@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-04 )
ITCGQVSSSLAPCVNFLKSGGAPSPQCCNGLGGMVNQAKSTADKQAACNCLKTAAKNMPGLNPANAESLPSKCKVNIPYKISFSTNCNSIK
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------......--..--.10.......----.----20.-------------.------------.----------.----.----------------------..---..30........-----------40........50...-...-.-------.-------60--------..----------.----------......--70........80........90----------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ITCGQV--SS--SLAPCVNFLK----S----G-G-------------A------------P----------S----P----------------------QC---CNGLGGMVNQAK-----------STADKQAACNCLKTA-AKN-M-------P-------G---------LN----------P----------ANAESL--PSKCKVNIPYKISFSTNCNSIK----------
22
HHSearch
94.36
57%
-112
- C1 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
--
Q
G
--
N
L
A
Q
C
I
G
F
L
Q
----
K
----
G
-
G
-------------
V
------------
V
----------
P
----
P
----------------------
S
C
---
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
L
K
A
A
-
A
G
A
-
V
-------
R
-------
G
---------
I
N
----------
P
----------
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
I
S
T
S
T
N
C
N
S
I
N
----------
19
HHSearch
92.38
60%
-103
- C1 -
2ALG
2
NLTP1_PRUPE
A:
[2-92]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
G
Q
V
--
S
S
--
S
L
A
P
C
I
P
Y
V
R
----
G
----
G
-
G
-------------
A
------------
V
----------
P
----
P
----------------------
A
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
K
Q
L
-
S
A
S
-
V
-------
P
-------
G
---------
V
N
----------
P
----------
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
I
S
A
S
T
N
C
A
T
V
K
----------
20
HHSearch
92.23
53%
-119
- C1 -
1T12
-
NLTP1_TOBAC
A:
[2-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
G
Q
V
--
T
S
--
N
L
A
P
C
L
A
Y
L
R
----
N
----
T
-
G
--------------------------
P
----------
L
----
G
----------------------
R
C
---
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
L
K
S
A
-
A
G
A
-
I
-------
S
-------
G
---------
I
N
----------
L
----------
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
Y
K
I
S
P
S
T
D
C
S
K
V
Q
----------
24
HHSearch
86.66
47%
-110
- C1 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
--
D
S
--
L
V
R
P
C
L
S
Y
V
Q
----
G
----
G
-
P
-------------
G
------------
P
----------
S
----
G
----------------------
Q
C
---
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
L
K
G
I
-
A
R
G
-
I
-------
H
-------
N
---------
L
N
----------
E
----------
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
I
S
L
N
I
D
C
S
R
V
-----------
9
SP3
85.53
52%
-98
- C1 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
S
C
G
Q
V
--
A
S
--
A
I
A
P
C
I
S
Y
A
R
----
G
----
Q
-
G
-------------
S
G-----------
P
----------
S
----
A
----------------------
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
G
-
V
-------
S
-------
G
---------
L
N
----------
A
----------
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
----------
21
HHSearch
81.82
53%
-87
- C1 -
1AFH
-
NLTP_MAIZE
A:
[2-93]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
C
G
Q
V
--
A
S
--
A
I
A
P
C
I
S
Y
A
R
----
G
----
Q
-
G
-------------
S
G-----------
P
----------
S
----
A
----------------------
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
G
-
V
-------
S
-------
G
---------
L
N
----------
A
----------
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
----------
35
HHSearch
64.12
32%
-105
- C1 -
1SM7
-
?
