@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-05 )
ESAVSCGTVISDMTPCVGYLTSGKGKPAPNCCGGVKKLAGLATTTPTRRAVCGCLKQAYSQVPNVNSAAVSGLPGACGVNLPFKISLQTNCNTIN
Atome Classification :
(20 SA)
---------------.....---....10.---.......20--------------------.------------.---.----.--.------------------..-----------.---.30........40........50.......-.60----------..-------.-------.---------.-------.----------.----------..70..--......80...--------------.....90....--------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------ESAVS---CGTVISD---MTPCVGYL---------------------T------------S---G----K--G------------------KP-----------A---PNCCGGVKKLAGLATTTPTRRAVCGCLKQA-YS-----------QV-------P-------N---------V-------N----------S----------AAVSGL--PGACGVNLPFK--------------ISLQTNCNTIN--------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
93.08
48%
-138
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
------------------
M
T
---
C
G
Q
V
Q
G
N
---
L
A
Q
C
I
G
F
L
---------------------
Q
------------
K
---
G
-------
G
------------------
V
V
-----------
P
---
P
S
C
C
T
G
V
K
N
I
L
N
S
S
R
T
T
A
D
R
R
A
V
C
S
C
L
K
A
A
-
A
G
-----------
A
V
-------
R
-------
G
---------
I
-------
N
----------
P
----------
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
--------------
I
S
T
S
T
N
C
N
S
I
N
--------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
92.65
44%
-145
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
-----------------
A
I
T
---
C
G
Q
V
T
S
N
---
L
A
P
C
L
A
Y
L
---------------------
R
------------
N
---
T
----
G
----------------------
P
-----------
L
---
G
R
C
C
G
G
V
K
A
L
V
N
S
A
R
T
T
E
D
R
Q
I
A
C
T
C
L
K
S
A
-
A
G
-----------
A
I
-------
S
-------
G
---------
I
-------
N
----------
L
----------
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
Y
K
--------------
I
S
P
S
T
D
C
S
K
V
Q
--------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
86.20
47%
-138
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
-----------------
M
I
T
---
C
G
Q
V
S
S
S
---
L
A
P
C
I
P
Y
V
---------------------
R
------------
G
---
G
-------
G
------------------
A
V
-----------
P
---
P
A
C
C
N
G
I
R
N
V
N
N
L
A
R
T
T
P
D
R
Q
A
A
C
N
C
L
K
Q
L
-
S
A
-----------
S
V
-------
P
-------
G
---------
V
-------
N
----------
P
----------
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
--------------
I
S
A
S
T
N
C
A
T
V
K
--------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
85.30
41%
-123
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
-----------------
A
I
S
---
C
G
Q
V
A
S
A
---
I
A
P
C
I
S
Y
A
---------------------
R
------------
G
---
Q
----
G
--
S
------------------
G
P
-----------
S
---
A
G
C
C
S
G
V
R
S
L
N
N
A
A
R
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
-----------
G
V
-------
S
-------
G
---------
L
-------
N
----------
A
----------
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
--------------
I
S
T
S
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------------------------------
11
SP3
84.69
40%
-126
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-----------------
A
I
S
---
C
G
Q
V
A
S
A
---
I
A
P
C
I
S
Y
A
---------------------
R
------------
G
---
Q
----
G
--
S
------------------
G
P
-----------
S
---
A
G
C
C
S
G
V
R
S
L
N
N
A
A
R
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
-----------
G
V
-------
S
-------
G
---------
L
-------
N
----------
A
----------
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
--------------
I
S
T
S
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
83.61
38%
-124
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
------------------
I
D
---
C
G
H
V
D
S
L
---
V
R
P
C
L
S
Y
V
---------------------
Q
------------
G
---
G
-------
P
------------------
G
P
-----------
S
---
G
Q
C
C
D
G
V
K
N
L
H
N
Q
A
R
S
Q
S
D
R
Q
S
A
C
N
C
L
K
G
I
-
A
R
-----------
G
I
-------
H
-------
N
---------
L
-------
N
----------
E
----------
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
--------------
I
S
L
N
I
D
C
S
R
V
---------------------------------------------------------------------------------------------------------------------------------------
39
HHSearch
54.54
19%
-133
- C2 -
1W2Q
-
CONG_ARAHY
A:
[22-114]
---------------------------
R
V
N
---
L
K
P
C
E
Q
H
I
---------------------
M
------------
Q
R
I
M
G
----
E
QE
Q
Y-----------------
D
S
YDIRSTR
S
S
D
Q
Q
---
Q
R
C
C
D
E
L
N
E
M
E
-----
N
-
T
Q
G
C
M
C
E
A
L
Q
Q
I
-
M
E
-----------
N
Q
-------
C
DRLQ---
D
---------
R
-------
Q
MV
Q
Q
F
-----
K
----------
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
54.53
22%
-118
- C2 -
1SM7
-
?
