@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-04 )
DAISCGQVTSGLVPCFGYLAAGGPVPPACCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKIH
Atome Classification :
(20 SA)
--------------------------------------------------------........--.10---........20---.-------------.----.----------------------.---------------.------------..----..30......-----..40........50..--...-.-----..60------.-------.---------.-------.----------.....70--........80........90..--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------DAISCGQV--TSG---LVPCFGYLA----A-------------G----G----------------------P---------------V------------PP----ACCNGVRGLN-----NAAKTTPDRQTACGCL--KGI-L-----AAN-------T-------R---------I-------N----------LNNANSL--PGKCGISIGYKITPNIDCSKIH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
SP3
93.53
50%
-133
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
A
---
I
A
P
C
I
S
Y
A
R
----
G
-------------
Q
----
G
----------------------
S
G--------------
P
------------
S
A
----
G
C
C
S
G
V
R
S
L
N
-----
N
A
A
R
T
T
A
D
R
R
A
A
C
N
C
L
--
K
N
A
-
A
-----
A
G
V
-------
S
-------
G
---------
L
-------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
92.81
57%
-132
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
---------------------------------------------------------
M
I
T
C
G
Q
V
--
S
S
S
---
L
A
P
C
I
P
Y
V
R
----
G
-------------
G
----
G
----------------------
A
---------------
V
------------
P
P
----
A
C
C
N
G
I
R
N
V
N
-----
N
L
A
R
T
T
P
D
R
Q
A
A
C
N
C
L
--
K
Q
L
-
S
-----
A
S
V
-------
P
-------
G
---------
V
-------
N
----------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
I
S
A
S
T
N
C
A
T
V
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
90.67
54%
-126
- C3 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
---------------------------------------------------------
A
I
T
C
G
Q
V
--
T
S
N
---
L
A
P
C
L
A
Y
L
R
----
N
-------------
T
----
G
--------------------------------------
P
------------
L
G
----
R
C
C
G
G
V
K
A
L
V
-----
N
S
A
R
T
T
E
D
R
Q
I
A
C
T
C
L
--
K
S
A
-
A
-----
G
A
I
-------
S
-------
G
---------
I
-------
N
----------
L
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
Y
K
I
S
P
S
T
D
C
S
K
V
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
90.04
48%
-137
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
----------------------------------------------------------
M
T
C
G
Q
V
--
Q
G
N
---
L
A
Q
C
I
G
F
L
Q
----
K
-------------
G
----
G
----------------------
V
---------------
V
------------
P
P
----
S
C
C
T
G
V
K
N
I
L
-----
N
S
S
R
T
T
A
D
R
R
A
V
C
S
C
L
--
K
A
A
-
A
-----
G
A
V
-------
R
-------
G
---------
I
-------
N
----------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
I
S
T
S
T
N
C
N
S
I
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
88.32
51%
-123
- C3 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
A
---
I
A
P
C
I
S
Y
A
R
----
G
-------------
Q
----
G
----------------------
S
G--------------
P
------------
S
A
----
G
C
C
S
G
V
R
S
L
N
-----
N
A
A
R
T
T
A
D
R
R
A
A
C
N
C
L
--
K
N
A
-
A
-----
A
G
V
-------
S
-------
G
---------
L
-------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
83.95
46%
-134
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
----------------------------------------------------------
I
D
C
G
H
V
--
D
S
L
---
V
R
P
C
L
S
Y
V
Q
----
G
-------------
G
----
P
----------------------
G
---------------
P
------------
S
G
----
Q
C
C
D
G
V
K
N
L
H
-----
N
Q
A
R
S
Q
S
D
R
Q
S
A
C
N
C
L
--
K
G
I
-
A
-----
R
G
I
-------
H
-------
N
---------
L
-------
N
----------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
I
S
L
N
I
D
C
S
R
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
61.54
23%
-161
* C3 *
1HSS
-
IAA1_WHEAT
A:
[15-105]
-------------------------------------------------------------------
P
A
---
L
P
A
C
R
P
L
L
R
----
L
Q
C
N
----------
G
----
S
----------------------
Q
VP
E
A
-----------
V
------------
L
R
----
D
C
C
Q
Q
L
A
H
I
-------------
S
E
W
C
R
C
G
A
L
--
Y
S
M
-
L
-----
D
S
M
-------
Y
K
E
H-----GAFPRCR
R
E
V
-------
V
----------
K
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
SP3
60.42
20%
-152
- C3 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
---------------------------------------------------MCYPG
Q
A
F
Q
------
V
P
A
---
L
P
A
C
R
P
L
L
R
----
L
Q
C
N
----------
G
----
S
----------------------
Q
---------------
V
------------
P
E
A
V
L
R
D
C
C
Q
Q
L
A
H
I
-------------
S
E
W
C
R
C
G
A
L
--
Y
S
M
-
L
-----
D
S
M
Y
K
E
HGAF
P
-------
R
---------
C
-------
R
R
E
V
V
------
K
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
--
V
D
A
S
G
D
G
A
Y
V
C
K
D
V
A
A
YPDA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
59.84
24%
-154
- C3 -
1SM7
-
?
