@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-05 )
SVAPAPAPGSEETCGTVVGALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGIVDSKLPPIDVNMDCKTLG
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------.........10--.......--.--20--.........------------30----------------.---------------------.-----------------.------------...------------...---40........50-----------........60.--------------.--...-...70----.-.----..-----.----------....80.....--.---..90........-100...---
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------SVAPAPAPGSE--ETCGTVV--G--A---LMPCLPFVQ------------G-----------------K---------------------E-----------------K------------EPS------------KGC---CSGAKRLDGETK-----------TGPQRVHACEC--------------I--QTA-MKTY-----S-D----ID-----G----------KLVSEVPKHCG--I---VDSKLPPIDVNM-DCKTLG---
21
HHSearch
93.44
31%
-95
- C3 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
I
T
C
G
Q
V
T
--
S
--
N
---
L
A
P
C
L
A
Y
L
R
------------
N
-----------------
T
---------------------
G
-------------------------------
P
L
------------
G
R
C
---
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
--------------
L
--
K
S
A
-
A
G
A
I
-----
S
-
G
----
I
N
-----
L
----------
G
K
A
A
G
L
P
S
T
C
G
--
V
---
N
I
P
Y
--
K
I
S
P
S
T
-
D
C
S
K
V
Q
---
20
HHSearch
92.02
30%
-78
* C3 *
1AFH
-
NLTP_MAIZE
A:
[1-93]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
I
S
C
G
Q
V
A
--
S
--
A
---
I
A
P
C
I
S
Y
A
R
------------
G
-----------------
Q
---------------------
G
-----------------
S
------------
G
P
S
------------
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
--------------
L
--
K
N
A
-
A
A
G
V
-----
S
-
G
----
L
N
-----
A
----------
G
N
A
A
S
I
P
S
K
C
G
--
V
---
S
I
P
Y
--
T
I
S
T
S
T
-
D
C
S
R
V
N
---
24
HHSearch
91.33
30%
-88
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
D
--
S
--
L
---
V
R
P
C
L
S
Y
V
Q
------------
G
-----------------
G
---------------------------------------
P
------------
G
P
S
------------
G
Q
C
---
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
--------------
L
--
K
G
I
-
A
R
G
I
-----
H
-
N
----
L
N
-----
E
----------
D
N
A
R
S
I
P
P
K
C
G
--
V
---
N
L
P
Y
--
T
I
S
L
N
I
-
D
C
S
R
V
----
11
SP3
90.82
27%
-91
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
I
S
C
G
Q
V
A
--
S
--
A
---
I
A
P
C
I
S
Y
A
R
------------
G
-----------------
Q
---------------------
G
-----------------
S
------------
G
P
S
------------
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
--------------
L
--
K
N
A
-
A
A
G
V
-----
S
-
G
----
L
N
-----
A
----------
G
N
A
A
S
I
P
S
K
C
G
--
V
-----
S
I
P
Y
T
I
S
T
S
T
-
D
C
S
R
V
N
---
25
HHSearch
86.49
26%
-94
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
Q
--
G
--
N
---
L
A
Q
C
I
G
F
L
Q
------------
K
-----------------
G
---------------------
G
------------------------------
V
V
P
------------
P
S
C
---
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
--------------
L
--
K
A
A
-
A
G
A
V
-----
R
-
G
----
I
N
-----
P
----------
N
N
A
E
A
L
P
G
K
C
G
--
V
---
N
I
P
Y
--
K
I
S
T
S
T
-
N
C
N
S
I
N
---
22
HHSearch
84.56
27%
-97
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
--
I
T
C
G
Q
V
S
--
S
--
S
---
L
A
P
C
I
P
Y
V
R
------------
G
-----------------
G
---------------------
G
------------------------------
A
V
P
------------
P
A
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
--------------
L
--
K
Q
L
-
S
A
S
V
-----
P
-
G
----
V
N
-----
P
----------
N
N
A
A
A
L
P
G
K
C
G
--
V
---
S
I
P
Y
--
K
I
S
A
S
T
-
N
C
A
T
V
K
---
3
Fugue
70.84
18%
-73
- C3 -
1PSY
-
2SS_RICCO
A:
[1-125]
--------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
--
Q
Q
C
R
Q
E
V
QR
K
--
D
---
L
S
S
C
E
R
Y
L
R
------------
Q
-----------------
S
S
S
R
R
S
T
GEEVLRMPGDENQQQ
E
-----------------
S
------------
Q
Q
L
------------
Q
Q
C
---
C
N
Q
V
K
Q
V
R
D
E
-------------------
C
Q
C
E
A
--------------
I
--
K
Y
I
-
A
E
D
Q
-----
I
-
Q
----
Q
G
-----
Q
LHGEE
S
E
R
V
A
Q
R
A
G
E
I
V
S
S
C
G
--
V
---
R
C
M
R
Q
T
R
T
N
-------------
8
Fugue
64.61
17%
-56
- C3 -
4HR1
-
?
