@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-04 )
LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRIY
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........--.10.......-------------.----20--.------------.-------------------.-----.----...---..30........-----------40........50.......-------.-------60--------.---------.----------.......--70........80........90-------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LNCGQVDS--KMKPCLTYVQ-------------G----G---P------------G-------------------P-----S----GEC---CNGVRDLHNQAQ-----------SSGDRQTVCNCLKGIARGI-------H-------N---------L---------N----------LNNAASI--PSKCNVNVPYTISPDIDCSRIY-------------------------------------------------------------
16
HHSearch
95.77
72%
-121
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
D
S
--
L
V
R
P
C
L
S
Y
V
Q
-------------
G
----
G
---
P
------------
G
-------------------
P
-----
S
----
G
Q
C
---
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
L
K
G
I
A
R
G
I
-------
H
-------
N
---------
L
---------
N
----------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
I
S
L
N
I
D
C
S
R
V
--------------------------------------------------------------
11
HHSearch
83.31
44%
-126
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[2-92]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
G
Q
V
S
S
--
S
L
A
P
C
I
P
Y
V
R
-------------
G
----
G
---
G
------------
A
-------------------
V
-----
P
----
P
A
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
K
Q
L
S
A
S
V
-------
P
-------
G
---------
V
---------
N
----------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
I
S
A
S
T
N
C
A
T
V
K
-------------------------------------------------------------
28
SP3
82.51
53%
-119
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
S
C
G
Q
V
A
S
--
A
I
A
P
C
I
S
Y
A
R
-------------
G
----
Q
---
G
------------
S
G------------------
P
-----
S
----
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
G
V
-------
S
-------
G
---------
L
---------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
-------------------------------------------------------------
12
HHSearch
81.25
54%
-117
- C2 -
1AFH
-
NLTP_MAIZE
A:
[2-93]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
C
G
Q
V
A
S
--
A
I
A
P
C
I
S
Y
A
R
-------------
G
----
Q
---
G
------------
S
G------------------
P
-----
S
----
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
G
V
-------
S
-------
G
---------
L
---------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
-------------------------------------------------------------
14
HHSearch
80.99
49%
-117
- C2 -
1T12
-
NLTP1_TOBAC
A:
[2-91]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
G
Q
V
T
S
--
N
L
A
P
C
L
A
Y
L
R
-------------
N
----
T
---
G
--------------------------------
P
-----
L
----
G
R
C
---
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
L
K
S
A
A
G
A
I
-------
S
-------
G
---------
I
---------
N
----------
L
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
Y
K
I
S
P
S
T
D
C
S
K
V
Q
-------------------------------------------------------------
13
HHSearch
73.10
38%
-112
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
Q
G
--
N
L
A
Q
C
I
G
F
L
Q
-------------
K
----
G
---
G
------------
V
-------------------
V
-----
P
----
P
S
C
---
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
L
K
A
A
A
G
A
V
-------
R
-------
G
---------
I
---------
N
----------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
I
S
T
S
T
N
C
N
S
I
N
-------------------------------------------------------------
25
HHSearch
60.57
25%
-122
- C2 -
1SM7
-
?
A:
[13-101]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
H
L
R
A
C
Q
Q
W
I
R
-------------
Q
QLA-
G
S
--
P
F
S
E
NQWGPQQGP
S
-------------------
L
-----
R
----
E
Q
C
---
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
