@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-04 )
AITCGRVDTALAPCLGYLQGGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIRV
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......--..10--........----------------------.-------------20---.--.------------.-------------------.----------.----...---.30........40----------.........50....-....-------60------.---------.---------.----------.-------.....70-.........80........90..----------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AITCGRV--DTA---LAPCLGYL----------------------Q-------------G----G--P------------G-------------------P----------S----AQC---CGGVRNLNSAAV-----------TTPDRQAACNCLKSA-AGSI-------S-------R---------L---------N----------A-------NNAAAL--PGKCVVNIPYKISTSTNCATIRV----------
23
HHSearch
90.92
59%
-115
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
C
G
Q
V
--
T
S
N
---
L
A
P
C
L
A
Y
L
----------------------
R
-------------
N
----
T
--
G
--------------------------------
P
----------
L
----
G
R
C
---
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
L
K
S
A
-
A
G
A
I
-------
S
-------
G
---------
I
---------
N
----------
L
-------
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
Y
K
I
S
P
S
T
D
C
S
K
V
Q
-----------
26
HHSearch
90.01
54%
-111
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
--
D
S
L
---
V
R
P
C
L
S
Y
V
----------------------
Q
-------------
G
----
G
--
P
------------
G
-------------------
P
----------
S
----
G
Q
C
---
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
L
K
G
I
-
A
R
G
I
-------
H
-------
N
---------
L
---------
N
----------
E
-------
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
I
S
L
N
I
D
C
S
R
V
------------
22
HHSearch
87.40
62%
-111
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
Q
V
--
S
S
S
---
L
A
P
C
I
P
Y
V
----------------------
R
-------------
G
----
G
--
G
------------
A
-------------------
V
----------
P
----
P
A
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
K
Q
L
-
S
A
S
V
-------
P
-------
G
---------
V
---------
N
----------
P
-------
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
I
S
A
S
T
N
C
A
T
V
K
-----------
11
SP3
85.96
60%
-109
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
A
---
I
A
P
C
I
S
Y
A
----------------------
R
-------------
G
----
Q
--
G
------------
S
G------------------
P
----------
S
----
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
G
V
-------
S
-------
G
---------
L
---------
N
----------
A
-------
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
-----------
24
HHSearch
85.12
61%
-107
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
A
---
I
A
P
C
I
S
Y
A
----------------------
R
-------------
G
----
Q
--
G
------------
S
G------------------
P
----------
S
----
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
G
V
-------
S
-------
G
---------
L
---------
N
----------
A
-------
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
-----------
25
HHSearch
85.00
57%
-114
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
--
Q
G
N
---
L
A
Q
C
I
G
F
L
----------------------
Q
-------------
K
----
G
--
G
------------
V
-------------------
V
----------
P
----
P
S
C
---
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
L
K
A
A
-
A
G
A
V
-------
R
-------
G
---------
I
---------
N
----------
P
-------
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
I
S
T
S
T
N
C
N
S
I
N
-----------
38
HHSearch
67.57
23%
-147
- C2 -
1HSS
-
IAA1_WHEAT
A:
[15-106]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
A
---
L
P
A
C
R
P
L
L
----------------------
R
-------------
L
Q
C
N
-
G
--
S
------------
Q
VP
E
A
---------------
V
----------
L
----
R
D
C
---
C
Q
Q
L
A
H
I
S
-------------------
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
S
M
-------
Y
K
E
H-----GAFPRCR
R
E
V
---------
V
----------
K
-------
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
V
D
----------------------
35
HHSearch
59.02
29%
-118
- C2 -
1SM7
-
?
