@TOME V2.3
(Nov 2016)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 234_tI_CITSI: (2014-05-04 )
ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNLNNAAGLPGACGVSIPYKISTSTDCSKVR
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------...--...--..--.10........----20---.----------------------.---------------.-----------.--.----....30........-----------40........50...--...-.-------.-------60--------.-------.----------.......------70........80........90---------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ITC--GQV--SG--
S
L
A
P
C
I
G
F
L
RS----G----G----------------------P---------------I-----------P--M----
P
C
C
N
G
V
R
S
L
N
A
AAR-----------TTP
D
R
Q
T
A
C
N
C
L
K
Q
A
--AGS-I-------P-------N---------L-------N----------LNNAAGL------PGACGVS
I
P
Y
K
ISTSTDCSKVR---------
1
HHSearch
94.48
68%
-131
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[2-92]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
--
G
Q
V
--
S
S
--
S
L
A
P
C
I
P
Y
V
R
G
----
G
----
G
----------------------
A
---------------
V
-----------
P
--
P
----
A
C
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
K
Q
L
--
S
A
S
-
V
-------
P
-------
G
---------
V
-------
N
----------
P
N
N
A
A
A
L
------
P
G
K
C
G
V
S
I
P
Y
K
I
S
A
S
T
N
C
A
T
V
K
---------
3
HHSearch
89.39
63%
-127
- C3 -
1T12
-
NLTP1_TOBAC
A:
[2-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
--
G
Q
V
--
T
S
--
N
L
A
P
C
L
A
Y
L
R
N
----
T
----
G
--------------------------------------
P
-----------
L
--
G
----
R
C
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
L
K
S
A
--
A
G
A
-
I
-------
S
-------
G
---------
I
-------
N
----------
L
G
K
A
A
G
L
------
P
S
T
C
G
V
N
I
P
Y
K
I
S
P
S
T
D
C
S
K
V
Q
---------
30
SP3
88.77
61%
-130
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
S
C
--
G
Q
V
--
A
S
--
A
I
A
P
C
I
S
Y
A
R
G
----
Q
----
G
----------------------
S
G--------------
P
-----------
S
--
A
----
G
C
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
--
A
A
G
-
V
-------
S
-------
G
---------
L
-------
N
----------
A
G
N
A
A
S
I
------
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
---------
4
HHSearch
88.38
57%
-132
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
--
G
Q
V
--
Q
G
--
N
L
A
Q
C
I
G
F
L
Q
K
----
G
----
G
----------------------
V
---------------
V
-----------
P
--
P
----
S
C
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
L
K
A
A
--
A
G
A
-
V
-------
R
-------
G
---------
I
-------
N
----------
P
N
N
A
E
A
L
------
P
G
K
C
G
V
N
I
P
Y
K
I
S
T
S
T
N
C
N
S
I
N
---------
2
HHSearch
83.98
62%
-124
- C3 -
1AFH
-
NLTP_MAIZE
A:
[2-93]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
C
--
G
Q
V
--
A
S
--
A
I
A
P
C
I
S
Y
A
R
G
----
Q
----
G
----------------------
S
G--------------
P
-----------
S
--
A
----
G
C
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
--
A
A
G
-
V
-------
S
-------
G
---------
L
-------
N
----------
A
G
N
A
A
S
I
------
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
---------
6
HHSearch
81.70
47%
-131
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
--
G
H
V
--
D
S
--
L
V
R
P
C
L
S
Y
V
Q
G
----
G
----
P
----------------------
G
---------------
P
-----------
S
--
G
----
Q
C
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
L
K
G
I
--
A
R
G
-
I
-------
H
-------
N
---------
L
-------
N
----------
E
D
N
A
R
S
I
------
P
P
K
C
G
V
N
L
P
Y
T
I
S
L
N
I
D
C
S
R
V
----------
16
HHSearch
62.96
32%
-145
- C3 -
1SM7
-
?
