
---------
H
GEE
S
E
R
V
--
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
R
C
-----
M
R
Q
T
R
T
N
----------
28
HHSearch
49.20
29%
-78
- C2 -
1N89
1
NLT2G_WHEAT
A:
[4-65]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
S
Q
--
L
A
V
C
A
S
A
I
L
S
----
G
----
A
-------------------------------------
K
-----
P
-----
S
---------------------
G
E
C
---
C
G
N
L
R
A
----------------------
Q
Q
G
C
F
C
--
Q
Y
A
K
-
D
P
T
Y
----
G
---
Q
--------
Y
------
I
---------
R
---------
S
P
H
A
R
D
T
--
L
T
S
C
G
L
A
V
-----
P
----------------
30
HHSearch
48.70
14%
-135
- C2 -
1B1U
-
IAAT_ELECO
A:
[15-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
--
L
D
S
C
R
W
Y
V
S
T
----
R
T
CGV
G
-----------------
P
-------------------
R
LA
T
Q
E
M
-----
K
---------------------
A
R
C
---
C
R
Q
L
E
A
I
-------------------
P
A
Y
C
R
C
E
A
--
V
R
I
L
-
M
D
G
V
----
V
T
PS
G
Q
H
E
G
RLLQ
D
------
L
PGCP
R
Q
V
Q
R
A
---------
F
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
-----
I
H
---------------
35
HHSearch
48.50
22%
-92
- C2 -
3OB4
-
?
A:
[428-485]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
---------------------
E
R
C
---
C
N
E
L
N
E
F
E
-----------------
N
N
Q
R
C
M
C
E
A
--
L
Q
Q
I
-
M
E
N
Q
----
S
---
D
--------
R
LQG---
R
---------
Q
Q
E
Q
Q
F
----
K
R
E
L
R
N
L
--
P
Q
Q
C
G
L
R
A
-----
P
----------------
14
SP3
46.01
14%
-101
- C2 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
A
G
S
V
V
--
D
A
--
L
R
A
V
R
N
A
--------------------------------------------------
A
-----
P
-----
D
---------------------
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
--
R
D
S
R
-
A
P
T
V
M
L
E
S
S
---
G
--------
G
------
L
---------
S
---------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
L
A
V
GA
L
T
H
S
V
R
V
L
D
---
I
G
L
D
M
8
Fugue
45.29
21%
-78
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
-
C
--
N
A
--
G
Q
--
L
T
V
C
T
G
A
I
A
G
----
G
----
A
-----------------
R
-------------------------
P
-----
T
---------------------
A
A
C
---
C
S
S
L
R
----------------------
A
Q
Q
G
C
F
C
--
Q
F
A
K
-
D
P
R
Y
----
G
---
R
--------
Y
------
V
---------
N
---------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
-----
P
-------
T
C
H
------
12
SP3
44.27
14%
-101
- C2 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
A
G
S
V
V
--
D
A
--
L
R
A
V
R
N
A
--------------------------------------------------
A
-----
P
-----
D
---------------------
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
--
R
D
S
R
-
A
P
T
V
M
L
E
S
S
---
G
--------
G
------
L
---------
S
---------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
L
A
V
GA
L
T
H
S
V
R
V
L
D
---
I
G
L
D
M
6
Fugue
44.00
12%
-83
- C2 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------GPMRRERGRQGD
S
S
S
-
C
E
R
Q
V
--
D
R
VN
L
K
P
C
E
Q
H
I
M
Q
----
R
----
I
MGEQEQYDSYDIRSTR
S
S
-------------------
D
-----
Q
-----
Q
---------------------
Q
R
C
---
C
D
E
L
N
E
M
E
N
T
Q
G
-----------
C
M
C
E
A
L
Q
Q
I
M
E
N
Q
C
D
R
L
-
Q
D
R
Q
----
M
---
V
--------
Q
------
Q
---------
F
---------
K
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
-----
P
Q
R
C
D
L
D
V
S
G
G
R
C
S
---
27
HHSearch
43.64
21%
-81
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[6-66]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Q
--
L
T
V
C
T
G
A
I
A
G
----
G
----
A
-------------------------------------
R
-----
P
-----
T
---------------------
A
A
C
---
C
S
S
L
R
A
----------------------
Q
Q
G
C
F
C
--
Q
F
A
K
-
D
P
R
Y
----
G
---
R
--------
Y
------
V
---------
N
---------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
-----
P
----------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
HITCGIVTSTLAQCMGYLTNFFPVPSDYCCAEVKGLNQMAQTTPDRRQVCKCLKAVAKENKGFISIELVGTLPTICGVSVPYPFNFSTNCDTISIAV
42
95.96
100%
-165
- C- -
M042
-
A:
[1-127]
H
I
T
C
G
I
V
T
S
T
L
A
Q
C
M
G
Y
L
T
N
F
F
P
V
P
S
D
Y
C
C
A
E
V
K
G
L
N
Q
M
A
Q
T
T
P
D
R
R
Q
V
C
K
C
L
K
A
V
A
K
E
N
K
G
F
I
S
I
E
L
V
G
T
L
P
T
I
C
G
V
S
V
P
Y
P
F
N
F
S
T
N
C
D
T
I
S
I
A
V
38
94.80
100%
-151
- C- -
M038
-
A:
[1-121]
H
I
T
C
G
I
V
T
S
T
L
A
Q
C
M
G
Y
L
T
N
F
F
P
V
P
S
D
Y
C
C
A
E
V
K
G
L
N
Q
M
A
Q
T
T
P
D
R
R
Q
V
C
K
C
L
K
A
V
A
K
E
N
K
G
F
I
S
I
E
L
V
G
T
L
P
T
I
C
G
V
S
V
P
Y
P
F
N
F
S
T
N
C
D
T
I
S
I
A
V
44
53.27
100%
-30
- C- -
M044
-
A:
[2-97]
H
I
T
C
G
I
V
T
S
T
L
A
Q
C
M
G
Y
L
T
N
F
F
P
V
P
S
D
Y
C
C
A
E
V
K
G
L
N
Q
M
A
Q
T
T
P
D
R
R
Q
V
C
K
C
L
K
A
V
A
K
E
N
K
G
F
I
S
I
E
L
V
G
T
L
P
T
I
C
G
V
S
V
P
Y
P
F
N
F
S
T
N
C
D
T
I
S
I
A
V
43
52.08
100%
-26
- C- -
M043
-
A:
[2-97]
H
I
T
C
G
I
V
T
S
T
L
A
Q
C
M
G
Y
L
T
N
F
F
P
V
P
S
D
Y
C
C
A
E
V
K
G
L
N
Q
M
A
Q
T
T
P
D
R
R
Q
V
C
K
C
L
K
A
V
A
K
E
N
K
G
F
I
S
I
E
L
V
G
T
L
P
T
I
C
G
V
S
V
P
Y
P
F
N
F
S
T
N
C
D
T
I
S
I
A
V