@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-04 )
VDCKDVNSNLATCIPYLTGKDTAPPTTCCDGVKNLPKIAQTTADRRAACECVKAAASHYTINEKAASSLPKDCGAVINIPISKTTNCQQIN
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------..---....--..--.---10.......----.---20-.-----.---------------.----------------.-----------.---------------------..------------.---.30........40----------.........50..-..-...-.------60-----------.----------.-----------.------......--70.......--------------.80........90--------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------VD---CKDV--NS--N---LATCIPYLT----G---K--D-----T---------------A----------------P-----------P---------------------TT------------C---CDGVKNLPKIAQ-----------TTADRRAACECVK-AA-ASH-Y------T------------I----------N-----------E------KAASSL--PKDCGAVIN--------------IPISKTTNCQQIN--------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
94.98
48%
-91
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
---
C
G
Q
V
--
Q
G
--
N
---
L
A
Q
C
I
G
F
L
Q
----
K
---
G
--------
G
---------------
V
----------------
V
-----------
P
---------------------
P
S
------------
C
---
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
L
K
-
A
A
-
A
G
A
-
V
R-----
G
------------
I
----------
N
-----------
P
------
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
--------------
Y
K
I
S
T
S
T
N
C
N
S
I
N
--------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
93.05
44%
-103
- C2 -
1T12
-
NLTP1_TOBAC
A:
[2-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
---
C
G
Q
V
--
T
S
--
N
---
L
A
P
C
L
A
Y
L
R
----
N
---
T
--
G
--------------------------------------
P
-----------
L
---------------------
G
R
------------
C
---
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
L
K
-
S
A
-
A
G
A
-
I
S-----
G
------------
I
----------
N
-----------
L
------
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
--------------
Y
K
I
S
P
S
T
D
C
S
K
V
Q
--------------------------------------------------------------------------------------------------------------------------------------
32
SP3
91.02
43%
-87
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
S
---
C
G
Q
V
--
A
S
--
A
---
I
A
P
C
I
S
Y
A
R
----
G
---
Q
--
G
-----
S
---------------
G
----------------
P
-----------
S
---------------------
A
G
------------
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
-
N
A
-
A
A
G
-
V
S-----
G
------------
L
----------
N
-----------
A
------
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
--------------
Y
T
I
S
T
S
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
88.82
42%
-98
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[2-92]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
---
C
G
Q
V
--
S
S
--
S
---
L
A
P
C
I
P
Y
V
R
----
G
---
G
--------
G
---------------
A
----------------
V
-----------
P
---------------------
P
A
------------
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
K
-
Q
L
-
S
A
S
-
V
P-----
G
------------
V
----------
N
-----------
P
------
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
--------------
Y
K
I
S
A
S
T
N
C
A
T
V
K
--------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
88.53
38%
-93
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
---
C
G
H
V
--
D
S
--
L
---
V
R
P
C
L
S
Y
V
Q
----
G
---
G
--------
P
---------------
G
----------------
P
-----------
S
---------------------
G
Q
------------
C
---
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
L
K
-
G
I
-
A
R
G
-
I
H-----
N
------------
L
----------
N
-----------
E
------
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
--------------
Y
T
I
S
L
N
I
D
C
S
R
V
---------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
88.44
44%
-78
- C2 -
1AFH
-
NLTP_MAIZE
A:
[2-93]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
---
C
G
Q
V
--
A
S
--
A
---
I
A
P
C
I
S
Y
A
R
----
G
---
Q
--
G
-----
S
---------------
G
----------------
P
-----------
S
---------------------
A
G
------------
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
-
N
A
-
A
A
G
-
V
S-----
G
------------
L
----------
N
-----------
A
------
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
--------------
Y
T
I
S
T
S
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
63.41
22%
-96
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
---
C
Y
Q
Q
--
M
E
--
E
A
EM
L
N
H
C
G
M
Y
L
M
----
K
---
N
--
L
-----
G
---------------
E
----------------
R
-----------
S
---------------------
Q
V
SPR
M
R
E
E
D
H
K
Q
L
C
---
C
M
Q
L
K
N
L
D
-------------------
E
K
C
M
C
P
A
I
M
-
M
M
-
L
N
E
-
P
------
M
------------
W
----------
I
-----------
R
MR
D
Q
V
M
S
M
A
H
N
L
--
P
I
E
C
N
L
---------------------
M
S
Q
P
C
Q
M
----------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
60.79
21%
-103
- C2 -
1SM7
-
?