A:
[13-101]
-------------------------------------------------------------------
Q
H
---
L
R
A
C
Q
Q
W
I
R
----
Q
QLA----------
G
----
S
----------------------
P
F
S
E
NQWGPQQGPS--
L
------------
R
E
----
Q
C
C
N
E
L
Y
Q
E
-------------
D
Q
V
C
V
C
P
T
L
--
K
Q
A
-
A
-----
K
S
V
-------
R
VQ-----
G
Q--------
H
-------
G
PFQST
R
I
---
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
59.72
23%
-116
- C3 -
1PSY
-
2SS_RICCO
A:
[25-118]
-------------------------------------------------------------------
K
D
---
L
S
S
C
E
R
Y
L
R
----
Q
-------------
S
S
S
R
R
S
T
GE-------------------
E
VLRMPGDENQQQESQ
Q
------------
L
Q
----
Q
C
C
N
Q
V
K
Q
V
-------------
R
D
E
C
Q
C
E
A
I
--
K
Y
I
-
A
-----
E
D
Q
-------
I
Q
Q
G
----
Q
---------
L
HGEE
S
E
R
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
R
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
59.36
20%
-112
- C3 -
1W2Q
-
CONG_ARAHY
A:
[22-114]
------------------------------------------------------------------
R
V
N
---
L
K
P
C
E
Q
H
I
M
----
Q
R
I
M----------
G
----
E
QE--------------------
Q
Y--------------
D
SYDIRSTR
S
S
D
Q
Q
Q
----
R
C
C
D
E
L
N
E
M
E
----------
N
-
T
Q
G
C
M
C
E
A
L
--
Q
Q
I
-
M
-----
E
N
Q
-------
C
DRLQ---
D
---------
R
-------
Q
MV
Q
Q
F
-----
K
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
57.10
20%
-101
- C3 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
----------------------------------------------------------
D
L
C
G
M
S
--
Q
D
E
---
L
N
E
C
K
P
A
V
S
----
K
-------------
E
----
N
PT--------------------
S
---------------
P
------------
S
Q
----
P
C
C
T
A
L
Q
H
A
-------------
D
F
A
C
L
C
G
Y
K
--
N
S
P
-
W
-----
L
G
S
-------
F
-------
G
---------
V
-------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
56.59
24%
-41
- C3 -
1PSY
-
2SS_RICCO
A:
[1-125]
-------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
Q
E
VQ
R
K
D
---
L
S
S
C
E
R
Y
L
R
----
Q
-------------
S
----
S
S
R
R
S
T
GEEVLRMPGDENQQQES
Q
---------------
Q
------------
L
Q
----
Q
C
C
N
Q
V
K
Q
V
R
DEC
Q
C
E
A
I
K
Y
I
A
E
D
Q
I
Q
Q
G
Q
L
--
H
G
---------
E
E
-------
S
-------
E
---------
R
-------
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
R
C
M
R
Q
T
R
T
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
54.93
19%
-167
- C3 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
-------------------------------------------------------------------
N
P
---
L
P
S
C
R
W
Y
V
T
S
R
TC
G
-------------
I
----
G
----------------------
P
---------------
R
LP
W
P
E
L
------
K
R
----
R
C
C
R
E
L
A
D
I
-------------
P
A
Y
C
R
C
T
A
L
--
S
I
L
-
M
-----
D
G
A
-------
I
P
P
G
PDAQ
L
E
G
R
------
L
-------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
53.66
22%
-89
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------
A
I
D
L
C
G
M
S
--
Q
D
E
---
L
N
E
C
K
P
A
V
S
----
K
-------------
E
----
N
----------------------
P
---------------
T
------------
S
P
S
Q
--
P
C
C
T
A
L
Q
-------------
H
A
D
F
A
C
L
C
G
Y
K
--
N
S
P
-
W
-----
L
G
S
-------
F
-------
G
---------
V
-------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
------
N
A
P
T
C
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
51.58
18%
-71
- C3 -
1KZH
-
?
