@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-05 )
ITCGQVSSNLVPCFDYVRSGGPVPPACCNGIRTINGLAKTTPDRQAACNCLKSLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....----.--..--.---10.......-------------.--------20---.----------------------.------------------.------------..---....30........-----------40........50.--..-...-.------.-------60--------.-------.----------.....------------------..--70........80.--.......90--------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ITCGQ----V--SS--N---LVPCFDYVR-------------S--------G----G----------------------P------------------V------------PP---ACCNGIRTINGLAK-----------TTPDRQAACNCLK--SL-AGS-V------S-------G---------V-------N----------PGNAE------------------SL--PGKCGVNVPYKIS--TSTNCATVK--------
11
HHSearch
93.87
78%
-118
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[2-92]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
G
Q
----
V
--
S
S
--
S
---
L
A
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P
Y
V
R
-------------
G
--------
G
----
G
----------------------
A
------------------
V
------------
P
P
---
A
C
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
K
--
Q
L
-
S
A
S
-
V
------
P
-------
G
---------
V
-------
N
----------
P
N
N
A
A
------------------
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
I
S
--
A
S
T
N
C
A
T
V
K
--------
14
HHSearch
87.31
57%
-115
- C3 -
1T12
-
NLTP1_TOBAC
A:
[2-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
G
Q
----
V
--
T
S
--
N
---
L
A
P
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L
A
Y
L
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-------------
N
--------
T
----
G
-----------------------------------------
P
------------
L
G
---
R
C
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
L
K
--
S
A
-
A
G
A
-
I
------
S
-------
G
---------
I
-------
N
----------
L
G
K
A
A
------------------
G
L
--
P
S
T
C
G
V
N
I
P
Y
K
I
S
--
P
S
T
D
C
S
K
V
Q
--------
13
HHSearch
85.85
58%
-118
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
----
V
--
Q
G
--
N
---
L
A
Q
C
I
G
F
L
Q
-------------
K
--------
G
----
G
----------------------
V
------------------
V
------------
P
P
---
S
C
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
L
K
--
A
A
-
A
G
A
-
V
------
R
-------
G
---------
I
-------
N
----------
P
N
N
A
E
------------------
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
I
S
--
T
S
T
N
C
N
S
I
N
--------
32
SP3
83.61
56%
-114
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
S
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Q
----
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A
S
--
A
---
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A
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-------------
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--------
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----
G
----------------------
S
G-----------------
P
------------
S
A
---
G
C
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
--
N
A
-
A
A
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-
V
------
S
-------
G
---------
L
-------
N
----------
A
G
N
A
A
------------------
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
--
T
S
T
D
C
S
R
V
N
--------
16
HHSearch
78.41
44%
-121
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
----
V
--
D
S
--
L
---
V
R
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L
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Y
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-------------
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--------
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----
P
----------------------
G
------------------
P
------------
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---
Q
C
C
D
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N
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H
N
Q
A
R
-----------
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S
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Q
S
A
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N
C
L
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--
G
I
-
A
R
G
-
I
------
H
-------
N
---------
L
-------
N
----------
E
D
N
A
R
------------------
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
I
S
--
L
N
I
D
C
S
R
V
---------
12
HHSearch
76.03
56%
-95
- C3 -
1AFH
-
NLTP_MAIZE
A:
[2-93]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
C
G
Q
----
V
--
A
S
--
A
---
I
A
P
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I
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Y
A
R
-------------
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--------
Q
----
G
----------------------
S
G-----------------
P
------------
S
A
---
G
C
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
--
N
A
-
A
A
G
-
V
------
S
-------
G
---------
L
-------
N
----------
A
G
N
A
A
------------------
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
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--
T
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T
D
C
S
R
V
N
--------
26
HHSearch
62.38
32%
-126
- C3 -
1SM7
-
?
