@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-03 )
HITCGTVTSTMTQCISYLTNGGPLPSSCCVAVKSLNQMAQTTPDRRQVCECLKSAGKEIKGLNIDLVAALPTTCGVSLSYPIGFNTNCDSISIAV
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...-......10........----20---.----.----.--------------.------.----.---...30........40----------.------------........50....-....-------60---------.---------.-------.----------......70-.........80.....---...90....------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HIT-CGTVTSTMTQCISYLT----N----G----G----P--------------L------P----S---SCCVAVKSLNQMAQ-----------T------------TPDRRQVCECLKSA-GKEI-------K----------G---------L-------N----------IDLVAAL--PTTCGVSLSYPIGFNT---NCDSISIAV------------------------------------------------------------------------------------
15
HHSearch
93.03
46%
-137
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
-
C
G
Q
V
Q
G
N
L
A
Q
C
I
G
F
L
Q
----
K
----
G
----
G
----
V
--------------
V
------
P
----
P
---
S
C
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
------------
T
A
D
R
R
A
V
C
S
C
L
K
A
A
-
A
G
A
V
-------
R
----------
G
---------
I
-------
N
----------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
I
S
T
S
T
---
N
C
N
S
I
N
---------------------------------------------------------------------------------------
12
HHSearch
92.49
43%
-147
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
-
C
G
Q
V
S
S
S
L
A
P
C
I
P
Y
V
R
----
G
----
G
----
G
----
A
--------------
V
------
P
----
P
---
A
C
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
------------
T
P
D
R
Q
A
A
C
N
C
L
K
Q
L
-
S
A
S
V
-------
P
----------
G
---------
V
-------
N
----------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
I
S
A
S
T
---
N
C
A
T
V
K
---------------------------------------------------------------------------------------
28
SP3
92.44
42%
-137
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
-
C
G
Q
V
A
S
A
I
A
P
C
I
S
Y
A
R
----
G
----
Q
----
G
----
S
G-------------
P
------
S
----
A
---
G
C
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
------------
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
G
V
-------
S
----------
G
---------
L
-------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
---
D
C
S
R
V
N
---------------------------------------------------------------------------------------
13
HHSearch
92.06
43%
-140
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
-
C
G
Q
V
A
S
A
I
A
P
C
I
S
Y
A
R
----
G
----
Q
----
G
----
S
G-------------
P
------
S
----
A
---
G
C
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
------------
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
G
V
-------
S
----------
G
---------
L
-------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
---
D
C
S
R
V
N
---------------------------------------------------------------------------------------
14
HHSearch
91.69
46%
-140
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
-
C
G
Q
V
T
S
N
L
A
P
C
L
A
Y
L
R
----
N
----
T
----
G
-------------------
P
------
L
----
G
---
R
C
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
------------
T
E
D
R
Q
I
A
C
T
C
L
K
S
A
-
A
G
A
I
-------
S
----------
G
---------
I
-------
N
----------
L
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
Y
K
I
S
P
S
T
---
D
C
S
K
V
Q
---------------------------------------------------------------------------------------
16
HHSearch
90.20
38%
-146
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
-
C
G
H
V
D
S
L
V
R
P
C
L
S
Y
V
Q
----
G
----
G
----
P
----
G
--------------
P
------
S
----
G
---
Q
C
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
------------
Q
S
D
R
Q
S
A
C
N
C
L
K
G
I
-
A
R
G
I
-------
H
----------
N
---------
L
-------
N
----------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
I
S
L
N
I
---
D
C
S
R
V
----------------------------------------------------------------------------------------
26
HHSearch
65.12
27%
-140
- C2 -
1SM7
-
?