A:
[13-101]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
H
L
R
A
C
Q
Q
W
I
R
Q
QLA-
G
----
S
----------------------
P
F
S
E
NQWGPQQGPS--
L
-----------
R
--
E
----
Q
C
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
K
Q
A
--
A
K
S
-
V
-------
R
VQ-----
G
Q--------
H
-------
G
PFQST
R
I
---
Y
Q
I
A
K
N
L
------
P
N
V
C
N
M
K
Q
I
----------------------
37
SP3
61.97
24%
-138
* C3 *
1HSS
-
IAA1_WHEAT
A:
[5-124]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
C
YP
G
Q
A
FQ
V
P
--
A
L
P
A
C
R
P
L
L
R
L
Q
C
N
-
G
----
S
----------------------
Q
---------------
V
-----------
P
--
E
A
V
L
R
D
C
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
S
M
--
L
D
S
-
M
Y
K
E
HGAF
P
-------
R
---------
C
-------
R
R
E
V
V
------
K
L
T
A
A
S
I
------
T
A
V
C
R
L
P
I
V
--
V
D
A
S
G
D
G
A
Y
V
C
K
D
V
A
A
YPDA
18
HHSearch
58.47
22%
-158
- C3 -
1HSS
-
IAA1_WHEAT
A:
[15-106]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
--
A
L
P
A
C
R
P
L
L
R
L
Q
C
N
-
G
----
S
----------------------
Q
VP
E
A
-----------
V
-----------
L
--
R
----
D
C
C
Q
Q
L
A
H
I
S
-------------------
E
W
C
R
C
G
A
L
Y
S
M
--
L
D
S
-
M
-------
Y
K
E
H-----GAFPRCR
R
E
V
-------
V
----------
K
L
T
A
A
S
I
------
T
A
V
C
R
L
P
I
V
V
D
--------------------
12
HHSearch
56.83
22%
-145
- C3 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
L
P
S
C
R
W
Y
V
T
S
R
TCG
I
----
G
----------------------
P
R--------------
L
P
W
P
E
L
------
K
--
R
----
R
C
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
S
I
L
--
M
D
G
-
A
-------
I
P
P
G
PDAQ
L
E
G
R
------
L
-------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT----
E
A
E
C
N
L
A
T
I
----------------------
36
SP3
53.61
20%
-98
- C3 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
--
N
H
V
--
A
A
A
G
S
V
V
D
A
L
R
A
V
R
N
----
A
----
A
----------------------
P
---------------
D
-----------
L
--
P
C
E
V
-
E
V
D
S
-
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
--
A
P
T
-
V
M
L
E
S
S
--
G
-------
G
---------
L
-------
S
----------
L
Q
T
A
A
T
Y
-------
A
E
T
G
V
D
Y
---
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M-
19
HHSearch
52.47
20%
-100
- C3 -
2LVF
-
?
A:
[16-101]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
M
L
S
H
C
R
M
Y
M
R
Q
Q
M
E
-
E
----
S
----------------------
T
---------------
Y
QTMPRRGMEP
H
M
--
S
----
E
C
C
E
Q
L
E
G
M
-------------------
D
E
S
C
R
C
E
G
L
R
M
M
--
M
R
M
M
Q
Q
K
EM
Q
P
-
R
-------
G
E
Q
M
R
-----
R
-------
M
----------
M
R
L
A
E
N
I
------
P
S
R
C
N
L
S
------------------------
34
SP3
52.43
20%
-98
- C3 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
--
N
H
V
--
A
A
A
G
S
V
V
D
A
L
R
A
V
R
N
----
A
----
A
----------------------
P
---------------
D
-----------
L
--
P
C
E
V
-
E
V
D
S
-
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
--
A
P
T
-
V
M
L
E
S
S
--
G
-------
G
---------
L
-------
S
----------
L
Q
T
A
A
T
Y
-------
A
E
T
G
V
D
Y
---
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M-
28
Fugue
52.00
21%
-38
- C3 -
1PSY
-
2SS_RICCO
A:
[1-125]
----------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
--
R
Q
E
VQ
R
K
--
D
L
S
S
C
E
R
Y
L
R
Q
----
S
----
S
S
R
R
S
T
GEEVLRMPGDENQQQES
Q
---------------
Q
-----------
L
--
Q
----
Q
C
C
N
Q
V
K
Q
V
R
D
E
C
Q
-----------
C
E
A
I
K
Y
I
A
E
D
Q
I
Q
Q
G
QL
H
G
E
-
E
-------
S
-------
E
---------
R
-------