A:
[13-101]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
H
---
L
R
A
C
Q
Q
W
I
R
-------------
Q
QLA-----
G
----
S
----------------------
P
F
S
E
NQWGPQQGPS-----
L
------------
R
E
---
Q
C
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
K
--
Q
A
-
A
K
S
-
V
------
R
VQ-----
G
Q--------
H
-------
G
PFQST
R
I
---
Y
Q
I
A
K
------------------
N
L
--
P
N
V
C
N
M
K
Q
I
-----------------------
24
HHSearch
61.16
27%
-128
- C3 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
---
L
P
S
C
R
W
Y
V
T
-------------
S
R
TCG----
I
----
G
----------------------
P
------------------
R
LP
W
P
E
L
------
K
R
---
R
C
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
S
--
I
L
-
M
D
G
-
A
------
I
P
P
G
PDAQ
L
E
G
R
------
L
-------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
------------------
T
L
VT
E
A
E
C
N
L
A
T
I
-----------------------
37
SP3
56.85
18%
-115
- C3 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
----
V
--
A
A
A
G
S
---
V
V
D
A
L
R
A
V
R
-------------
N
--------
A
----
A
----------------------
P
------------------
D
------------
L
P
C
E
V
E
V
D
S
-
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
--
S
R
-
A
P
T
-
V
M
L
E
S
S
-
G
-------
G
---------
L
-------
S
----------
L
Q
T
A
A
------------------
T
Y
---
A
E
T
G
V
D
Y
---
L
A
--
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M
29
HHSearch
55.55
27%
-136
* C3 *
1HSS
-
IAA1_WHEAT
A:
[15-105]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
--
A
---
L
P
A
C
R
P
L
L
R
-------------
L
--------
Q
C
N
--
G
----------------------
S
QVP
E
A
-------------
V
------------
L
R
---
D
C
C
Q
Q
L
A
H
I
S
-------------------
E
W
C
R
C
G
A
L
Y
--
S
M
-
L
D
S
-
M
------
Y
K
E
H-----GAFPRCR
R
E
V
-------
V
----------
K
L
T
A
A
------------------
S
I
--
T
A
V
C
R
L
P
I
V
V
----------------------
36
SP3
51.14
18%
-114
- C3 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
----
V
--
A
A
A
G
S
---
V
V
D
A
L
R
A
V
R
-------------
N
--------
A
----
A
----------------------
P
------------------
D
------------
L
P
C
E
V
E
V
D
S
-
L
E
Q
L
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A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
--
S
R
-
A
P
T
-
V
------
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--
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---------
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-------
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----------
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Q
T
A
A
------------------
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Y
---
A
E
T
G
V
D
Y
---
L
A
--
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M
30
HHSearch
49.41
21%
-91
- C3 -
1W2Q
-
CONG_ARAHY
A:
[22-114]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
--
N
---
L
K
P
C
E
Q
H
I
M
-------------
Q
R
I
M-----
G
----
E
QE--------------------
Q
Y-----------------
D
SYDIRSTR
S
S
D
Q
Q
Q
---
R
C
C
D
E
L
N
E
M
E
----------------
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-
T
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C
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I
-
M
E
N
-
Q
------
C
DRLQ---
D
---------
R
-------
Q
MV
Q
Q
F
-----
K
R
E
L
M
------------------
S
L
--
P
Q
Q
C
N
F
R
A
P
-----------------------
17
HHSearch
48.71
29%
-90
- C3 -
2RKN
2
DIRL1_ARATH
A:
[4-75]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
C
G
M
----
S
--
Q
D
--
E
---
L
N
E
C
K
P
A
V
S
-------------
K
--------
E
----
N
PT--------------------
S
------------------
P
------------
S
Q
---
P
C
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
--
S
P
W
L
G
S
-
F
--------------
G
---------
V
-------
D
----------
P
E
L
A
S
------------------
A
L
--
P
K
Q
C
G
L
A
N
A
P
----------------------
10
Fugue
45.37
21%
-108
- C3 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
C
Y
P
GQAF
Q
--
V
P
--
A
---
L
P
A
C
R
P
L
L
R
-------------
L
Q
C
N
GSQVP-----
E
----------------------
A
------------------
V
------------
L
R
---
D
C
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
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C
G
A
L
Y
--
S
M
-
L
D
S
----------------
M
---------
Y
-------
K
----------
E
H
---GAFPRCR
R
E
V
V
K
L
T
A
A
S
I
T
A
----
V
C
R
L
P
I
V
V
D
A
S
GD
G
A
Y
V
C
K
D
V
A
A
YPDA---
22
HHSearch
45.01
22%
-101
- C3 -
1B1U
-
IAAT_ELECO
A:
[15-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
---
L
D
S
C
R
W
Y
V
S
-------------
T
R
T
CG----
V
----
G
----------------------