A:
[13-101]
----------------------------
Q
H
---
L
R
A
C
Q
Q
W
I
---------------------
R
------------
Q
QLA
G
----
S
--
P
F
S
E
NQWGPQQGP------
S
L
-----------
R
---
E
Q
C
C
N
E
L
Y
Q
E
--------
D
Q
V
C
V
C
P
T
L
K
Q
A
-
A
K
-----------
S
V
-------
R
VQ-----
G
Q--------
H
GPFQST
R
I
----------
Y
----------
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
53.70
14%
-143
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-110]
----------------------------
N
P
---
L
P
S
C
R
W
Y
V
---------------------
T
S
R
TC--------
G
---
I
----
G
--
P
------------------
R
L
P
W
P
E
L
------
K
---
R
R
C
C
R
E
L
A
D
I
--------
P
A
Y
C
R
C
T
A
L
S
I
L
-
M
D
-----------
G
A
-------
I
P
P
G
PDAQ
L
E
G
R
------
L
-------
E
D
LPGCP
R
E
V
Q
R
----------
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
52.41
17%
-140
* C2 *
1HSS
-
IAA1_WHEAT
A:
[15-106]
----------------------------
P
A
---
L
P
A
C
R
P
L
L
---------------------
R
------------
L
Q
C
N
G
----
S
--
Q
------------------
V
P
E
A
V
--------
L
---
R
D
C
C
Q
Q
L
A
H
I
S
--------
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
-----------
S
M
-------
Y
K
E
H-----GAFPRCR
R
E
V
-------
V
----------
K
----------
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
V
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
52.40
16%
-103
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
----------P
Y
G
R
G
R
T
E
S
G
---
C
Y
Q
Q
M
E
E
A
EM
L
N
H
C
G
M
Y
L
---------------------
M
KNLGERSQVSPR
M
---
R
----
E
--
E
------------------
D
H
-----------
K
---
Q
L
C
C
M
Q
L
K
N
L
--------
D
E
K
C
M
C
P
A
I
M
M
M
-
L
N
-----------
E
P
-------
M
-------
W
---------
I
-------
R
MR
D
Q
V
-----
M
----------
S
M
A
H
N
L
--
P
I
E
C
N
L
M
---------------------
S
Q
P
C
Q
M
----------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
51.06
22%
-111
- C2 -
3OB4
-
?
A:
[428-485]
-----------------------------------------------------------------------------------------------------------------------
Q
---
E
R
C
C
N
E
L
N
E
F
E
N
------
N
Q
R
C
M
C
E
A
L
Q
Q
I
-
M
E
-----------
N
Q
S
DRL---
Q
-------
G
---------
R
-------
Q
Q
E
Q
Q
F
-----
K
----------
R
E
L
R
N
L
--
P
Q
Q
C
G
L
R
A
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
50.98
21%
-101
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
---A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
---
C
R
Q
E
V
Q
R
KD-
L
S
S
C
E
R
Y
L
R
Q
S
S
S
R
R
S
T
GEEVLRMPGDEN
Q
------------
Q
---
Q
----
E
--
S
------------------
Q
Q
-----------
L
---
Q
Q
C
C
N
Q
V
K
Q
V
--------
R
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
-----------
D
Q
-------
I
-------
Q
---------
Q
-------
G
----------
Q
LHGEE
S
E
R
V
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
R
-
C
M
R
-----------------
Q
T
R
T
N
-----------------------------------------------------------------------------------------------------------------------------------------
15
SP3
50.96
13%
-103
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
----------P
Y
G
R
G
R
T
E
S
G
---
C
Y
Q
Q
M
E
E
A
EM
L
N
H
C
G
M
Y
L
---------------------
M
KNLGERSQVSPR
M
---
R
----
E
--
E
------------------
D
H
-----------
K
---
Q
L
C
C
M
Q
L
K
N
L
--------
D
E
K
C
M
C
P
A
I
M
M
M
-
L
N
-----------
E
P
-------
M
-------
W
---------
I
-------
R
MR
D
Q
V
-----
M
----------
S
M
A
H
N
L
--
P
I
E
C
N
L
M
---------------------
S
Q
P
C
Q
M
----------------------------------------------------------------------------------------------------------------------------------------
13
SP3
47.65
12%
-118
- C2 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
-----------MCYP
G
Q
A
F
Q
-------
V
P
A
---
L
P
A
C
R
P
L
L
---------------------
R
------------
L
Q
C
N
G
----
S
--
Q
------------------
V
P
-----------
E
A
V
L
R
D
C
C
Q
Q
L
A
H
I
--------
S
