@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-04 )
ITCGQVQSALVPCLSYLKTTGPTPPATCCNGVRTINNAAKTTADRRTACQCLKSAAGSVKGLNPTTVAGLPGKCGVNIPYKISLSTNCATVK
Atome Classification :
(20 SA)
-----------------------------------------------------------------------.........---10.......-----.20-----------..-------------------.-----.-----.-.--...30........40........50.....-----...----60------.---------.---------.----------......70-.........80........90.---------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------ITCGQVQSA---LVPCLSYLK-----TT------------GP-------------------T-----P-----P-A--TCCNGVRTINNAAKTTADRRTACQCLKSAA-----GSV----K-------G---------L---------N----------PTTVAGL--PGKCGVNIPYKISLSTNCATVK---------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
95.04
61%
-128
- C3 -
1T12
-
NLTP1_TOBAC
A:
[2-91]
-----------------------------------------------------------------------
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T
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N
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------------
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--------------------------
P
-----
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--
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-----
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A
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----
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-------
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---------
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---------
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----------
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--
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N
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K
V
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
89.52
63%
-116
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[2-92]
-----------------------------------------------------------------------
I
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V
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---
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-----
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------------
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--------------------
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-----
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-----
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-
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--
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N
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-----
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----
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---------
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----------
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--
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K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
SP3
89.17
59%
-112
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
----------------------------------------------------------------------A
I
S
C
G
Q
V
A
S
A
---
I
A
P
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A
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-----
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------------
G
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-------------------
G
-----
P
-----
S
-
A
--
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L
N
N
A
A
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A
D
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-----
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----
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-------
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---------
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---------
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----------
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--
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N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
88.57
57%
-111
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-----------------------------------------------------------------------
M
T
C
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Q
V
Q
G
N
---
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-----
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------------
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--------------------
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-----
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-----
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--
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-----
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----
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---------
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----------
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--
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---------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
84.84
60%
-109
- C3 -
1AFH
-
NLTP_MAIZE
A:
[2-93]
-----------------------------------------------------------------------
I
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-------------------
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-----
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-----
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-
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--
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N
A
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-----
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----------
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N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
82.15
46%
-119
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-----------------------------------------------------------------------
I
D
C
G
H
V
D
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L
---
V
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-------------
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-------------------
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-----
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-----
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--
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----------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
62.62
22%
-142
- C3 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
------------------------------------------------------------------------------
N
P
---
L
P
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V
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TC-
G
I
------------
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-------------------
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-----
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-
R
--
R
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C
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A
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I
--------
P
A
Y
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I
L
M
-----
D
G
A
----
I
P
P
G
PDAQ
L
E
G
R
------
L
---------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
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L
VT
E
A
E
C
N
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A
T
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
61.51
28%
-117
- C3 -
1SM7
-
?
A:
[13-101]
------------------------------------------------------------------------------
Q
H
---
L
R
A
C
Q
Q
W
I
R
-----
Q
Q
LAG---------
S
P
F
S
E
NQWGPQQGP-------
S
-----
L
-----
R
-
E
--
Q
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C
N
E
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Y
Q
E
--------
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Q
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C
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A
A
-----
K
S
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----
R
VQ-----
G
Q--------
H
---------
G
PFQST
R
I
---
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
53.47
23%
-115
- C3 -
1B1U
-
IAAT_ELECO
A:
[15-109]
------------------------------------------------------------------------------
N
P
---
L
D
S
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Y
V
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-----
T
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CGV--------
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P
-------------------
R
LA
T
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E
M
-----
K
-
A
--
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--------
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Y
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I
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-----
D
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V
----
V
T
PS----
G
Q
H
E
G
RLLQD
L
PGCP
R
Q
V
Q
R
A
----------
F
A
P
K
L
V
T
--
E
V
E
C
N
L
A
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H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
47.76
28%
-69
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
---------------------------------------------------------------------AI
D
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-------------------
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-----
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--------
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-----
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----
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-------
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---------
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---------
D
----------
P
E
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A
S
A
L
--
P
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Q
C
G
L
A
N
A
------
P
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
47.26
25%
-78
- C3 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
-----------------------------------------------------------------------
D
L
C
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M
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E
---
L
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T------------------
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-----
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--
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--------
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E
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A
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A
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--
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C
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L
A
N
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P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
43.91
22%
-82
- C3 -
1PSY
-
2SS_RICCO
A:
[25-123]
------------------------------------------------------------------------------
K
D
---
L
S
S
C
E
R
Y
L
R
-----
Q
S
S
S
----------
R
R
S
T
GEEVLRMPGDENQQQES
Q
-----
Q
-----
L
-
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--
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--------
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HGEE
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--
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--
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--
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M
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R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
43.13
27%
-76
- C3 -
3OB4
-
?