A:
[13-101]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
H
L
R
A
C
Q
Q
W
I
R
----
Q
QLA-
G
----
S
----
P
F
S
E
NQWGPQQGPS-
L
------
R
----
E
---
Q
C
C
N
E
L
Y
Q
E
-------------------------------
D
Q
V
C
V
C
P
T
L
K
Q
A
-
A
K
S
V
-------
R
VQ--------
G
Q--------
H
-------
G
PFQST
R
I
---
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
-------------------------------------------------------------------------------------------------------
33
SP3
61.20
12%
-164
- C2 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MCYPGQAFQ
V
--------
P
A
L
P
A
C
R
P
L
L
R
----
L
Q
C
N
-
G
----
S
----
Q
--------------
V
------
P
E
A
V
L
R
---
D
C
C
Q
Q
L
A
H
I
-------------------------------
S
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
S
M
Y
K
E
HGAF
P
----------
R
---------
C
-------
R
R
E
V
V
------
K
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
--
V
D
A
S
G
---
D
G
A
Y
V
C
K
D
V
A
A
YPDA------------------------------------------------------------------------------
23
HHSearch
59.28
22%
-158
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
L
P
S
C
R
W
Y
V
T
S
R
TC
G
----
I
----
G
----
P
R-------------
L
P
W
P
E
L
-
K
----
R
---
R
C
C
R
E
L
A
D
I
-------------------------------
P
A
Y
C
R
C
T
A
L
S
I
L
-
M
D
G
A
-------
I
P
P
G
PDAQ---
L
E
G
R
------
L
-------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
-------------------------------------------------------------------------------------------------------
2
Fugue
58.46
24%
-96
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
D
L
-
C
G
M
S
Q
D
E
L
N
E
C
K
P
A
V
S
----
K
----
E
----
N
----
P
--------------
T
------
S
PS--
Q
---
P
C
C
T
A
L
Q
H
A
-------------------------------
D
F
A
C
L
C
G
Y
K
N
S
P
-
W
L
G
S
-------
F
----------
G
---------
V
-------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
------
P
---
T
C
-------------------------------------------------------------------------------------------
17
HHSearch
57.66
23%
-131
- C2 -
2RKN
2
DIRL1_ARATH
A:
[2-75]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
L
-
C
G
M
S
Q
D
E
L
N
E
C
K
P
A
V
S
----
K
----
E
----
N
PT--
S
--------------
P
------
S
----
Q
---
P
C
C
T
A
L
Q
H
A
-------------------------------
D
F
A
C
L
C
G
Y
K
N
S
P
W
L
G
S
F
------------------
G
---------
V
-------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
------------------------------------------------------------------------------------------------------
21
HHSearch
55.95
17%
-137
- C2 -
1B1U
-
IAAT_ELECO
A:
[15-109]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
L
D
S
C
R
W
Y
V
S
----
T
R
T
CG
V
----
G
----
P
RLA
T
Q
E
--------
M
------
K
----
A
---
R
C
C
R
Q
L
E
A
I
-------------------------------
P
A
Y
C
R
C
E
A
V
R
I
L
-
M
D
G
V
-------
V
T
PS-------
G
Q
H
E
G
RLLQD
L
-------
P
GCP
R
Q
V
Q
R
A
-
F
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
H
------------------------------------------------------------------------------------------------------
22
HHSearch
55.19
25%
-99
- C2 -
1PSY
-
2SS_RICCO
A:
[25-117]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
L
S
S
C
E
R
Y
L
R
----
Q
----
S
S
S
R
R
S
T
GEE
V
LRMPGDENQQQESQ
Q
------
L
----
Q
---
Q
C
C
N
Q
V
K
Q
V
-------------------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
D
Q
-------
I
Q
Q
--------
G
Q--------
L
HGEE
S
E
R
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
R
---------------------------------------------------------------------------------------------------------
31
SP3
52.29
12%
-139
* C3 *
1QPO
-
NADC_MYCTU
A:
[116-284]
-----------------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
A
G
----
S
V
V
D
A
L
R
A
V
R
----
N
----
A
----
A
----
P
--------------
D
------
L
----
P
C
E
V
E
V
D
S
-
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
------------
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
T
V
-------
M
L
E
S
S
G
-----
G
---------
L
-------
S
----------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
---
L
A
V
G
A
LTH
S
V
R
V
L
D
I
G
L
D
M----------------------------------------------------------------------------------
19
HHSearch
44.33
20%
-110
- C2 -
1N89
1
NLT2G_WHEAT
A:
[4-65]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
Q
L
A
V
C
A
S
A
I
L
----
S
----
G
----
A
----
K
--------------
P
------
S
----
G
---
E
C
C
G
N
L
R
A
----------------------------------
Q
Q
G
C
F
C
Q
Y
A
K
-
D
P
T
Y
G
------
Q
----------
Y
---------
I
-------
R
----------
S
P
H
A
R
D
T
--
L
T
S
C
G
L
A
V
P
-------------------------------------------------------------------------------------------------------
32
SP3
44.26
14%
-82
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
-
C
--
N
A
G
Q
L
T
V
C
T
G
A
I
A
----
G
----
G
----
A
----
R
--------------
P
------
T
----
A
---
A
C
C
S
S
L
R
A
----------------------------------
Q
Q
G
C
F
C
Q
F
A
K
-
D
P
R
Y
-------
G
----------
R
Y--------
V
-------
N
----------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
----------
T
C
H
------------------------------------------------------------------------------------------
18
HHSearch
43.09
20%
-75
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[6-66]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Q
L
T
V
C
T
G
A
I
A
----
G
----
G
----
A
----
R
--------------
P
------
T
----
A
---
A
C
C
S
S
L
R
A
----------------------------------
Q
Q
G
C
F
C
Q
F
A
K
-
D
P
R
Y
G------
R
----------
Y
---------
V
-------
N
----------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
-------------------------------------------------------------------------------------------------------
25
HHSearch
42.41
22%
-92
* C2 *
3OB4
-
?
