@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-05 )
EPAPAPAPGEEACGKVVQDIMPCLHFVKGEEKEPSKECCSGTKKLSEEVKTTEQKREACKCIVRATKGISGIKNELVAEVPKKCDIKTTLPPITADFDCSKIQST
Atome Classification :
(20 SA)
----------------------------------.........10........---20....-----...------------.---------30--------------------.----.--------...------------....40....---------....-------------50--------------------------...-------....-----------.60.-----...-...-.----70..----------.-----.-------.....80........90-----.------........100-...------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------EPAPAPAPGEEACGKVVQD---IMPCLH-----FVK------------G---------E---------------------E----K--------EPS------------KECCSGTKKL---------SEEV-------------KT--------------------------TEQ-------KREA-----------CKCI-----VRA-TKG-I----S-GI----------K-----N-------ELVAEVPKKCDIKTTL------P------PITADFDCSKI-QST------------------------------------------------------------------------------------------------------------------
11
SP3
93.54
30%
-80
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-------------------------------------------
A
I
S
C
G
Q
V
A
S
A
---
I
A
P
C
I
S
-----
Y
A
R
------------
G
---------
Q
---------------------
G
----
S
--------
G
P
S
------------
A
G
C
C
S
G
V
R
S
L
---------
N
N
A
A
-------------
R
T
--------------------------
T
A
D
-------
R
R
A
A
-----------
C
N
C
L
-----
K
N
A
-
A
A
G
-
V
----
S
-
G
L
----------
N
-----
A
-------
G
N
A
A
S
I
P
S
K
C
G
V
S
I
P
Y
-------------
T
I
S
T
S
T
D
C
S
R
V
-
N
--------------------------------------------------------------------------------------------------------------------
21
HHSearch
92.71
34%
-70
- C3 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
-------------------------------------------
A
I
S
C
G
Q
V
A
S
A
---
I
A
P
C
I
S
-----
Y
A
R
------------
G
---------
Q
---------------------
G
----
S
--------
G
P
S
------------
A
G
C
C
S
G
V
R
S
L
---------
N
N
A
A
-------------
R
T
--------------------------
T
A
D
-------
R
R
A
A
-----------
C
N
C
L
-----
K
N
A
-
A
A
G
-
V
----
S
-
G
L
----------
N
-----
A
-------
G
N
A
A
S
I
P
S
K
C
G
V
S
I
P
Y
-------------
T
I
S
T
S
T
D
C
S
R
V
-
N
--------------------------------------------------------------------------------------------------------------------
22
HHSearch
92.65
35%
-96
- C3 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
-------------------------------------------
A
I
T
C
G
Q
V
T
S
N
---
L
A
P
C
L
A
-----
Y
L
R
------------
N
---------
T
---------------------
G
--------------
P
L
------------
G
R
C
C
G
G
V
K
A
L
---------
V
N
S
A
-------------
R
T
--------------------------
T
E
D
-------
R
Q
I
A
-----------
C
T
C
L
-----
K
S
A
-
A
G
A
-
I
----
S
-
G
I
----------
N
-----
L
-------
G
K
A
A
G
L
P
S
T
C
G
V
N
I
P
Y
-------------
K
I
S
P
S
T
D
C
S
K
V
-
Q
--------------------------------------------------------------------------------------------------------------------
25
HHSearch
86.94
30%
-70
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
--------------------------------------------
I
D
C
G
H
V
D
S
L
---
V
R
P
C
L
S
-----
Y
V
Q
------------
G
---------
G
--------------------------
P
--------
G
P
S
------------
G
Q
C
C
D
G
V
K
N
L
---------
H
N
Q
A
-------------
R
S
--------------------------