A:
[13-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
H
L
R
A
C
Q
Q
W
I
R
----
Q
QLA-
G
-
S
P
F
S
E
NQWGPQQGP
S
------------
L
----------
R
----
E
----------------------
Q
C
---
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
K
Q
A
-
A
K
S
-
V
-------
R
VQ-----
G
Q--------
H
G
PFQST
R
I
---
Y
----------
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
-----------------------
38
HHSearch
62.30
23%
-121
* C1 *
1HSS
-
IAA1_WHEAT
A:
[15-106]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
--
A
L
P
A
C
R
P
L
L
R
----
L
Q
C
N
-
G
-
S
-------------
Q
VP
E
A
--------
V
----------
L
----
R
----------------------
D
C
---
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
S
-
M
-------
Y
K
E
H-----GAFPRCR
R
E
V
V
----------
K
----------
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
V
D
---------------------
16
SP3
57.90
17%
-109
- C1 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
------------------------------------------------------------------------------------------------------------------------------------------------------------------MCYPGQA
F
Q
------
V
P
--
A
L
P
A
C
R
P
L
L
R
----
L
Q
C
N
-
G
-
S
-------------
Q
------------
V
----------
P
E
A
V
L
R
----------------------
D
C
---
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
S
-
M
Y
K
E
HGAF
P
-------
R
---------
C
R
R
E
V
V
------
K
----------
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
--
V
D
A
S
G
D
G
A
Y
V
C
K
D
V
A
A
YPDA-
39
HHSearch
57.33
24%
-89
- C1 -
1W2Q
-
CONG_ARAHY
A:
[22-114]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
--
N
L
K
P
C
E
Q
H
I
M
----
Q
R
I
M-
G
-
E
QEQ----------
Y
DSYDIRSTR
S
S
D
Q
----------
Q
----
Q
----------------------
R
C
---
C
D
E
L
N
E
M
E
----------------
N
-
T
Q
G
C
M
C
E
A
L
Q
Q
I
-
M
E
N
-
Q
-------
C
DRLQ---
D
---------
R
Q
MV
Q
Q
F
-----
K
----------
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
-----------------------
12
SP3
56.03
16%
-102
- C1 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
--
A
A
A
G
S
V
V
D
A
L
R
A
V
R
----
N
----
A
---------------
A
------------
P
----------
D
----
L
----------------------
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
T
-
V
-------
M
L
E
S
S
G
--
G
---------
L
S
----------
L
----------
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
---
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M--
17
SP3
55.99
16%
-99
- C1 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
--
A
A
A
G
S
V
V
D
A
L
R
A
V
R
----
N
----
A
---------------
A
------------
P
----------
D
----
L
----------------------
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
T
-
V
M
L
E
S
S
--
G
-------
G
---------
L
S
----------
L
----------
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
---
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M--
33
HHSearch
55.79
19%
-105
- C1 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
L
P
S
C
R
W
Y
V
T
S
R
TC
G
----
I
-
G
-------------
P
R-----------
L
P
W
P
E
L
-----
K
----
R
----------------------
R
C
---
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
S
I
L
-
M
D
G
-
A
-------
I
P
P
G
PDAQ
L
E
G
R
------
L
E
D
LPGCP
R
E
V
Q
R
----------
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
-----------------------
37
HHSearch
49.25
26%
-72
- C1 -
2LVF
-
?
A:
[16-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
M
L
S
H
C
R
M
Y
M
R
----
Q
Q
M
E
-
E
S
T
-------------
Y
------------
Q
TMPRRGMEP
H
M
----
S
----------------------
E
C
---
C
E
Q
L
E
G
M
-------------------
D
E
S
C
R
C
E
G
L
R
M
M
-
M
R
M
M
Q
Q
K
EM
Q
P
-
R
-------
G
E
Q
M
R
-----
R
M
----------
M
----------
R
L
A
E
N
I
--
P
S
R
C
N
L
S
-------------------------
25
HHSearch
44.59
25%
-66
- C1 -
2RKN
2
DIRL1_ARATH
A:
[4-75]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
C
G
M
S
--
Q
D
--
E
L
N
E
C
K
P
A
V
S
----
K
----
E
-
N
PT-----------
S
------------
P
----------
S
----
Q
----------------------
P
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
S
P
W
L
G
S
-
F
---------------
G
---------
V
D
----------
P
----------
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
----------------------
4
Fugue
43.87
22%
-51
- C1 -
1PSY
-
2SS_RICCO
A:
[1-125]
----------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
Q
E
VQ
R
K
--
D
L
S
S
C
E
R
Y
L
R
----
Q
----
S
-
S
-------------
S
------------
R
----------
R
----
S
T
GEEVLRMPGDENQQQESQQL
Q
Q
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
D
-
Q
-------
I
-------
Q
---------
Q
G
----------
Q
LHGEE
S
E
R
V
A
Q
R
A
G
E
I
--
V
S
S
C
--
G
V
R
C
M
R
Q
T
R
T
N
---------------
13
SP3
43.09
14%
-72
- C1 -
1O4U
-
?