A:
[427-485]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
------
Q
----
E
---
R
C
C
N
E
L
N
E
F
E
-----------------------------
N
N
Q
R
C
M
C
E
A
L
Q
Q
I
-
M
E
N
Q
S
DRL---
Q
----------
G
---------
R
-------
Q
Q
E
Q
Q
F
-----
K
R
E
L
R
N
L
--
P
Q
Q
C
G
L
R
A
P
-------------------------------------------------------------------------------------------------------
3
Fugue
39.16
14%
-90
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
-
C
--
N
A
G
Q
L
T
V
C
T
G
A
I
A
----
G
----
G
----
A
----
R
--------------
P
------
T
----
A
---
A
C
C
S
S
L
R
A
Q
Q
G
C
F
C
-----------
Q
------------
F
A
K
D
P
R
Y
G
R
Y
V
N
S
P
-
N
-----------------------------------------------------
A
R
K
A
--
V
S
S
C
G
I
A
-------
L
P
---
T
C
H
------------------------------------------------------------------------------------------
37
SP3
38.90
11%
-96
- C3 -
1YTD
-
PNCB_THEAC
A:
[1-389]
MNVFNTAS
D
E
D
I
K
K
GLASDVY
F
E
R
T
I
S
A
I
GDKCND
L
R
V
A
M
E
A
T
V
SGPLDTWINFTG
L
D
E
V
L
K
L
LEGLD
V
D
L
Y
A
I
P
EG
T
I
L
F
PRDANGLPVPF
I
R
V
E
G
RYCDFGMY
E
T
A
I
L
G
F
I
C
Q
A
S
G
I
S
T
K
A
S
K
V
R
L
A
A
GD
S
P
F
F
S
FGIRRMHPAI
S
P
M
I
D
R
S
A
Y
I
G
GADGVSG
I
L
G
A
K
L
I
DQD
P
V
G
T
M
P
H
A
L
S
I
-
M
L
G
D
E
E
A
W
K
L
T
L
E
N
T
K
----
N
----
G
----
Q
----
K
--------------
S
V
L
L
I
DT
Y
----
M
---
D
E
K
F
A
A
I
K
I
A
E
M
F
D
-----------
K
VD
Y
I
R
L
DTPSSR
R
G
N
F
E
A
L
I
R
E
V
R
W
E
-
L
A
L
R
-------
G
RSD
I
K
I
M
V
S
G
G
---------
L
-------
D
----------
E
N
T
V
K
K
L
---
R
E
A
G
A
E
A
-
F
G
V
G
T
S
I
S--
S
A
K
P
F
D
F
A
M
D
IVEVNG
K
P
E
T
K
RG
K
M
S
G
R
K
N
V
L
R
C
TSCH
R
I
E
V
V
P
ANVQ
E
K
T
C
ICG
G
S
M
Q
N
LLVKYLSHGKRT
S
E
Y
P
R
P
K
E
I
R
S
R
S
M
K
E
L
E
YFK
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
HITCGTVTSTMTQCISYLTNGGPLPSSCCVAVKSLNQMAQTTPDRRQVCECLKSAGKEIKGLNIDLVAALPTTCGVSLSYPIGFNTNCDSISIAV
42
97.25
100%
-159
- C- -
M042
-
A:
[1-96]
H
I
T
C
G
T
V
T
S
T
M
T
Q
C
I
S
Y
L
T
N
G
G
P
L
P
S
S
C
C
V
A
V
K
S
L
N
Q
M
A
Q
T
T
P
D
R
R
Q
V
C
E
C
L
K
S
A
G
K
E
I
K
G
L
N
I
D
L
V
A
A
L
P
T
T
C
G
V
S
L
S
Y
P
I
G
F
N
T
N
C
D
S
I
S
I
A
V
41
96.65
100%
-176
- C- -
M041
-
A:
[1-150]
H
I
T
C
G
T
V
T
S
T
M
T
Q
C
I
S
Y
L
T
N
G
G
P
L
P
S
S
C
C
V
A
V
K
S
L
N
Q
M
A
Q
T
T
P
D
R
R
Q
V
C
E
C
L
K
S
A
G
K
E
I
K
G
L
N
I
D
L
V
A
A
L
P
T
T
C
G
V
S
L
S
Y
P
I
G
F
N
T
N
C
D
S
I
S
I
A
V
45
94.47
100%
-164
- C- -
M045
-
A:
[1-127]
H
I
T
C
G
T
V
T
S
T
M
T
Q
C
I
S
Y
L
T
N
G
G
P
L
P
S
S
C
C
V
A
V
K
S
L
N
Q
M
A
Q
T
T
P
D
R
R
Q
V
C
E
C
L
K
S
A
G
K
E
I
K
G
L
N
I
D
L
V
A
A
L
P
T
T
C
G
V
S
L
S
Y
P
I
G
F
N
T
N
C
D
S
I
S
I
A
V