A:
[3-120]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
N
G
A
--
Q
T
V
I
Q
K
I
--
S
--
W
---
L
R
T
A
I
A
F
L
K
G
Y
M
E
T
T
------
G
-----------------
A
---------------------
T
-----------------
K
------------
K
E
L
------------
E
Q
V
---
E
K
L
K
E
R
V
D
E
I
A
T
-----------
A
V
N
W
D
V
Y
A
Q
Y
A
R
GDFNLLS
D
D
E
Y
K
E
I
--
Q
K
A
-
L
L
V
L
-----
E
-
D
----
I
K
-----
E
----------
Q
I
I
V
E
M
L
R
-
V
G
--
L
---
A
Q
G
Q
M
G
T
L
K
I
S
D
-
Y
L
D
S
L
D
S--
26
HHSearch
59.74
25%
-84
- C3 -
2RKN
2
DIRL1_ARATH
A:
[2-74]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
--
D
L
C
G
M
S
Q
--
D
--
E
---
L
N
E
C
K
P
A
V
S
------------
K
-----------------
E
---------------------
N
-----------------
P
T-----------
S
P
S
------------
Q
P
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
--------------
K
--
N
S
P
W
L
G
S
F
-------
G
----
V
D
-----
P
----------
E
L
A
S
A
L
P
K
Q
C
G
--
L
---
A
N
A
-------------------
2
Fugue
58.90
26%
-73
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
--
D
L
C
G
M
S
Q
--
D
--
E
---
L
N
E
C
K
P
A
V
S
------------
K
-----------------
E
N--------------------
P
-----------------
T
------------
S
P
S
------------
Q
P
C
---
C
T
A
L
Q
H
A
D
-------------------
F
A
C
L
C
G
Y
--------------
K
--
N
S
P
-
W
L
G
S
-----
F
-
G
----
V
D
-----
P
----------
E
L
A
S
A
L
P
K
Q
C
G
--
L
-----------
A
N
A
P
-
T
C
-------
7
Fugue
52.25
21%
-73
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
P
Y
G
R
G
R
T
E
--
S
G
C
Y
Q
Q
M
--
E
--
E
A
EM
L
N
H
C
G
M
Y
L
M
------------
K
-----------------
N
---------------------
L
-----------------
G
------------
E
R
S
QVSPR
M
R
E
E
D
H
K
Q
L
C
---
C
M
Q
L
K
N
L
D
E
K
C
M
-------------------
C
P
A
--------------
I
--
M
M
M
-
L
N
E
P
MWIRM
R
-
D
----
Q
V
-----
M
----------
S
M
A
H
N
L
P
I
E
C
N
--
L
---
M
S
Q
P
----------
C
Q
M
-----
19
SP3
50.69
15%
-83
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
P
Y
G
R
G
R
T
E
--
S
G
C
Y
Q
Q
M
--
E
--
E
A
EM
L
N
H
C
G
M
Y
L
M
KNLGERSQVSPR
M
-----------------
R
---------------------
E
-----------------
E
------------
D
H
K
------------
Q
L
C
---
C
M
Q
L
K
N
L
-------------------
D
E
K
C
M
C
P
A
--------------
I
--
M
M
M
-
L
N
E
P
-----
M
-
W
----
I
R
MR
D
Q
V
M
----------
S
M
A
H
N
L
P
I
E
C
N
--
L
----
M
S
Q
P
C
Q
M
--------------
30
HHSearch
47.66
18%
-111
- C3 -
1S6D
-
2SS8_HELAN
A:
[19-96]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
--
M
---
L
N
H
C
G