A:
[14-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
---
L
R
A
C
Q
Q
W
I
R
----
Q
---
Q
--
L
-----
A
G
S
P
F
S
E
NQWGPQQGP
S
----------------
L
-----------
R
---------------------
E
Q
------------
C
---
C
N
E
L
Y
Q
-----------------
E
--
D
Q
V
C
V
C
P
T
L
K
-
Q
A
-
A
K
S
-
V
RVQ---
G
Q-----------
H
GPFQST
R
---
I
-----------
Y
------
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
60.39
18%
-88
- C2 -
1W2Q
-
CONG_ARAHY
A:
[23-114]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--
N
---
L
K
P
C
E
Q
H
I
M
----
Q
---
R
--
I
MGEQE
Q
Y--------------
D
----------------
S
YDIRSTR
S
S
D
Q
Q
---------------------
Q
R
------------
C
---
C
D
E
L
N
E
M
E
---------------
N
--
T
Q
G
C
M
C
E
A
L
Q
-
Q
I
-
M
E
N
-
Q
CD----
R
------------
L
QDRQMV
Q
---
Q
F
----------
K
------
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
59.65
24%
-66
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AI
D
L
---
C
G
M
S
--
Q
D
--
E
---
L
N
E
C
K
P
A
V
S
----
K
---
E
--
N
-----
P
---------------
T
----------------
S
-----------
P
S--------------------
Q
P
------------
C
---
C
T
A
L
Q
H
-------------------
A
D
F
A
C
L
C
G
Y
K
N
S
P
W
-
L
G
S
-
F
------
G
------------
V
----------
D
-----------
P
------
E
L
A
S
A
L
--
P
K
Q
C
G
--------------------
L
A
N
A
P
T
C
------------------------------------------------------------------------------------------------------------------------------------------
9
Fugue
59.43
23%
-63
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
----------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
---
C
R
Q
E
VQ
R
K
--
D
---
L
S
S
C
E
R
Y
L
R
----
Q
---
S
--
S
-----
S
---------------
R
----------------
R
-----------
S
T
GEEVLRMPGDENQQQESQQL
Q
Q
------------
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
-
Y
I
-
A
E
D
-
Q
------
I
------------
Q
----------
Q
G
QLHGEE
S
E
R
V
A
------
Q
R
A
G
E
I
--
V
S
S
C
G
--
V
R
--------------
C
M
R
Q
T
R
T
N
-------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
59.21
23%
-100
- C2 -
1S6D
-
2SS8_HELAN
A:
[19-97]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
--
M
---
L
N
H
C
G
M
Y
L
M
----
K
---
N
--
L
-----
G
ERSQVSPR
M
R
E
E
---
D
----------------
H
-----------
K
---------------------
Q
L
------------
C
---
C
M
Q
L
K
N
L
D
-------------------
E
K
C
M
C
P
A
I
M
-
M
M
-
L
N
E
-
P
MW----
I
RMR
D
--------
Q
----------
V
-----------
M
------
S
M
A
H
N
L
--
P
I
E
C
N
L
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
58.48
23%
-84
- C2 -
1PSY
-
2SS_RICCO
A:
[25-121]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
D
---
L
S
S
C
E
R
Y
L
R
----
Q
---
S
S
S
R
-----
R
S
T
G------------
E
EVLRMPGDENQQQESQ
Q
-----------
L
---------------------
Q
Q
------------
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
-
Y
I
-
A
E
D
-
Q
I
Q
Q
---
G
Q-----------
L
HGEE
S
E
R
---
V
-----------
A
------
Q
R
A
G
E
I
--
V
S
S
C
G
V
--
R
--------------
C
M
R
Q
-----------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
58.45
19%
-100
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-110]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
---
L
P
S
C
R
W
Y
V
T
S
R
TC
G
---
I
--
G
-----
P
---------------
R
----------------
L
P
W
P
E
L
------
K
---------------------
R
R
------------
C
---
C
R
E
L
A
D
---
I
----------------
P
A
Y
C
R
C
T
A
L
S
-
I
L
-
M
D
G
-
A
I
P
P
G
--
P
------------
D
AQL
E
G
R
L
---
E
D
LPGCP
R
E
V
Q
-
R
------
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
--------------
S
--------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
57.45
18%
-100
* C2 *
1HSS
-
IAA1_WHEAT
A:
[15-103]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
--
A
---
L
P
A
C
R
P
L
L
R
----
L
---
Q
--
C
-----
N
GSQ------------
V
P
E
A
-------------
V
-----------
L
---------------------
R
D
------------
C
---
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
-
S
M
-
L
D
S
-
M
Y
K
E
H----------------GAFPRCR
R
E
V
V
-----------
K
------
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
54.87
20%
-72
- C2 -
2LVF
-
?