A:
[13-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
H
---
L
R
A
C
Q
Q
W
I
----------------------
R
-------------
Q
QLA-
G
S
-
P
F
S
E
NQWGPQQGP
S
-------------------
L
----------
R
----
E
Q
C
---
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
K
Q
A
-
A
K
S
V
-------
R
VQ-----
G
Q--------
H
---------
G
----------
P
FQST
R
I
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
------------------------
32
HHSearch
57.23
21%
-144
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
---
L
P
S
C
R
W
Y
V
----------------------
T
S
R
TC---------
G
----
I
--
G
------------
P
RLP
W
P
E
-------------
L
----------
K
----
R
R
C
---
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
S
I
L
-
M
D
G
A
-------
I
P
P
G
PDAQ
L
E
G
R
------
L
---------
E
D
LPGCP
R
E
V
Q
R
-------
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
------------------------
17
SP3
56.60
19%
-144
* C2 *
1HSS
-
IAA1_WHEAT
A:
[5-124]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------MCYPGQ
A
F
Q
------
V
P
A
---
L
P
A
C
R
P
L
L
----------------------
R
-------------
L
Q
C
N
-
G
--
S
------------
Q
-------------------
V
----------
P
E
A
V
L
R
D
C
---
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
S
M
Y
K
E
HGAF
P
-------
R
---------
C
---------
R
R
E
V
V
------
K
-------
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
----
V
D
A
S
G
D
G
A
Y
V
C
K
D
V
A
A
YPDA
40
HHSearch
54.43
18%
-115
- C2 -
2LVF
-
?
A:
[16-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
M
---
L
S
H
C
R
M
Y
M
----------------------
R
-------------
Q
Q
M
E
E
S
--
T
------------
Y
-------------------
Q
TMPRRGMEP
H
M
----
S
E
C
---
C
E
Q
L
E
G
M
-------------------
D
E
S
C
R
C
E
G
L
R
M
M
-
M
R
M
M
-------
Q
Q
K
E----
M
Q
--------
P
R
G
E
Q
M
R
R
--
M
----------
M
-------
R
L
A
E
N
I
--
P
S
R
C
N
L
S
--------------------------
36
HHSearch
54.39
26%
-89
- C2 -
1PSY
-
2SS_RICCO
A:
[25-122]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
---
L
S
S
C
E
R
Y
L
----------------------
R
-------------
Q
S
S
S
-
R
--
R
------------
S
T
GEEVLRMPGDENQQQESQ
Q
----------
L
----
Q
Q
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
D
Q
-------
I
Q
Q
-----
G
Q--------
L
HGEE
S
E
R
--
V
----------
A
-------
Q
R
A
G
E
I
--
V
S
S
C
G
V
--
R
C
M
R
Q
T
-------------------
6
Fugue
51.87
22%
-78
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
--
M
E
E
A
EM
L
N
H
C
G
M
Y
L
----------------------
M
KNLGERSQVSPR
M
R
----
E
--
E
------------
D
-------------------
H
----------
K
----
Q
L
C
---
C
M
Q
L
K
N
L
-------------------
D
E
K
C
M
C
P
A
I
M
M
M
-
L
N
E
P
MWIRM--
R
-------
D
---------
Q
---------
V
----------
M
-------
S
M
A
H
N
L
--
P
I
E
C
N
L
-------
M
S
Q
P
C
Q
M
-------------
5
Fugue
49.56
24%
-74
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
Q
E
VQ
R
K
D
---
L
S
S
C
E
R
Y
L
R
Q
S
S
S
R
R
S
T
GEEVLRMPGDENQ
Q
-------------
Q
----
E
--
S
------------
Q
-------------------
Q
----------
L
----
Q
Q
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
D
Q
-------
I
-------
Q
---------
Q
---------
G
QLHGEE
S
E
R
V
A
-------
Q
R
A
G
E
I
--
V
S
S
C
--
G
V
R
C
M
R
Q
T
R
T
N
----------------
39
HHSearch
48.61
18%
-90
- C2 -
1W2Q
-
CONG_ARAHY
A:
[22-114]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
N
---
L
K
P
C
E
Q
H
I
----------------------
M
-------------
Q
R
I
M-
G
--
E
QEQ---------
Y
DSYDIRSTR
S
S
D
-------
Q