M
Y
L
M
------------
K
-----------------
N
---------------------
L
-----------------
G
ERSQVSPR
M
R
E
E
D
H
K
------------
Q
L
C
---
C
M
Q
L
K
N
L
D
E
-------------------
K
C
M
C
P
A
--------------
I
--
M
M
M
-
L
N
E
P
-----
M
W
I
RMR
D
Q
V
-----
M
----------
S
M
A
H
N
L
P
I
E
C
N
--
L
-------------------------
5
Fugue
46.74
14%
-49
- C3 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
----------------------------------------------------------------------------------------------------------------------------------------------------------GP
M
R
R
E
R
G
R
Q
G
D
S
--
S
S
C
E
R
Q
V
--
D
--
R
VN-
L
K
P
C
E
Q
H
I
M
------------
Q
-----------------
R
---------------------
I
MGEQEQYDSYDIRSTR
S
S
------------
D
Q
Q
------------
Q
R
C
---
C
D
E
L
N
E
M
E
N
T
Q
G
C
M
C
--------
E
A
L
Q
Q
I
M
E
N
Q
C
--------------
D
--
R
L
Q
-
D
R
Q
M
-----
V
-
Q
----
Q
F
-----
K
----------
R
E
L
M
S
L
P
Q
Q
C
N
--
F
---
R
A
P
Q
R
C
D
L
D
V
S
G
G
R
C
S
------
10
Fugue
44.78
16%
-35
- C3 -
1V74
-
IMMD_ECOLX
B:
[1-87]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
K
M
--
A
--
M
---
I
D
L
A
K
L
F
L
A
------------
S
-----------------
K
---------------------
I
T
A
---------------
I
------------
E
F
S
------------
E
R
I
---
C
V
E
R
R
R
L
Y
G
V
K
D
-----------
L
S
P
N
I
L
N
C
G
E
E
--------------
L
--
F
M
A
-
A
E
R
F
-----
E
-
P
----
D
A
-----
D
----------
R
A
N
Y
E
I
------------
D
D
N
G
L
K
V
E
V
R
S
-
I
L
E
K
F
K
L--
6
Fugue
42.50
19%
-2
- C2 -
1E44
1
B:
[1-96]
-------------------------------------------------------------------------------------------------------------------------------------------------------G
F
K
D
Y
G
H
D
Y
H
P
A
P
K
T
E
--
N
I
K
G
L
G
---------------
D
L
K
P
------------
G
-----------------
I
---------------------
P
-----------------
K
------------
T
P
K
------------
Q
N
G
---
G
G
K
R
K
R
W
T
G
D
--------------
K
G
R
K
I
Y
E
W
D
S
--------------
Q
--
H
G
E
-
L
E
G
Y
-----
R
-
A
----
S
D
-----
G
----------
Q
H
L
G
S
F
D
P
K
T
G
--------
N
Q
L
K
G
P
D
P
K
R
-
N
I
K
K
Y
L
---
14
SP3
39.99
15%
-41
- C3 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
L
G
L
G
D
A
A
L
I
K
D
N
H
V
A
--
A
A
G
S
---
V
V
D
A
L
R
A
V
R
----------------------------------------------------
N
-----------------
A
------------
A
P
D
------------
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
--------------
R
--
D
S
R
-
A
P
T
V
M
L
E
S
S
G
-
G
----
L
S
-----
L
----------
Q
T
A
A
T
Y