K
Q
A
A
K
S
V
-------
R
VQ-----
G
Q--------
H
---------
G
PFQST
R
I
---
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
--------------------------------------------------------------------------
23
HHSearch
59.37
24%
-137
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
L
P
S
C
R
W
Y
V
T
S
R
TC---------
G
----
I
---
G
------------
P
R------------------
L
P
W
P
E
L
K
----
R
R
C
---
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
S
I
L
M
D
G
A
-------
I
P
P
G
PDAQ
L
E
G
R
------
L
---------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
--------------------------------------------------------------------------
36
SP3
51.52
13%
-133
* C2 *
1HSS
-
IAA1_WHEAT
A:
[5-124]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MCYPGQA
F
Q
----
V
P
--
A
L
P
A
C
R
P
L
L
R
-------------
L
Q
C
N
-
G
---
S
------------
Q
-------------------
V
-----
P
E
A
V
L
R
D
C
---
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
S
M
L
D
S
M
Y
K
E
HGAF
P
-------
R
---------
C
---------
R
R
E
V
V
------
K
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
--
V
D
A
S
G
D
G
A
Y
V
C
K
D
V
A
A
YPDA----------------------------------------------------
2
Fugue
46.36
20%
-85
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AI
D
L
C
G
M
S
Q
D
--
E
L
N
E
C
K
P
A
V
S
-------------
K
----
E
NP-
T
------------
S
-------------------
P
-----
S
----
Q
P
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
S
P
W
L
G
S
-------
F
-------
G
---------
V
---------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
------
P
T
C
-----------------------------------------------------------------
22
HHSearch
45.70
16%
-97
- C2 -
1B1U
-
IAAT_ELECO
A:
[15-109]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
L
D
S
C
R
W
Y
V
S
-------------
T
R
T
CG
V
---
G
------------
P
RLA
T
Q
E
-------------
M
-----
K
----
A
R
C
---
C
R
Q
L
E
A
I
-------------------
P
A
Y
C
R
C
E
A
V
R
I
L
M
D
G
V
-------
V
T
PS----
G
Q
H
E
G
RLLQD
L
PGCP
R
Q
V
Q
R
A
----------
F
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
H
-------------------------------------------------------------------------
26
HHSearch
44.48
25%
-65
- C2 -
1PSY
-
2SS_RICCO
A:
[25-119]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
D
L
S
S
C
E
R
Y
L
R
-------------
Q
----
S
S
S
R
R
------------
S
T
GEEVLRMPGDENQQQESQ
Q
-----
L
----
Q
Q
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
A
E
D
Q
-------
I
Q
Q
G
----
Q
---------
L
HGEE
S
E
R
--
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
R
C
M
--------------------------------------------------------------------------
17
HHSearch
43.76
20%
-76
- C2 -
2RKN
2
DIRL1_ARATH
A:
[4-75]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
C
G
M
S
Q
D
--
E
L
N
E
C
K
P
A
V
S
-------------
K
----
E
---
N
PT----------
S
-------------------
P
-----
S
----
Q
P
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
S
P
W
L
G
S
-------
F
-------
G
---------
V
---------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
-------------------------------------------------------------------------
24
HHSearch
42.72
20%
-87
- C2 -
3OB4
-
?
A:
[427-485]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
-----
Q
----
E
R
C
---
C
N
E
L
N
E
F
E
N
-----------------
N
Q
R
C
M
C
E
A
L
Q
Q
I
M
E
N
Q
S
DRL---
Q
-------
G
---------
R
---------
Q
Q
E
Q
Q
F
-----
K
R
E
L
R
N
L
--
P
Q
Q
C
G
L
R
A
P
--------------------------------------------------------------------------
33
SP3
42.35
15%
-66
- C2 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
A
G
S
V
V
D
A
L
R
A
V
R
-------------
N
----
A
----------------
A
-------------------
P
-----
D
----
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
A
P
T
V
-------
M
L
E
S
S
G
--
G
---------
L
---------
S
----------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