----------
Q
----
Q
R
C
---
C
D
E
L
N
E
M
E
----------------
N
-
T
Q
G
C
M
C
E
A
L
Q
Q
I
-
M
E
N
Q
-------
C
DRLQ---
D
---------
R
---------
Q
MV
Q
Q
F
-----
K
-------
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
------------------------
2
Fugue
47.38
22%
-81
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
D
L
C
G
M
S
--
Q
D
E
---
L
N
E
C
K
P
A
V
----------------------
S
-------------
K
----
E
NP
T
------------
S
-------------------
P
----------
S
----
Q
P
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
S
P
-
W
L
G
S
-------
F
-------
G
---------
V
---------
D
----------
P
-------
E
L
A
S
A
L
--
P
K
Q
C
------
G
L
A
N
A
P
T
C
---------------
27
HHSearch
47.16
26%
-100
- C2 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
--
Q
D
E
---
L
N
E
C
K
P
A
V
----------------------
S
-------------
K
----
E
--
N
PT----------
S
-------------------
P
----------
S
----
Q
P
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
S
P
W
L
G
S
F
---------------
G
---------
V
---------
D
----------
P
-------
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
-----------------------
31
HHSearch
46.83
14%
-131
- C2 -
1B1U
-
IAAT_ELECO
A:
[15-109]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
---
L
D
S
C
R
W
Y
V
----------------------
S
-------------
T
R
T
CG
V
--
G
------------
P
RLA
T
Q
E
-------------
M
----------
K
----
A
R
C
---
C
R
Q
L
E
A
I
-------------------
P
A
Y
C
R
C
E
A
V
R
I
L
-
M
D
G
V
-------
V
T
PS----
G
Q
H
E
G
RLLQD
L
PGCP
R
Q
V
Q
R
A
----------
F
-------
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
H
-----------------------
15
SP3
44.67
19%
-105
- C2 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
-
A
G
S
V
--
V
D
A
---
L
R
A
V
R
N
A
----------------------------------------------------------
A
-------------------
P
----------
D
----
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
T
V
-------
M
L
E
S
S
G
--
G
---------
L
---------
S
----------
L
-------
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
---
L
A
V
G
A
L
T
H
S
V
R
V
L
D
I
G
L
D
M---
20
SP3
44.21
19%
-104
- C2 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
-
A
G
S
V
--
V
D
A
---
L
R
A
V
R
N
A
----------------------------------------------------------
A
-------------------
P
----------
D
----
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
T
V
M
L
E
S
S
--
G
-------
G
---------
L
---------
S
----------
L
-------
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
---
L
A
V
G
A
L
T
H
S
V
R
V
L
D
I
G
L
D
M---
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90..
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AITCGRVDTALAPCLGYLQGGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIRV
43
94.32
100%
-113
- C- -
M043
-
A:
[1-151]
A
I
T
C
G
R
V
D
T
A
L
A
P
C
L
G
Y
L
Q
G
G
P
G
P
S
A
Q
C
C
G
G
V
R
N
L
N
S
A
A
V
T
T
P
D
R
Q
A
A
C
N
C
L
K
S
A
A
G
S
I
S
R
L
N
A
N
N
A
A
A
L
P
G
K
C
V
V
N
I
P
Y
K
I
S
T
S
T
N
C
A
T
I
R
V
42
93.21
100%
-111
- C- -
M042
-
A:
[1-93]
A
I
T
C
G
R
V
D
T
A
L
A
P
C
L
G
Y
L
Q
G
G
P
G
P
S
A
Q
C
C
G
G
V
R
N
L
N
S
A
A
V
T
T
P
D
R
Q
A
A
C
N
C
L
K
S
A
A
G
S
I
S
R
L
N
A
N
N
A
A
A
L
P
G
K
C
V
V
N
I
P
Y
K
I
S
T
S
T
N
C
A
T
I
R
V
45
89.01
100%
-117
- C- -
M045
-
A:
[1-94]
A
I
T
C
G
R
V
D
T
A
L
A
P
C
L
G
Y
L
Q
G
G
P
G
P
S
A
Q
C
C
G
G
V
R
N
L
N
S
A
A
V
T
T
P
D
R
Q
A
A
C
N
C
L
K
S
A
A
G
S
I
S
R
L
N
A
N
N
A
A
A
L
P
G
K
C
V
V
N
I
P
Y
K
I
S
T
S
T
N
C
A
T
I
R
V