Q
S
D
-------
R
Q
S
A
-----------
C
N
C
L
-----
K
G
I
-
A
R
G
-
I
----
H
-
N
L
----------
N
-----
E
-------
D
N
A
R
S
I
P
P
K
C
G
V
N
L
P
Y
-------------
T
I
S
L
N
I
D
C
S
R
V
----------------------------------------------------------------------------------------------------------------------
23
HHSearch
83.48
25%
-82
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
-------------------------------------------
M
I
T
C
G
Q
V
S
S
S
---
L
A
P
C
I
P
-----
Y
V
R
------------
G
---------
G
---------------------
G
-------------
A
V
P
------------
P
A
C
C
N
G
I
R
N
V
---------
N
N
L
A
-------------
R
T
--------------------------
T
P
D
-------
R
Q
A
A
-----------
C
N
C
L
-----
K
Q
L
-
S
A
S
-
V
----
P
-
G
V
----------
N
-----
P
-------
N
N
A
A
A
L
P
G
K
C
G
V
S
I
P
Y
-------------
K
I
S
A
S
T
N
C
A
T
V
-
K
--------------------------------------------------------------------------------------------------------------------
26
HHSearch
80.60
25%
-69
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
--------------------------------------------
M
T
C
G
Q
V
Q
G
N
---
L
A
Q
C
I
G
-----
F
L
Q
------------
K
---------
G
---------------------
G
-------------
V
V
P
------------
P
S
C
C
T
G
V
K
N
I
---------
L
N
S
S
-------------
R
T
--------------------------
T
A
D
-------
R
R
A
V
-----------
C
S
C
L
-----
K
A
A
-
A
G
A
-
V
----
R
-
G
I
----------
N
-----
P
-------
N
N
A
E
A
L
P
G
K
C
G
V
N
I
P
Y
-------------
K
I
S
T
S
T
N
C
N
S
I
-
N
--------------------------------------------------------------------------------------------------------------------
6
Fugue
61.57
15%
-50
- C3 -
4HR1
-
?
A:
[3-120]
----------------------------------------
F
N
G
A
Q
T
V
I
Q
K
I
S
W
---
L
R
T
A
I
A
-----
F
L
K
------------
G
Y
M
E
T
T
GAT
K
K
---------------------
E
----
L
--------
E
Q
V
------------
E
K
L
K
E
R
V
D
E
I
---------
A
T
A
V
-------------
N
W
--------------------------
D
V
Y
-------
A
Q
Y
A
R
GDFNLLS
D
D
E
Y
K
E
I
-----
Q
K
A
-
L
L
V
-
L
----
E
-
D
I
----------
K
-----
E
-------
Q
I
I
V
E
M
L
R
V
G
L
A
Q
G
Q
M
------
G
------
T
L
K
I
S
D
Y
L
D
S
L
-
D
S
-------------------------------------------------------------------------------------------------------------------
13
SP3
59.19
12%
-69
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
------------------------------------
P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
A
EM
L
N
H
C
G
M
-----
Y
L
M
KNLGERSQVSPR
M
---------
R
---------------------
E
----
E
--------
D
H
K
------------
Q
L
C
C
M
Q
L
K
N
L
--------------------------------------------------------
D
-------
E
K
C
M
-----------
C
P
A
I
-----
M
M
M
-
L
N
E
-
P
----
M
-
W
I
----------
R
MR
D
Q
V
M
-------
S
M
A
H
N
L
P
I
E
C
N
L
M
S
Q
P
------
C
------
Q
M
-------------------------------------------------------------------------------------------------------------------------------
10
Fugue
58.65
16%
-68
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
------------------------------------
P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
A
EM
L
N
H
C
G
M
-----
Y
L
M
------------
K
---------
N
---------------------
L
----
G
--------
E
R
S
QVSPR
M
R
E
E
D
H
K
Q
L
C
C
M
Q
L
K
N
L
---------
D
--------------------------------------------
E
K
C
-------
M
C
P
A
-----------
