@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-04 )
ITCGQVASNISPCVTYVKSGGAVPAPCCSGIRNLNGMAKTTADRQATCNCLKQAAGGIKGLNPNLAAGLPGKCGVSVPYKISTTTNCAAVK
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------...--...--..--.--10.......------------------.----20--.----------------------.-------------------.-----.----.---....30........-----------40........50...---....-------.-------60--------.-------.----------.......--70........80--.........90---------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ITC--GQV--AS--N--ISPCVTYVK------------------S----G---G----------------------A-------------------V-----P----A---PCCSGIRNLNGMAK-----------TTADRQATCNCLKQA---AGGI-------K-------G---------L-------N----------PNLAAGL--PGKCGVSVPYK---ISTTTNCAAVK---------
10
HHSearch
96.73
67%
-125
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[2-92]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
--
G
Q
V
--
S
S
--
S
--
L
A
P
C
I
P
Y
V
R
------------------
G
----
G
---
G
----------------------
A
-------------------
V
-----
P
----
P
---
A
C
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
K
Q
L
---
S
A
S
V
-------
P
-------
G
---------
V
-------
N
----------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
---
I
S
A
S
T
N
C
A
T
V
K
---------
27
SP3
90.99
59%
-120
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
S
C
--
G
Q
V
--
A
S
--
A
--
I
A
P
C
I
S
Y
A
R
------------------
G
----
Q
---
G
----------------------
S
G------------------
P
-----
S
----
A
---
G
C
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
---
A
A
G
V
-------
S
-------
G
---------
L
-------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
---
I
S
T
S
T
D
C
S
R
V
N
---------
15
HHSearch
89.15
46%
-131
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
--
G
H
V
--
D
S
--
L
--
V
R
P
C
L
S
Y
V
Q
------------------
G
----
G
---
P
----------------------
G
-------------------
P
-----
S
----
G
---
Q
C
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
L
K
G
I
---
A
R
G
I
-------
H
-------
N
---------
L
-------
N
----------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
---
I
S
L
N
I
D
C
S
R
V
----------
13
HHSearch
88.46
53%
-111
- C3 -
1T12
-
NLTP1_TOBAC
A:
[2-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
--
G
Q
V
--
T
S
--
N
--
L
A
P
C
L
A
Y
L
R
------------------
N
----
T
---
G
------------------------------------------
P
-----
L
----
G
---
R
C
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
L
K
S
A
---
A
G
A
I
-------
S
-------
G
---------
I
-------
N
----------
L
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
Y
K
---
I
S
P
S
T
D
C
S
K
V
Q
---------
12
HHSearch
87.37
54%
-119
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
--
G
Q
V
--
Q
G
--
N
--
L
A
Q
C
I
G
F
L
Q
------------------
K
----
G
---
G
----------------------
V
-------------------
V
-----
P
----
P
---
S
C
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
L
K
A
A
---
A
G
A
V
-------
R
-------
G
---------
I
-------
N
----------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
---
I
S
T
S
T
N
C
N
S
I
N
---------
11
HHSearch
85.08
59%
-105
- C3 -
1AFH
-
NLTP_MAIZE
A:
[2-93]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
C
--
G
Q
V
--
A
S
--
A
--
I
A
P
C
I
S
Y
A
R
------------------
G
----
Q
---
G
----------------------
S
G------------------
P
-----
S
----
A
---
G
C
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
---
A
A
G
V
-------
S
-------
G
---------
L
-------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
---
I
S
T
S
T
D
C
S
R
V
N
---------
25
HHSearch
64.03
25%
-136
- C3 -
1SM7
-
?