-
A
E
T
G
--
V
D
Y
L
A
V
G
A
L
T
H
S
V
R
V
L
-
D
---
I
G
L
D
M
16
SP3
39.50
15%
-40
- C3 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
L
G
L
G
D
A
A
L
I
K
D
N
H
V
A
--
A
A
G
S
---
V
V
D
A
L
R
A
V
R
------------
N
---------------------------------------------------------
A
------------
A
P
D
------------
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
--------------
R
--
D
S
R
-
A
P
T
V
M
L
E
S
S
G
-
G
----
L
S
-----
L
----------
Q
T
A
A
T
Y
-
A
E
T
G
--
V
D
Y
L
A
V
G
A
L
T
H
S
V
R
V
L
-
D
---
I
G
L
D
M
28
HHSearch
39.23
19%
-62
- C3 -
1N89
1
NLT2G_WHEAT
A:
[5-65]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
--
Q
---
L
A
V
C
A
S
A
I
L
------------
S
-----------------
G
---------------------
A
------------------------------
K
P
S
------------
G
E
C
---
C
G
N
L
R
A
----------------------
Q
Q
G
C
F
C
--------------
Q
YA
K
D
P
T
Y
G
Q
--------
Y
----
I
R
-----
S
----------
P
H
A
R
D
T
L
T
S
C
G
--
L
---
A
V
P
-------------------
18
SP3
38.59
9%
-36
- C3 -
1S7A
-
LA_HUMAN
A:
[1-103]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
E
N
G
D
N
--
E
K
M
A
A
L
E
--
A
--
K
---
I
C
H
Q
I
E
Y
Y
F
------------
G
DFNLPRD
K
F
L
K
E
Q
I
K
LD
E
---------------------
G
-----------------
W
------------
V
P
L
-------------------
E
I
M
I
K
F
N
R
L
N
R
-----------
L
T
T
D
F
N
V
I
V
E
A
--------------
L
--
S
K
S
-
K
A
E
L
-----
M
-
E
----
I
S
-----
E
----------
D
---------
K
T
K
I
---
R
R
S
P
S
K
P
L
P
E
V
T
-
D
E
-------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90........100...
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
SVAPAPAPGSEETCGTVVGALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGIVDSKLPPIDVNMDCKTLG
34
98.92
100%
-114
- C- -
M034
-
A:
[11-105]
----------
E
E
T
C
G
T
V
V
G
A
L
M
P
C
L
P
F
V
Q
G
K
E
K
E
P
S
K
G
C
C
S
G
A
K
R
L
D
G
E
T
K
T
G
P
Q
R
V
H
A
C
E
C
I
Q
T
A
M
K
T
Y
S
D
I
D
G
K
L
V
S
E
V
P
K
H
C
G
I
V
D
S
K
L
P
P
I
D
V
N
M
D
C
K
T
L
G
35
98.65
100%
-117
- C- -
M035
-
A:
[11-122]
----------
E
E
T
C
G
T
V
V
G
A
L
M
P
C
L
P
F
V
Q
G
K
E
K
E
P
S
K
G
C
C
S
G
A
K
R
L
D
G
E
T
K
T
G
P
Q
R
V
H
A
C
E
C
I
Q
T
A
M
K
T
Y
S
D
I
D
G
K
L
V
S
E
V
P
K
H
C
G
I
V
D
S
K
L
P
P
I
D
V
N
M
D
C
K
T
L
G
39
94.95
100%
-106
- C- -
M039
-
A:
[11-105]
----------
E
E
T
C
G
T
V
V
G
A
L
M
P
C
L
P
F
V
Q
G
K
E
K
E
P
S
K
G
C
C
S
G
A
K
R
L
D
G
E
T
K
T
G
P
Q
R
V
H
A
C
E
C
I
Q
T
A
M
K
T
Y
S
D
I
D
G
K
L
V
S
E
V
P
K
H
C
G
I
V
D
S
K
L
P
P
I
D
V
N
M
D
C
K
T
L
G