A:
[16-101]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
M
---
L
S
H
C
R
M
Y
M
R
----
Q
Q
M
E
E
--
S
-----
T
---------------
Y
----------------
Q
TMPRRGMEP
H
-
M
---------------------
S
E
------------
C
---
C
E
Q
L
E
G
M
-------------------
D
E
S
C
R
C
E
G
L
R
-
M
M
-
M
R
M
M
Q
Q
K
E---
M
Q
-----------
P
R
G
E
Q
M
R
R
---
M
-----------
M
------
R
L
A
E
N
I
--
P
S
R
C
N
L
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
SP3
53.56
10%
-89
- C2 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
---
D
N
H
V
--
A
A
A
G
S
---
V
V
D
A
L
R
A
V
R
-----------
N
-----
A
---------------
A
----------------
P
-----------
D
---------------------
L
P
------------
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
-
S
R
-
A
P
T
-
V
M
L
E
S
S
G
G
------------
L
----------
S
-----------
L
------
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
-----------------
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M------------------------------------------------------------------------------------------------------------------------------
36
SP3
52.36
10%
-89
- C2 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
---
D
N
H
V
--
A
A
A
G
S
---
V
V
D
A
L
R
A
V
R
-----------
N
-----
A
---------------
A
----------------
P
-----------
D
---------------------
L
P
------------
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
-
S
R
-
A
P
T
-
V
M
L
E
S
S
G
G
------------
L
----------
S
-----------
L
------
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
-----------------
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
50.94
23%
-66
- C2 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
---
C
G
M
S
--
Q
D
--
E
---
L
N
E
C
K
P
A
V
S
----
K
---
E
--
N
-----
P
T--------------
S
----------------
P
-----------
S
---------------------
Q
P
------------
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
-
S
P
W
L
G
S
-
F
------
G
------------
V
----------
D
-----------
P
------
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
--------------
P
--------------------------------------------------------------------------------------------------------------------------------------------------
41
SP3
49.72
9%
-61
- C2 -
1A0P
-
?
?:
[3-292]
-------------------------------------------------------------------------------------------------------------------------------------------------------Q
D
L
A
R
I
E
Q
F
L
D
A
L
W
L
E
KN
L
A
E
N
T
L
N
A
Y
--
R
R
--
D
---
L
S
M
M
V
E
W
L
H
----
H
---
R
--
G
-----
L
---------------
T
----------------
L
-----------
A
---------------------
T
A
------------
Q
---
S
D
D
L
Q
A
L
L
A
E
R
L
-----------
S
S
A
R
L
L
S
A
V
R
R
L
F
-
Q
Y
-
L
Y
R
-
E
------
K
FREDDPSAHLKD
L
----------
S
-----------
E
------
A
Q
V
E
R
L
--
L
Q
A
P
L
I
D
Q
P
L
E
L
R
D
K
A
M
L
E
V
L
Y
A
T
G
L
R
V
S
-
E
L
V
G
L
T
MSDISLRQG
V
V
R
V
I
G
KGNK
E
R
L
V
P
LG
E
E
A
V
Y
W
L
E
T
Y
L
E
HG
R
P
W
L
L
N
GVSIDVLFPSQRAQQMT
R
Q
T
F
W
H
R
I
K
H
Y
A
V
L
A
GIDSEKLS
P
H
V
L
R
H
A
F
A
T
H
L
L
N
HGADLRVVQMLLSDLS
T
T
Q
I
Y
T
H
V
A
T
E
R
L
R
Q
L
H
Q
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
VDCKDVNSNLATCIPYLTGKDTAPPTTCCDGVKNLPKIAQTTADRRAACECVKAAASHYTINEKAASSLPKDCGAVINIPISKTTNCQQIN
45
96.21
100%
-119
- C- -
M045
-
A:
[1-149]
V
D
C
K
D
V
N
S
N
L
A
T
C
I
P
Y
L
T
G
K
D
T
A
P
P
T
T
C
C
D
G
V
K
N
L
P
K
I
A
Q
T
T
A
D
R
R
A
A
C
E
C
V
K
A
A
A
S
H
Y
T
I
N
E
K
A
A
S
S
L
P
K
D
C
G
A
V
I
N
I
P
I
S
K
T
T
N
C
Q
Q
I
N
44
94.86
100%
-114
- C- -
M044
-
A:
[1-149]
V
D
C
K
D
V
N
S
N
L
A
T
C
I
P
Y
L
T
G
K
D
T
A
P
P
T
T
C
C
D
G
V
K
N
L
P
K
I
A
Q
T
T
A
D
R
R
A
A
C
E
C
V
K
A
A
A
S
H
Y
T
I
N
E
K
A
A
S
S
L
P
K
D
C
G
A
V
I
N
I
P
I
S
K
T
T
N
C
Q
Q
I
N
46
89.01
100%
-101
- C- -
M046
-
A:
[1-110]
V
D
C
K
D
V
N
S
N
L
A
T
C
I
P
Y
L
T
G
K
D
T
A
P
P
T
T
C
C
D
G
V
K
N
L
P
K
I
A
Q
T
T
A
D
R
R
A
A
C
E
C
V
K
A
A
A
S
H
Y
T
I
N
E
K
A
A
S
S
L
P
K
D
C
G
A
V
I
N
I
P
I
S
K
T
T
N
C
Q
Q
I
N
48
88.30
100%
-102
- C- -
M048
-
A:
[1-282]
V
D
C
K
D
V
N
S
N
L
A
T
C
I
P
Y
L
T
G
K
D
T
A
P
P
T
T
C
C
D
G
V
K
N
L
P
K
I
A
Q
T
T
A
D
R
R
A
A
C
E
C
V
K
A
A
A
S
H
Y
T
I
N
E
K
A
A
S
S
L
P
K
D
C
G
A
V
I
N
I
P
I
S
K
T
T
N
C
Q
Q
I
N