I
M
M
M
-----
L
N
E
-
P
M
W
-
I
----
R
-
M
R
----------
D
-----
Q
V
M
-----
S
M
A
H
N
L
P
I
E
C
N
L
--------------------
M
S
Q
P
C
Q
M
-----------------------------------------------------------------------------------------------------------------------
5
Fugue
54.28
17%
-27
- C3 -
1PSY
-
2SS_RICCO
A:
[1-125]
-----------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
Q
E
V
Q
R
KD-
L
S
S
C
E
R
-----
Y
L
R
------------
Q
---------
S
S
S
R
R
S
T
GEEVLRMPGDENQQQ
E
----
S
--------
Q
Q
L
------------
Q
Q
C
C
N
Q
V
K
Q
V
---------
R
D
E
--------------------------------------------
C
-------
Q
C
E
A
-----------
I
K
Y
I
-----
A
E
D
-
Q
I
Q
-
Q
----
G
-
Q
L
----------
H
-----
G
EE
S
E
R
V
A
Q
R
A
G
E
I
V
S
S
C
G
V
R
C
M
R
------
Q
------
T
R
T
N
-----------------------------------------------------------------------------------------------------------------------------
2
Fugue
52.00
23%
-43
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
------------------------------------------
A
I
D
L
C
G
M
S
Q
D
E
---
L
N
E
C
K
P
-----
A
V
S
------------
K
---------
E
N--------------------
P
----
T
--------
S
P
S
------------
Q
P
C
C
T
A
L
Q
H
A
---------
D
------------------------------------------------------
F
A
C
L
-----------
C
G
Y
K
-----
N
S
P
-
W
L
G
-
S
----
F
-
G
V
----------
D
-----
P
-------
E
L
A
S
A
L
P
K
Q
C
G
L
A
N
A
P
-------------------
T
C
-------------------------------------------------------------------------------------------------------------------------
27
HHSearch
47.65
22%
-43
- C3 -
2RKN
2
DIRL1_ARATH
A:
[2-75]
-------------------------------------------
I
D
L
C
G
M
S
Q
D
E
---
L
N
E
C
K
P
-----
A
V
S
------------
K
---------
E
---------------------
N
----
P
T-------
S
P
S
------------
Q
P
C
C
T
A
L
Q
H
A
--------------------------------------------------------
D
-------
F
A
C
L
-----------
C
G
Y
K
-----
N
S
P
W
L
G
S
-
F
------
G
V
----------
D
-----
P
-------
E
L
A
S
A
L
P
K
Q
C
G
L
A
N
A
P
----------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
46.46
16%
-60
- C3 -
1S6D
-
2SS8_HELAN
A:
[19-97]
---------------------------------------------------
E
M
---
L
N
H
C
G
M
-----
Y
L
M
------------
K
---------
N
---------------------
L
GERS
Q
VSPR
M
R
E
E
D
H
K
------------
Q
L
C
C
M
Q
L
K
N
L
---------
D
E
------------------------------------------------------
K
C
M
-----------
C
P
A
I
-----
M
M
M
-
L
N
E
-
P
----
M
W
I
R
MR
D
Q
------
V
-----
M
-------
S
M
A
H
N
L
P
I
E
C
N
L
M
-------------------------------------------------------------------------------------------------------------------------------------------------
9
Fugue
43.89
18%
-16
- C2 -
3P8B
9
SPT5_PYRFU
B:
[2-148]
-------------------A
G
K
I
F
A
V
R
V
T
HGQ
E
E
T
T
A
K
L
I
Y
S
K
V
R
T
Y
N
L
P
I
Y
A
---
I
L
A
P
S
R
VKG
Y
I
F
V
E
------------
A
---------
P
---------------------
N
----
K
--------
G
V
V
------------
D
E
A
I
R
G
I
R
H
A
RGVLPGEVP
F
K
E
I
-------------
E
H
--------------------------
F
L
E
-------
E
K
P
A
-----------
V
S
G
L
EPG
D
L
V
E
V
-
I
A
G
P
F
----
K
-
G
Q
----------
K
-----
A
-------
K
V
V
K
I
D
E
S
K
D
E
V
V
V
Q
F
IDAIVP
I
------
P
V
T
I
K
G
D
Y
V
R
L
-
I
S
K
L-----------------------------------------------------------------------------------------------------------------
20