A:
[428-485]
------------------------------------------------------------------------------------------------------------------------------------------------
Q
-
E
--
R
C
C
N
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N
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F
E
N
------
N
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R
C
M
C
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DRL
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-------
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---------
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----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
Fugue
41.29
18%
-70
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
---------------------------------------------------------------P
Y
G
R
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M
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EM
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-----
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N
LGERSQVSPR
M
R
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E
-------------------
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EPMW
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-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
41.01
21%
-62
- C3 -
2CY7
-
ATG4B_HUMAN
A:
[5-377]
TLTYDTLRF
A
E
F
E
D
F
PETSE
P
V
W
I
LG
R
K
Y
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IFTE
K
D
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A
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YRKNFPAIGGTGPTSDTGWG
C
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A
---
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--
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L
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S
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A
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TVV
M
E
E
I
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R
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C
RTSVPCSPWRP
L
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V
E
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F
M
MPQSL
G
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A
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IGYVGE
E
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AVEGCFIPDESFHCQHP
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A
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KT
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LPM
F
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EQQPD
V
L
N
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SLD
S
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D
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E
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L
28
HHSearch
40.80
16%
-100
- C3 -
1S6D
-
2SS8_HELAN
A:
[19-97]
------------------------------------------------------------------------------
E
M
---
L
N
H
C
G
M
Y
L
M
-----
K
N
LGER--------
S
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VSPR
M
R
E
E
-----------
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-----
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--
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----
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------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
40.62
23%
-80
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-----------------------------------------------------------------------
A
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------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
39.51
17%
-54
- C3 -
3UUN
-
DMD_HUMAN
A:
[338-453]
----------------------------------------------------------------------E
V
N
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LQ----------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
39.12
22%
-79
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[6-66]
------------------------------------------------------------------------------
G
Q
---
L
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G---
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----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
39.10
21%
-64
- C3 -
1N89
1
NLT2G_WHEAT
A:
[4-65]
-----------------------------------------------------------------------------
A
S
Q
---
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L
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G
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A
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P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ITCGQVQSALVPCLSYLKTTGPTPPATCCNGVRTINNAAKTTADRRTACQCLKSAAGSVKGLNPTTVAGLPGKCGVNIPYKISLSTNCATVK
33
95.89
100%
-131
- C- -
M033
-
A:
[1-93]
I
T
C
G
Q
V
Q
S
A
L
V
P
C
L
S
Y
L
K
T
T
G
P
T
P
P
A
T
C
C
N
G
V
R
T
I
N
N
A
A
K
T
T
A
D
R
R
T
A
C
Q
C
L
K
S
A
A
G
S
V
K
G
L
N
P
T
T
V
A
G
L
P
G
K
C
G
V
N
I
P
Y
K
I
S
L
S
T
N
C
A
T
V
K
37
95.77
100%
-129
- C- -
M037
-
A:
[1-93]
I
T
C
G
Q
V
Q
S
A
L
V
P
C
L
S
Y
L
K
T
T
G
P
T
P
P
A
T
C
C
N
G
V
R
T
I
N
N
A
A
K
T
T
A
D
R
R
T
A
C
Q
C
L
K
S
A
A
G
S
V
K
G
L
N
P
T
T
V
A
G
L
P
G
K
C
G
V
N
I
P
Y
K
I
S
L
S
T
N
C
A
T
V
K
38
94.54
100%
-126
- C- -
M038
-
A:
[1-93]
I
T
C
G
Q
V
Q
S
A
L
V
P
C
L
S
Y
L
K
T
T
G
P
T
P
P
A
T
C
C
N
G
V
R
T
I
N
N
A
A
K
T
T
A
D
R
R
T
A
C
Q
C
L
K
S
A
A
G
S
V
K
G
L
N
P
T
T
V
A
G
L
P
G
K
C
G
V
N
I
P
Y
K
I
S
L
S
T
N
C
A
T
V
K
35
93.75
100%
-127
- C- -
M035
-
A:
[1-123]
I
T
C
G
Q
V
Q
S
A
L
V
P
C
L
S
Y
L
K
T
T
G
P
T
P
P
A
T
C
C
N
G
V
R
T
I
N
N
A
A
K
T
T
A
D
R
R
T
A
C
Q
C
L
K
S
A
A
G
S
V
K
G
L
N
P
T
T
V
A
G
L
P
G
K
C
G
V
N
I
P
Y
K
I
S
L
S
T
N
C
A
T
V
K