---
L
A
V
G
---
A
L
T
H
SVRVL
D
I
G
L
D
M--------------------------------------------------
7
Fugue
41.16
23%
-32
- C2 -
1V74
1
A:
[1-107]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LNDPLDSGR
F
S
R
K
Q
L
D
K
--
K
Y
K
H
A
G
D
F
G
I
-------------
S
----
D
---
T
------------
K
-------------------
K
-----
N
----
R
E
T
---
L
T
K
F
R
D
A
I
E
E
H
L
-----------
S
D
K
D
T
V
E
K
G
T
Y
R
R
E
K
G
S
K
V
-------
Y
F
------
N
---------
P
---------
N
----------
T
M
N
V
V
I
I
--
K
S
N
G
E
F
L
S
G
W
K
I
N
P
D
A
D
N
G
R
I
Y
L
E
TGEL-------------------------------------------------------
3
Fugue
40.99
20%
-71
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
--
N
A
G
--
Q
L
T
V
C
T
G
A
I
A
-------------
G
----
G
---
A
------------
R
-------------------
P
-----
T
----
A
A
C
---
C
S
S
L
R
A
Q
Q
G
C
F
C
-----------
Q
F
A
K
D
P
R
Y
G
R
Y
V
N
S
----------------------------------------------------
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
T
-------
C
H
----------------------------------------------------------------
34
SP3
38.40
15%
-67
- C2 -
1QPO
-
NADC_MYCTU
A:
[1-284]
----------------------------------------------------------------------------------------------------------------------------------------------GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
A
G
S
V
V
D
A
L
R
A
V
R
-------------
N
----
A
----------------
A
-------------------
P
-----
D
----
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
A
P
T
V
M
L
E
S
S
--
G
-------
G
---------
L
---------
S
----------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
---
L
A
V
G
---
A
L
T
H
SVRVL
D
I
G
L
D
M--------------------------------------------------
10
Fugue
38.19
15%
-50
- C2 -
1EWK
4
GRM1_RAT
A:
[4-480]
R
S
V
A
R
M
D
G
D
V
I
I
G
A
L
F
SVHHQPPAEKVPERKC
G
E
I
R
E
QYG
I
Q
R
V
E
A
M
F
H
T
L
D
K
I
N
A
DPVLLPN
I
T
L
G
S
E
I
R
D
SCWH
S
S
V
A
L
E
Q
S
I
E
F
I
RKPIA
G
V
I
G
PGS
S
S
V
A
I
Q
V
Q
N
L
L
Q
L
F
D
I
P
Q
I
A
YSATSIDLSDKTLYKYFLRVVPSD
T
L
Q
A
R
A
M
L
D
I
V
K
R
Y
NWT
Y
V
S
A
V
H
T
EG
N
Y
G
E
S
G
M
D
A
F
K
E
L
A
A
Q
E
GLCIA
H
S
D
K
I
Y
SNAG
E
K
S
F
D
R
L
L
R
K
L
R
E
R
LPKAR
V
V
V
C
FCE
G
M
T
V
R
G
L
L
S
A
M
R
R
L
GVVGEFS
L
I
G
S
DGWADRDEVIEGYEVEANG
G
I
T
I
K
LQSPEV
R
S
F
D
D
Y
F
L
K
LRLDTNTRNPW
F
P
E
F
W
Q
H
R
F
Q
C
R
L
P
G
H
--
L
L
E
N
-----------------------------------------
P
-------------------
N
-----
F
----
K
K
V
---
C
T
G
N
E
S
L
E
E
N
Y
V
-----------
Q
D
S
K
M
G
F
V
I
N
A
I
Y
A
M
A
H
G
L
-------
Q
-------
N
---------
M
---------
H
----------
H
A
L
C
P
G
H
--
V
G
L
C
------
D
A
M
K
P
I
D
G
R
K
L
L
D
F
L
I
K
S
S
F
V
G
VSG
E
E
V
W
F
D
EKG
D
A
P
G
R
Y
D
I
M
N
L
Q
YTEANRYDYVHV
G
T
W
H
EG
V
L
N
I
DDYKI
4
Fugue
37.13
14%
-59
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
E
A
E
--
M
L
N
H
C
G
M
Y
L
M
KNLGERSQVSPR
M
R
----
E
---
E
------------
D
-------------------
H
-----
K
----
Q
L
C
---
C
M
Q
L
K
N
L
D
E
K
C
M
-------------------
C
P
A
I
M
M
M
L
N
E
P
MWIRM--
R
-------
D
---------
Q
---------
V
----------
M
S
M
A
H
N
L
--
P
I
E
C
N
L
M
-------
S
Q
P
C
Q
M
---------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRIY
42
94.28
100%
-132
- C- -
M042
-
A:
[1-93]
L
N
C
G
Q
V
D
S
K
M
K
P
C
L
T
Y
V
Q
G
G
P
G
P
S
G
E
C
C
N
G
V
R
D
L
H
N
Q
A
Q
S
S
G
D
R
Q
T
V
C
N
C
L
K
G
I
A
R
G
I
H
N
L
N
L
N
N
A
A
S
I
P
S
K
C
N
V
N
V
P
Y
T
I
S
P
D
I
D
C
S
R
I
Y
44
93.20
100%
-126
- C- -
M044
-
A:
[1-123]
L
N
C
G
Q
V
D
S
K
M
K
P
C
L
T
Y
V
Q
G
G
P
G
P
S
G
E
C
C
N
G
V
R
D
L
H
N
Q
A
Q
S
S
G
D
R
Q
T
V
C
N
C
L
K
G
I
A
R
G
I
H
N
L
N
L
N
N
A
A
S
I
P
S
K
C
N
V
N
V
P
Y
T
I
S
P
D
I
D
C
S
R
I
Y
43
92.93
100%
-136
- C- -
M043
-
A:
[1-93]
L
N
C
G
Q
V
D
S
K
M
K
P
C
L
T
Y
V
Q
G
G
P
G
P
S
G
E
C
C
N
G
V
R
D
L
H
N
Q
A
Q
S
S
G
D
R
Q
T
V
C
N
C
L
K
G
I
A
R
G
I
H
N
L
N
L
N
N
A
A
S
I
P
S
K
C
N
V
N
V
P
Y
T
I
S
P
D
I
D
C
S
R
I
Y