A:
[4-553]
S
L
F
K
Q
E
R
Q
K
Y
I
P
K
L
P
NILKKDFNN
I
S
L
V
Y
G
E
N
T
E
A
IQD
R
Q
A
L
K
E
F
F
KNTYG
L
P
I
I
S
F
T
E
G
E
S
S
L
--
S
F
S
---
K
A
L
N
I
G
I
I
L
----
S
-------------
G
----
G
----------------------
P
---------------
A
------------
P
-----
G
G
H
N
V
I
S
G
V
F
-----
D
A
I
K
K
F
N
P
N
S
K
L
F
G
F
K
--
G
G
P
-
L
-----
G
L
L
E
N
D
K
---
I
-------
E
---------
L
-------
T
----------
E
S
L
I
N
S
Y
--
R
N
T
G
G
F
D
I
V
S
S
G
R
T
K
I
E
T
E
E
H
Y
N
K
A
L
F
V
A
K
E
N
NLN
A
I
I
I
I
G
G
D
D
S
N
T
N
A
A
I
L
A
E
Y
F
K
K
N
GEN
I
Q
V
I
G
V
P
K
T
IDADLRNDHIEISFG
F
D
S
A
T
K
I
Y
S
E
L
I
G
N
L
C
R
D
A
M
S
T
K
K
Y
W
H
F
V
K
L
M
GRSAS
H
V
A
L
E
C
A
L
K
THPN
I
C
I
V
S
E
E
V
L
A
K
KKT
L
S
E
I
I
D
E
M
V
S
V
I
L
K
R
S
L
N
GDN
F
G
V
V
I
V
P
EGLIEFI
P
E
V
K
S
L
M
L
E
L
C
D
I
F
D
K
N
EGEFKGLNIEKMK
E
I
F
V
A
K
LS
D
Y
M
K
G
V
Y
L
S
LP
L
F
I
Q
F
E
L
I
K
S
I
L
E
RDPHGNFNVSRVP
T
E
K
L
F
I
E
M
I
Q
S
R
L
N
D
M
K
K
R
GEYK
G
S
F
T
P
V
D
H
F
F
G
YEGRSAFPS
N
F
D
S
D
Y
C
Y
S
L
G
Y
N
A
V
V
L
I
L
N
GLTGYMSCIKNLNLKPTD
W
I
A
G
G
V
P
LTML
M
N
M
E
E
R
YGEK
K
P
V
I
K
K
A
L
VDLEG
R
P
F
K
E
F
V
K
N
R
D
K
W
A
L
N
NL
Y
L
Y
P
G
P
VQYFGS
S
E
I
V
D
EIT
E
T
L
K
L
E
L
9
Fugue
50.76
21%
-94
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
--
M
E
E
A
EM
L
N
H
C
G
M
Y
L
M
----
K
NLGERSQVSPR
M
R
E
----
E
----------------------
D
---------------
H
------------
K
Q
----
L
C
C
M
Q
L
K
N
L
D
-----
E
K
C
M
--------
C
P
A
I
--
M
M
M
-
L
N
EPMW
I
R
M
-------
R
-------
D
---------
Q
-------
V
----------
M
S
M
A
H
N
L
--
P
I
E
C
N
L
M
-------
S
Q
P
C
Q
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
50.04
21%
-91
- C3 -
2LVF
-
?