SP3
38.72
8%
-54
- C3 -
1F4L
-
SYM_ECOLI
A:
[390-549]
----------------V
V
N
L
A
S
R
N
A
G
F
I
N
K
RFDG
V
L
A
S
E
L
A
D
P
Q
L
-
Y
K
T
F
T
D
A
---
A
E
V
I
G
E
-----
A
W
E
------------
S
---------
R
---------------------
E
---------------
F
------------
G
K
A
V
R
E
I
M
A
L
---------
A
D
L
A
N
R
Y
V
D
E
Q
A
P
W
V
V
A
K
Q
--------------------------
E
G
R
D
A
D
L
Q
A
I
C
S
M
G
-----------
I
N
L
F
-----
R
V
L
-
M
T
Y
-
L
----
K
-
P
V
----------
L
-----
P
-------
K
L
T
E
R
A
E
A
F
L
N
T
E
L
T
W
------
D
------
G
I
Q
Q
P
L
L
G
H
K
V
-
N
P
F
KAL
Y
N
R
I
D
M
R
Q
V
E
A
L
V
E
A
S
K
E---------------------------------------------------------------------------------------------
29
HHSearch
36.45
17%
-15
- C3 -
1N89
1
NLT2G_WHEAT
A:
[5-65]
---------------------------------------------------
S
Q
---
L
A
V
C
A
S
-----
A
I
L
------------
S
---------
G
---------------------
A
-------------
K
P
S
------------
G
E
C
C
G
N
L
R
A
------------------------------------------------------------------
Q
Q
G
-----------
C
F
C
Q
YA---
K
D
P
T
Y
G
Q
--------
Y
I
----------
R
-----
S
-------
P
H
A
R
D
T
L
T
S
C
G
L
A
V
P
-----------------------------------------------------------------------------------------------------------------------------------------------
12
SP3
35.85
11%
-28
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
--------------------------------------------
A
G
C
--
N
A
G
Q
---
L
T
V
C
T
G
-----
A
I
A
------------
G
---------
G
---------------------
A
----
R
---------
P
T
------------
A
A
C
C
S
S
L
R
A
---------------------------------------------------------
Q
-------
Q
G
C
F
-----------
C
Q
F
A
-----
K
D
P
-
R
Y
G
------
R
-
Y
V
----------
N
-----
S
-------
P
N
A
R
K
A
V
S
S
C
G
I
A
L
P
T
------
C
------
H
--------------------------------------------------------------------------------------------------------------------------------
3
Fugue
33.96
13%
-15
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
--------------------------------------------
A
G
C
N
A
--
G
Q
---
L
T
V
C
T
G
-----
A
I
A
------------
G
---------
G
---------------------
A
----
R
---------
P
T
------------
A
A
C
C
S
S
L
R
A
Q
---------
Q
G
C
F
-------------
C
Q
--------------------------
F
A
K
-------
D
P
R
Y
-----------
G
R
Y
V
--------------------------------
N
-----
S
-------
P
N
A
R
K
A
V
S
S
C
G
I
A
L
P
T
------
C
------
H
--------------------------------------------------------------------------------------------------------------------------------
16
SP3
33.93
11%
2
- C3 -
1FHU
-
MENC_ECOLI
A:
[1-320]
M
R
S
A
Q
V
Y
R
W
Q
I
P
M
DLK
T
R
D
G
L
Y
V
C
L
R
E
GE
R
E
G
W
G
E
I
S
P
L
P
G
F
S
Q
E
T
W
E
E
A
Q
S
V
---
L
L
A
W
V
N
-----
N
W
L
------------
A
---------
G
---------------------
D
----
C
--------
E
L
P
QM----------
P
S
V
A
F
G
V
S
C
A
---------
L
A
E
L
-------------
T
D
TLPQAANYRAA
P
L
C
N
G
DEK
V
A
K
V
K
V
G
L
Y
E
-------
A
V
R
D
-----------
G
M
V
V
-----
N
L
L
-
L
E
A
-
I
----
P
-
D
L
H
L
R
L
D
ANRAW
T
-----
P
-------
L
K
G
Q
Q
F
A
K
Y
V
N
P
D
Y
R
D
------
R
IA
F
L
E
E
P
C
K
T
R
D
D
S
R
A
F
A
R
E
T
G
I
A
I
A
W
D
ESLREPDFAF
V
A
E
E
GVR
A
V
V
I
KPTLTGS
L
E
K
V
R
E
Q
V
Q
A
A
H
A
L
G
L
T
A
V
I
S
S
SIES
S
L
G
L
T
Q
L
A
R
I
A
A
W
LTPDTIPGLDTLDLMQAQQVRRWPGST
L
P
V
V
E
VDALERLL
32
HHSearch
31.29
14%
-10
- C3 -
3OB4
-
?