P
RLA
T
Q
E
------------
M
------------
K
A
---
R
C
C
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Q
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E
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I
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A
Y
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R
--
I
L
-
M
D
G
-
V
------
V
T
PS----
G
Q
H
E
G
RLLQD
L
-------
P
GCP
R
Q
V
Q
R
A
-
F
A
P
K
L
------------------
V
T
--
E
V
E
C
N
L
A
T
I
H
----------------------
2
Fugue
44.89
28%
-67
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AI
D
L
C
G
M
----
S
--
Q
D
--
E
---
L
N
E
C
K
P
A
V
S
-------------
K
--------
E
----
N
----------------------
P
------------------
T
------------
S
P
S
Q
-
P
C
C
T
A
L
Q
H
A
-------------------
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F
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Y
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--
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-
W
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-
S
------
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-------
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---------
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-------
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----------
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E
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A
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------------------
A
L
--
P
K
Q
C
G
L
A
N
A
--------
P
T
C
------------
9
Fugue
44.05
20%
-91
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
----
Q
--
M
E
--
E
A
EM
L
N
H
C
G
M
Y
L
M
KNLGERSQVSPR
M
R
--------
E
----
E
----------------------
D
------------------
H
------------
K
Q
---
L
C
C
M
Q
L
K
N
L
-------------------
D
E
K
C
M
C
P
A
I
M
--
M
M
-
L
N
E
-
P
------
M
-------
W
---------
I
-------
R
MR
D
Q
V
-----
M
S
M
A
H
------------------
N
L
--
P
I
E
C
N
L
---------
M
S
Q
P
C
Q
M
----------
23
HHSearch
43.98
22%
-68
- C3 -
1PSY
-
2SS_RICCO
A:
[25-121]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
D
---
L
S
S
C
E
R
Y
L
R
-------------
Q
--------
S
S
S
R
R
S
----------------------
T
GEEVLRMPGDENQQQESQ
Q
------------
L
Q
---
Q
C
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
--
Y
I
-
A
E
D
-
Q
------
I
Q
Q
G
----
Q
---------
L
HGEE
S
E
R
V
----------
A
Q
R
A
G
------------------
E
I
--
V
S
S
C
G
V
R
--
C
M
R
Q
-------------------
7
Fugue
43.94
21%
-15
- C3 -
1PSY
-
2SS_RICCO
A:
[1-125]
----------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
Q
----
E
VQ
R
K
--
D
---
L
S
S
C
E
R
Y
L
R
-------------
Q
--------
S
----
S
S
R
R
S
T
GEEVLRMPGDENQQQES
Q
------------------
Q
------------
L
Q
---
Q
C
C
N
Q
V
K
Q
V
R
D
E
C
Q
-----------
C
E
A
I
K
Y
I
A
E
D
Q
I
Q
Q
G
Q
L
-
H
G
E
-
E
------
S
-------
E
---------
R
-------
V
----------
A
Q
R
A
G
------------------
E
I
--
V
S
S
C
G
V
R
C
M
R
Q
T
R
--
T
N
---------------
28
HHSearch
42.99
23%
-86
- C3 -
2LVF
-
?
A:
[16-101]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
M
---
L
S
H
C
R
M
Y
M
R
-------------
Q
Q
M
E
-----
E
----
S
----------------------
T
------------------
Y
QTMPRRGMEP
H
-
M
S
---
E
C
C
E
Q
L
E
G
M
-------------------
D
E
S
C
R
C
E
G
L
R
--
M
M
-
M
R
M
M
Q
Q
K
EM
Q
P
R
-------
G
E
Q
M
R
-----
R
-------
M
----------
M
R
L
A
E
------------------
N
I
--
P
S
R
C
N
L
S
-------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ITCGQVSSNLVPCFDYVRSGGPVPPACCNGIRTINGLAKTTPDRQAACNCLKSLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK
47
93.64
100%
-128
- C- -
M047
-
A:
[1-125]
I
T
C
G
Q
V
S
S
N
L
V
P
C
F
D
Y
V
R
S
G
G
P
V
P
P
A
C
C
N
G
I
R
T
I
N
G
L
A
K
T
T
P
D
R
Q
A
A
C
N
C
L
K
S
L
A
G
S
V
S
G
V
N
P
G
N
A
E
S
L
P
G
K
C
G
V
N
V
P
Y
K
I
S
T
S
T
N
C
A
T
V
K
42
92.28
100%
-126
- C- -
M042
-
A:
[1-123]
I
T
C
G
Q
V
S
S
N
L
V
P
C
F
D
Y
V
R
S
G
G
P
V
P
P
A
C
C
N
G
I
R
T
I
N
G
L
A
K
T
T
P
D
R
Q
A
A
C
N
C
L
K
S
L
A
G
S
V
S
G
V
N
P
G
N
A
E
S
L
P
G
K
C
G
V
N
V
P
Y
K
I
S
T
S
T
N
C
A
T
V
K
48
91.38
100%
-120
- C- -
M048
-
A:
[1-281]
I
T
C
G
Q
V
S
S
N
L
V
P
C
F
D
Y
V
R
S
G
G
P
V
P
P
A
C
C
N
G
I
R
T
I
N
G
L
A
K
T
T
P
D
R
Q
A
A
C
N
C
L
K
S
L
A
G
S
V
S
G
V
N
P
G
N
A
E
S
L
P
G
K
C
G
V
N
V
P
Y
K
I
S
T
S
T
N
C
A
T
V
K
46
90.08
100%
-120
- C- -
M046
-
A:
[1-125]
I
T
C
G
Q
V
S
S
N
L
V
P
C
F
D
Y
V
R
S
G
G
P
V
P
P
A
C
C
N
G
I
R
T
I
N
G
L
A
K
T
T
P
D
R
Q
A
A
C
N
C
L
K
S
L
A
G
S
V
S
G
V
N
P
G
N
A
E
S
L
P
G
K
C
G
V
N
V
P
Y
K
I
S
T
S
T
N
C
A
T
V
K