A:
[16-101]
-------------------------------------------------------------------
Q
M
---
L
S
H
C
R
M
Y
M
R
----
Q
Q
M
E
----------
E
----
S
----------------------
T
---------------
Y
QTMPRRGMEP
H
-
M
S
----
E
C
C
E
Q
L
E
G
M
-------------
D
E
S
C
R
C
E
G
L
--
R
M
M
-
M
-----
R
M
M
-------
Q
Q
K
EM---
Q
---------
P
R
G
E
Q
M
R
R
M
----------
M
R
L
A
E
N
I
--
P
S
R
C
N
L
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
SP3
46.73
22%
-89
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------
A
G
C
--
N
--
A
G
Q
---
L
T
V
C
T
G
A
I
A
----
G
-------------
G
----
A
----------------------
R
---------------
P
------------
T
A
----
A
C
C
S
S
L
R
A
----------------
Q
Q
G
C
F
C
Q
--
F
A
K
-
D
-----
P
R
Y
-------
G
-------
R
Y--------
V
-------
N
----------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
-------
T
C
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
46.41
33%
-98
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[6-66]
-------------------------------------------------------------------
G
Q
---
L
T
V
C
T
G
A
I
A
----
G
-------------
G
----
A
----------------------
R
---------------
P
------------
T
A
----
A
C
C
S
S
L
R
A
----------------
Q
Q
G
C
F
C
Q
F
A
K
D
P
R
Y
-----
G
R
----------------
Y
---------
V
-------
N
----------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90..
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
DAISCGQVTSGLVPCFGYLAAGGPVPPACCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKIH
47
96.60
100%
-132
- C- -
M047
-
A:
[1-185]
D
A
I
S
C
G
Q
V
T
S
G
L
V
P
C
F
G
Y
L
A
A
G
G
P
V
P
P
A
C
C
N
G
V
R
G
L
N
N
A
A
K
T
T
P
D
R
Q
T
A
C
G
C
L
K
G
I
L
A
A
N
T
R
I
N
L
N
N
A
N
S
L
P
G
K
C
G
I
S
I
G
Y
K
I
T
P
N
I
D
C
S
K
I
H
48
45.47
100%
-
- C- -
M048
-
A:
[1-185]
D
A
I
S
C
G
Q
V
T
S
G
L
V
P
C
F
G
Y
L
A
A
G
G
P
V
P
P
A
C
C
N
G
V
R
G
L
N
N
A
A
K
T
T
P
D
R
Q
T
A
C
G
C
L
K
G
I
L
A
A
N
T
R
I
N
L
N
N
A
N
S
L
P
G
K
C
G
I
S
I
G
Y
K
I
T
P
N
I
D
C
S
K
I
H
45
44.84
100%
21
- C- -
M045
-
A:
[2-120]
D
A
I
S
C
G
Q
V
T
S
G
L
V
P
C
F
G
Y
L
A
A
G
G
P
V
P
P
A
C
C
N
G
V
R
G
L
N
N
A
A
K
T
T
P
D
R
Q
T
A
C
G
C
L
K
G
I
L
A
A
N
T
R
I
N
L
N
N
A
N
S
L
P
G
K
C
G
I
S
I
G
Y
K
I
T
P
N
I
D
C
S
K
I
H
43
40.39
100%
26
- C- -
M043
-
A:
[2-147]
D
A
I
S
C
G
Q
V
T
S
G
L
V
P
C
F
G
Y
L
A
A
G
G
P
V
P
P
A
C
C
N
G
V
R
G
L
N
N
A
A
K
T
T
P
D
R
Q
T
A
C
G
C
L
K
G
I
L
A
A
N
T
R
I
N
L
N
N
A
N
S
L
P
G
K
C
G
I
S
I
G
Y
K
I
T
P
N
I
D
C
S
K
I
H