A:
[429-486]
-----------------------------------------------------------------------------------------------------------------------------------------------
E
R
C
C
N
E
L
N
E
F
---------
E
---------------------------------------------
N
N
-------
Q
R
C
M
-----------
C
E
A
L
-----
Q
Q
I
-
M
E
N
-
Q
S
DRL
Q
-
G
R
----------
Q
Q
E
Q
Q
F
K
-------
R
E
L
R
N
L
P
Q
Q
C
G
L
R
A
P
Q
----------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90........100...
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
EPAPAPAPGEEACGKVVQDIMPCLHFVKGEEKEPSKECCSGTKKLSEEVKTTEQKREACKCIVRATKGISGIKNELVAEVPKKCDIKTTLPPITADFDCSKIQST
38
98.16
100%
-89
- C- -
M038
-
A:
[10-105]
---------
E
E
A
C
G
K
V
V
Q
D
I
M
P
C
L
H
F
V
K
G
E
E
K
E
P
S
K
E
C
C
S
G
T
K
K
L
S
E
E
V
K
T
T
E
Q
K
R
E
A
C
K
C
I
V
R
A
T
K
G
I
S
G
I
K
N
E
L
V
A
E
V
P
K
K
C
D
I
K
T
T
L
P
P
I
T
A
D
F
D
C
S
K
I
Q
S
T
35
94.65
100%
-92
- C- -
M035
-
A:
[10-105]
---------
E
E
A
C
G
K
V
V
Q
D
I
M
P
C
L
H
F
V
K
G
E
E
K
E
P
S
K
E
C
C
S
G
T
K
K
L
S
E
E
V
K
T
T
E
Q
K
R
E
A
C
K
C
I
V
R
A
T
K
G
I
S
G
I
K
N
E
L
V
A
E
V
P
K
K
C
D
I
K
T
T
L
P
P
I
T
A
D
F
D
C
S
K
I
Q
S
T
41
93.65
100%
-78
- C- -
M041
-
A:
[10-105]
---------
E
E
A
C
G
K
V
V
Q
D
I
M
P
C
L
H
F
V
K
G
E
E
K
E
P
S
K
E
C
C
S
G
T
K
K
L
S
E
E
V
K
T
T
E
Q
K
R
E
A
C
K
C
I
V
R
A
T
K
G
I
S
G
I
K
N
E
L
V
A
E
V
P
K
K
C
D
I
K
T
T
L
P
P
I
T
A
D
F
D
C
S
K
I
Q
S
T
39
28.57
100%
68
- C- -
M039
-
A:
[7-125]
E
P
A
P
A
P
A
P
G
E
E
A
C
G
K
V
V
Q
D
I
M
P
C
L
H
F
V
K
G
E
E
K
E
P
S
K
E
C
C
S
G
T
K
K
L
S
E
E
V
K
T
T
E
Q
K
R
E
A
C
K
C
I
V
R
A
T
K
G
I
S
G
I
K
N
E
L
V
A
E
V
P
K
K
C
D
I
K
T
T
L
P
P
I
T
A
D
F
D
C
S
K
I
Q
S
T