A:
[1-273]
----------------------M
E
K
I
L
D
L
L
M
S
F
V
K
E
D
E
GKLDLASFPLRN
T
T
A
G
A
H
L
L
L
KT
E
N
V
V
A
S
G
I
E
V
S
R
M
F
L
E
K
M
G
L
L
S
K
F
NVEDG
E
Y
L
E
G
TGVI
G
E
I
E
G
N
T
Y
K
L
L
V
A
E
R
T
L
L
N
V
L
S
V
M
F
S
V
A
T
T
T
R
R
F
A
E
K
L
KH
A
K
I
A
A
T
RKILPGL
G
V
L
Q
K
I
A
V
V
H
G
GGDC
V
M
I
K
D
N
H
L
--
K
M
Y
G
S
A
E
R
A
V
Q
E
V
R
----
K
----
I
-
I
-------------
P
------------
F
----------
T
----
T
----------------------
K
I
E
V
E
V
E
N
L
E
D
A
L
R
A
V
E
A
GAD
I
V
M
L
D
NL
S
P
E
E
V
K
D
I
S
R
R
I
K
D
I
-
N
P
N
-
V
-------
I
V
E
V
S
G
--
G
---------
I
T
----------
E
----------
E
N
V
S
L
Y
---
D
F
E
T
V
D
V
---
I
S
S
S
R
L
T
L
Q
E
V
F
V
D
L
S
L
E
I
Q
R
2
Fugue
43.02
26%
-42
- C1 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AI
D
L
C
G
M
S
--
Q
D
--
E
L
N
E
C
K
P
A
V
S
----
K
----
E
-
N
PT-----------
S
------------
P
----------
S
----
Q
----------------------
P
C
---
C
T
A
L
-------------------
Q
H
A
D
F
A
C
L
C
G
Y
K
N
S
P
-
W
L
G
-
S
-------
F
-------
G
---------
V
D
----------
P
----------
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
------
P
T
C
--------------
31
HHSearch
42.98
17%
-80
- C1 -
1B1U
-
IAAT_ELECO
A:
[15-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
L
D
S
C
R
W
Y
V
S
----
T
R
T
CG
V
-
G
-------------
P
RLA
T
Q
E
------
M
----------
K
----
A
----------------------
R
C
---
C
R
Q
L
E
A
I
-------------------
P
A
Y
C
R
C
E
A
V
R
I
L
-
M
D
G
-
V
-------
V
T
PS----
G
Q
H
E
G
RLLQD
L
P
GCP
R
Q
V
Q
R
A
-
F
----------
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
H
----------------------
34
HHSearch
40.34
26%
-67
- C1 -
3OB4
-
?
A:
[427-485]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
----------
Q
----
E
----------------------
R
C
---
C
N
E
L
N
E
F
E
N
-----------------
N
Q
R
C
M
C
E
A
L
Q
Q
I
-
M
E
N
-
Q
S
DRL---
Q
-------
G
---------
R
Q
Q
E
Q
Q
F
-----
K
----------
R
E
L
R
N
L
--
P
Q
Q
C
G
L
R
A
P
-----------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ITCGQVSSSLAPCVNFLKSGGAPSPQCCNGLGGMVNQAKSTADKQAACNCLKTAAKNMPGLNPANAESLPSKCKVNIPYKISFSTNCNSIK
41
98.27
100%
-118
- C- -
M041
-
A:
[1-93]
I
T
C
G
Q
V
S
S
S
L
A
P
C
V
N
F
L
K
S
G
G
A
P
S
P
Q
C
C
N
G
L
G
G
M
V
N
Q
A
K
S
T
A
D
K
Q
A
A
C
N
C
L
K
T
A
A
K
N
M
P
G
L
N
P
A
N
A
E
S
L
P
S
K
C
K
V
N
I
P
Y
K
I
S
F
S
T
N
C
N
S
I
K
40
97.82
100%
-114
- C- -
M040
-
A:
[1-93]
I
T
C
G
Q
V
S
S
S
L
A
P
C
V
N
F
L
K
S
G
G
A
P
S
P
Q
C
C
N
G
L
G
G
M
V
N
Q
A
K
S
T
A
D
K
Q
A
A
C
N
C
L
K
T
A
A
K
N
M
P
G
L
N
P
A
N
A
E
S
L
P
S
K
C
K
V
N
I
P
Y
K
I
S
F
S
T
N
C
N
S
I
K
44
94.95
100%
-108
- C- -
M044
-
A:
[1-93]
I
T
C
G
Q
V
S
S
S
L
A
P
C
V
N
F
L
K
S
G
G
A
P
S
P
Q
C
C
N
G
L
G
G
M
V
N
Q
A
K
S
T
A
D
K
Q
A
A
C
N
C
L
K
T
A
A
K
N
M
P
G
L
N
P
A
N
A
E
S
L
P
S
K
C
K
V
N
I
P
Y
K
I
S
F
S
T
N
C
N
S
I
K