A:
[13-101]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
H
--
L
R
A
C
Q
Q
W
I
R
------------------
Q
QLA-
G
---
S
----------------------
P
F
S
E
NQWGPQQGPS------
L
-----
R
----
E
---
Q
C
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
K
Q
A
---
A
K
S
V
-------
R
VQ-----
G
Q--------
H
-------
G
PFQST
R
I
---
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
-------------------------
22
HHSearch
54.67
24%
-113
- C3 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
--
L
P
S
C
R
W
Y
V
T
------------------
S
R
TCG
I
---
G
----------------------
P
R------------------
L
P
W
P
E
L
K
----
R
---
R
C
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
S
I
L
---
M
D
G
A
-------
I
P
P
G
PDAQ
L
E
G
R
------
L
-------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
-------------------------
32
SP3
52.34
17%
-115
* C3 *
1HSS
-
IAA1_WHEAT
A:
[5-124]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
C
YP
G
Q
A
FQ
V
P
--
A
--
L
P
A
C
R
P
L
L
R
------------------
L
Q
C
N
-
G
---
S
----------------------
Q
-------------------
V
-----
P
E
A
V
L
R
---
D
C
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
S
M
---
L
D
S
M
Y
K
E
HGAF
P
-------
R
---------
C
-------
R
R
E
V
V
------
K
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
-----
V
D
A
S
G
D
G
A
Y
V
C
K
D
V
A
A
YPDA
2
Fugue
50.96
27%
-62
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AI
D
L
C
--
G
M
S
--
Q
D
--
E
--
L
N
E
C
K
P
A
V
S
------------------
K
----
E
---
N
----------------------
P
-------------------
T
-----
S
PS--
Q
---
P
C
C
T
A
L
Q
H
-------------------
A
D
F
A
C
L
C
G
Y
K
N
S
P
---
W
L
G
S
-------
F
-------
G
---------
V
-------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
---------
P
T
C
-------------
16
HHSearch
49.25
26%
-74
- C3 -
2RKN
2
DIRL1_ARATH
A:
[4-75]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
C
--
G
M
S
--
Q
D
--
E
--
L
N
E
C
K
P
A
V
S
------------------
K
----
E
---
N
PT--------------------
S
-------------------
P
-----
S
----
Q
---
P
C
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
S
P
---
W
L
G
S
-------
F
-------
G
---------
V
-------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
------------------------
21
HHSearch
44.99
19%
-104
- C3 -
1B1U
-
IAAT_ELECO
A:
[15-109]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
--
L
D
S
C
R
W
Y
V
S
------------------
T
R
T
CG
V
---
G
----------------------
P
RLA
T
Q
E
-------------
M
-----
K
----
A
---
R
C
C
R
Q
L
E
A
I
-------------------
P
A
Y
C
R
C
E
A
V
R
I
L
---
M
D
G
V
-------
V
T
PS----
G
Q
H
E
G
RLLQD
L
-------
P
GCP
R
Q
V
Q
R
A
-
F
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
H
------------------------
7
Fugue
44.49
20%
-32
- C3 -
1PSY
-
2SS_RICCO
A:
[1-125]
----------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
--
R
Q
E
--
V
Q
--
R
KD
L
S
S
C
E
R
Y
L
R
------------------
Q
----
S
---
S
S
R
R
S
T
GEEVLRMPGDENQQQES
Q
-------------------
Q
-----
L
----
Q
---
Q
C
C
N
Q
V
K
Q
V
R
D
E
C
Q
-----------
C
E
A
I
K
Y
I
A
E
D
Q
I
Q
Q
G
QL-
H
G
E
E
-------
S
-------
E
---------
R
-------
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
R
--
C
M
---
R
Q
T
R
T
N
--------------
23
HHSearch
44.11
23%
-64
- C3 -
1PSY
-
2SS_RICCO
A:
[25-122]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
D
--
L
S
S
C
E
R
Y
L
R
------------------
Q
----
S
S
S
R
R
----------------------
S
T
GEEVLRMPGDENQQQESQ
Q
-----
L
----
Q
---
Q
C
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
---
A
E
D
Q
-------
I
Q
Q
-----
G
Q--------
L
HGEE
S
E
R
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
--
R
C
M
---
R
Q
T
-----------------
31
SP3
43.52
16%
-106
- C3 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
--
N
H
V
--
A
A
A
G
S
--
V
V
D
A
L
R
A
V
R
------------------
N
----
A
---
A
----------------------
P
-------------------
D
-----
L
----
P
C
E
V
E
V
D
S
-
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
---
A
P
T
V
-------
M
L
E
S
S
G
--
G
---------
L
-------
S
----------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
------
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M-
33
SP3
42.32
16%
-102
- C3 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
--
N
H
V
--
A
A
A
G
S
--
V
V
D
A
L
R
A
V
R
------------------
N
----
A
---
A
----------------------
P
-------------------
D
-----
L
----
P
C
E
V
E
V
D
S
-
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
---
A
P
T
V
M
L
E
S
S
--
G
-------
G
---------
L
-------
S
----------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
------
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M-
24
HHSearch
40.32
22%
-67
- C3 -
3OB4
-
?