V
----------
A
Q
R
A
G
E
I
------
V
S
S
C
G
V
R
C
M
R
Q
T
R
T
N
----------------
13
HHSearch
50.52
25%
-78
- C3 -
1PSY
-
2SS_RICCO
A:
[25-121]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
D
L
S
S
C
E
R
Y
L
R
Q
----
S
S
S
R
R
S
T
GE-------------------
E
VLRMPGDENQQQESQ
Q
-----------
L
--
Q
----
Q
C
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
--
A
E
D
-
Q
-------
I
Q
Q
-----
G
Q--------
L
HGEE
S
E
R
V
----------
A
Q
R
A
G
E
I
------
V
S
S
C
G
V
--
R
C
M
R
Q
------------------
7
HHSearch
49.86
23%
-115
- C3 -
2RKN
2
DIRL1_ARATH
A:
[4-75]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
C
--
G
M
S
--
Q
D
--
E
L
N
E
C
K
P
A
V
S
K
----
E
----
N
PT--------------------
S
---------------
P
-----------
S
--
Q
----
P
C
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
S
P
W
-
L
G
S
-
F
---------------
G
---------
V
-------
D
----------
P
E
L
A
S
A
L
------
P
K
Q
C
G
L
A
N
A
P
---------------------
22
Fugue
47.39
21%
-106
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
----
N
--
A
G
--
Q
L
T
V
C
T
G
A
I
A
G
----
G
----
A
----------------------
R
---------------
P
-----------
T
--
A
----
A
C
C
S
S
L
R
A
Q
Q
G
C
F
C
-----------
Q
F
A
K
D
P
R
Y
G
R
Y
V
N
S
-----------------------------------------------------
P
N
A
R
K
A
------
V
S
S
C
G
I
A
L
P
T
-------
C
H
------------
39
SP3
47.21
18%
-73
- C3 -
1NGK
-
TRHBO_MYCTU
A:
[3-128]
----------------------------------------------------------------------------------------------------------------------------------------KS
F
Y
D
A
V
GG
A
K
T
F
D
A
I
V
S
R
F
Y
A
Q
V
A
E
D
E
V
L
R
R
V
Y
P
E
--
D
D
L
--
A
G
--
A
E
E
R
L
R
M
F
L
E
Q
Y
W
--
G
----
G
----------------------
P
---------------
R
-----------
T
--
Y
----
S
E
Q
R
G
H
P
R
L
R
M
R
H
A
PFRI-------
S
L
I
E
R
D
A
W
L
R
C
M
H
T
A
--
V
A
S
-
I
-------
D
SE-----
T
---------
L
-------
D
----------
D
E
H
R
R
E
L
L
D
Y
L
E
M
A
A
H
S
L
V
N
S
P
F
---------------------
21
Fugue
47.04
21%
-86
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AI
D
L
C
--
G
M
S
--
Q
D
--
E
L
N
E
C
K
P
A
V
S
K
----
E
----
N
----------------------
P
---------------
T
-----------
S
PS
Q
----
P
C
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
S
P
--
W
L
G
-
S
-------
F
-------
G
---------
V
-------
D
----------
P
E
L
A
S
A
L
------
P
K
Q
C
G
L
A
N
A
------
P
T
C
-------------
32
SP3
47.03
20%
-96
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
----
N
--
A
G
--
Q
L
T
V
C
T
G
A
I
A
G
----
G
----
A
----------------------
R
---------------
P
-----------
T
--
A
----
A
C
C
S
S
L
R
A
----------------------
Q
Q
G
C
F
C
Q
F
A
K
--
D
P
R
-
Y
-------
G
-------
R
Y--------
V
-------
N
----------
S
P
N
A
R
K
A
------
V
S
S
C
G
I
A
L
P
-------
T
C
H
------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ITCGQVSG
S
L
A
P
C
I
G
F
L
RSGGPIPM
P
C
C
N
G
V
R
S
L
N
A
AARTTP
D
R
Q
T
A
C
N
C
L
K
Q
A
AGSIPNLNLNNAAGLPGACGVS
I
P
Y
K
ISTSTDCSKVR
45
95.94
100%
-138
- C- -
M045
-
A:
[1-93]
I
T
C
G
Q
V
S
G
S
L
A
P
C
I
G
F
L
R
S
G
G
P
I
P
M
P
C
C
N
G
V
R
S
L
N
A
A
A
R
T
T
P
D
R
Q
T
A
C
N
C
L
K
Q
A
A
G
S
I
P
N
L
N
L
N
N
A
A
G
L
P
G
A
C
G
V
S
I
P
Y
K
I
S
T
S
T
D
C
S
K
V
R
44
94.18
100%
-144
- C- -
M044
-
A:
[1-93]
I
T
C
G
Q
V
S
G
S
L
A
P
C
I
G
F
L
R
S
G
G
P
I
P
M
P
C
C
N
G
V
R
S
L
N
A
A
A
R
T
T
P
D
R
Q
T
A
C
N
C
L
K
Q
A
A
G
S
I
P
N
L
N
L
N
N
A
A
G
L
P
G
A
C
G
V
S
I
P
Y
K
I
S
T
S
T
D
C
S
K
V
R