A:
[427-485]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
-----
Q
----
E
---
R
C
C
N
E
L
N
E
F
E
N
-----------------
N
Q
R
C
M
C
E
A
L
Q
Q
I
---
M
E
N
Q
S
DRL---
Q
-------
G
---------
R
-------
Q
Q
E
Q
Q
F
-----
K
R
E
L
R
N
L
--
P
Q
Q
C
G
L
R
A
P
-------------------------
6
Fugue
40.02
12%
-55
- C3 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
------------------------------------------------------------------------------------------------------------------------------------------------------------GPMRRERGRQGDS
S
S
C
--
E
R
Q
--
V
D
R
V
N
--
L
K
P
C
E
Q
H
I
M
Q
R
I
MGEQEQYDSYDIRST
R
----
S
---
S
----------------------
D
-------------------
Q
-----
Q
----
Q
---
R
C
C
D
E
L
N
E
M
E
N
T
Q
G
-----------
C
M
C
E
A
L
Q
Q
I
M
E
N
Q
C
D
RLQ
D
R
Q
M
-------
V
-------
Q
---------
Q
-------
F
----------
K
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
Q
R
CDL
D
V
S
G
G
R
C
S
------------
18
HHSearch
39.10
26%
-92
- C3 -
1N89
1
NLT2G_WHEAT
A:
[4-65]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
--
Q
--
L
A
V
C
A
S
A
I
L
------------------
S
----
G
---
A
----------------------
K
-------------------
P
-----
S
----
G
---
E
C
C
G
N
L
R
A
----------------------
Q
Q
G
C
F
C
Q
Y
A
K
---
D
P
T
Y
G
------
Q
-------
Y
---------
I
-------
R
----------
S
P
H
A
R
D
T
--
L
T
S
C
G
L
A
V
P
-------------------------
4
Fugue
37.64
26%
-83
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
----
N
--
A
G
--
Q
--
L
T
V
C
T
G
A
I
A
------------------
G
----
G
---
A
----------------------
R
-------------------
P
-----
T
----
A
---
A
C
C
S
S
L
R
----------------------
A
Q
Q
G
C
F
C
Q
F
A
K
---
D
P
R
Y
-------
G
-------
R
Y--------
V
-------
N
----------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
----------
T
C
H
------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ITCGQVASNISPCVTYVKSGGAVPAPCCSGIRNLNGMAKTTADRQATCNCLKQAAGGIKGLNPNLAAGLPGKCGVSVPYKISTTTNCAAVK
39
98.84
100%
-140
- C- -
M039
-
A:
[1-117]
I
T
C
G
Q
V
A
S
N
I
S
P
C
V
T
Y
V
K
S
G
G
A
V
P
A
P
C
C
S
G
I
R
N
L
N
G
M
A
K
T
T
A
D
R
Q
A
T
C
N
C
L
K
Q
A
A
G
G
I
K
G
L
N
P
N
L
A
A
G
L
P
G
K
C
G
V
S
V
P
Y
K
I
S
T
T
T
N
C
A
A
V
K
37
96.67
100%
-129
- C- -
M037
-
A:
[1-93]
I
T
C
G
Q
V
A
S
N
I
S
P
C
V
T
Y
V
K
S
G
G
A
V
P
A
P
C
C
S
G
I
R
N
L
N
G
M
A
K
T
T
A
D
R
Q
A
T
C
N
C
L
K
Q
A
A
G
G
I
K
G
L
N
P
N
L
A
A
G
L
P
G
K
C
G
V
S
V
P
Y
K
I
S
T
T
T
N
C
A
A
V
K
43
93.72
100%
-135
- C- -
M043
-
A:
[1-91]
I
T
C
G
Q
V
A
S
N
I
S
P
C
V
T
Y
V
K
S
G
G
A
V
P
A
P
C
C
S
G
I
R
N
L
N
G
M
A
K
T
T
A
D
R
Q
A
T
C
N
C
L
K
Q
A
A
G
G
I
K
G
L
N
P
N
L
A
A
G
L
P
G
K
C
G
V
S
V
P
Y
K
I
S
T
T
T
N
C
A
A
V
K