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
-----------
S
M
Y
K
E
HGAF
P
-------
R
---------
C
-------
R
R
E
V
V
------
K
----------
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
V
----------------
D
A
S
G
D
G
A
Y
V
C
K
D
V
A
A
YPDA-----------------------------------------------------------------------------------------------------------------------------
32
HHSearch
47.54
20%
-81
- C2 -
1PSY
-
2SS_RICCO
A:
[25-121]
----------------------------
K
D
---
L
S
S
C
E
R
Y
L
---------------------
R
------------
Q
---
S
S
S
R
-
R
--
S
T
GEEVLRMPGDENQQQES
Q
Q
-----------
L
---
Q
Q
C
C
N
Q
V
K
Q
V
--------
R
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
-----------
D
Q
-------
I
Q
Q
G
QLH-
G
EE
S
E
-----
R
-------
V
----------
A
----------
Q
R
A
G
E
I
--
V
S
S
C
G
V
--
R
C
M
--------------
R
Q
-----------------------------------------------------------------------------------------------------------------------------------------------
41
HHSearch
46.58
18%
-102
- C2 -
1S6D
-
2SS8_HELAN
A:
[19-97]
----------------------------
E
M
---
L
N
H
C
G
M
Y
L
---------------------
M
------------
K
---
N
LGER
S
--
Q
VSPR
M
R
E
E
----------
D
H
-----------
K
---
Q
L
C
C
M
Q
L
K
N
L
D
--------
E
K
C
M
C
P
A
I
M
M
M
-
L
N
-----------
E
P
-------
M
W------
I
RMR
D
-----
Q
-------
V
----------
M
----------
S
M
A
H
N
L
--
P
I
E
C
N
L
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
46.04
19%
-101
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-75]
----------------
A
I
D
L
---
C
G
M
S
Q
D
E
---
L
N
E
C
K
P
A
V
---------------------
S
------------
K
---
E
----
N
--
P
T-----------------
S
P
-----------
S
---
Q
P
C
C
T
A
L
Q
H
A
--------
D
F
A
C
L
C
G
Y
K
N
S
P
W
L
G
-----------
S
F
---------------
G
---------
V
-------
D
----------
P
----------
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------
18
SP3
45.36
13%
-70
- C2 -
1A0P
-
?
?:
[3-292]
Q
D
L
A
R
I
E
Q
F
L
D
A
L
W
L
E
K
N
L
A
E
N
T
L
N
A
Y
R
R
D
---
L
S
M
M
V
E
W
L
---------------------
H
------------
H
---
R
----
G
--
L
------------------
T
L
-----------
A
---
T
A
Q
S
D
D
L
Q
A
L
L
A
E
R
L
S
S
A
R
L
L
S
A
V
R
R
L
F
Q
Y
-
L
Y
R
E
KFREDDPSA
H
L
-------
K
-------
D
---------
L
-------
S
----------
E
----------
A
Q
V
E
R
L
--
L
Q
A
P
L
I
D
Q
P
L
E
L
R
D
K
A
M
L
E
V
L
Y
A
TG
L
R
V
S
-
E
L
V
G
L
T
MSDISLRQG
V
V
R
V
I
G
KGNK
E
R
L
V
P
LG
E
E
A
V
Y
W
L
E
T
Y
L
E
HG
R
P
W
L
L
N
GVSIDVLFPSQRAQQMT
R
Q
T
F
W
H
R
I
K
H
Y
A
V
L
A
GIDSEKLS
P
H
V
L
R
H
A
F
A
T
H
L
L
N
HGADLRVVQMLLSDLS
T
T
Q
I
Y
T
H
V
A
T
E
R
L
R
Q
L
H
Q
2
Fugue
42.46
19%
-81
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------
A
I
D
L
---
C
G
M
S
Q
D
E
---
L
N
E
C
K
P
A
V
---------------------
S
K-----------
E
---
N
----
P
--
T
------------------
S
P
-----------
S
---
Q
P
C
C
T
A
L
Q
H
A
--------
D
F
A
C
L
C
G
Y
K
N
S
P
-
W
L
-----------
G
S
-------
F
-------
G
---------
V
-------
D
----------
P
----------
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
--------------------
P
T
C
------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(5 SA)
.........10........20........30........40........50........60........70........80........90....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ESAVSCGTVISDMTPCVGYLTSGKGKPAPNCCGGVKKLAGLATTTPTRRAVCGCLKQAYSQVPNVNSAAVSGLPGACGVNLPFKISLQTNCNTIN
46
98.31
100%
-146
- C- -
M046
-
A:
[1-116]
E
S
A
V
S
C
G
T
V
I
S
D
M
T
P
C
V
G
Y
L
T
S
G
K
G
K
P
A
P
N
C
C
G
G
V
K
K
L
A
G
L
A
T
T
T
P
T
R
R
A
V
C
G
C
L
K
Q
A
Y
S
Q
V
P
N
V
N
S
A
A
V
S
G
L
P
G
A
C
G
V
N
L
P
F
K
I
S
L
Q
T
N
C
N
T
I
N
44
35.05
100%
5
- C- -
M044
-
A:
[3-135]
E
S
A
V
S
C
G
T
V
I
S
D
M
T
P
C
V
G
Y
L
T
S
G
K
G
K
P
A
P
N
C
C
G
G
V
K
K
L
A
G
L
A
T
T
T
P
T
R
R
A
V
C
G
C
L
K
Q
A
Y
S
Q
V
P
N
V
N
S
A
A
V
S
G
L
P
G
A
C
G
V
N
L
P
F
K
I
S
L
Q
T
N
C
N
T
I
N
45
34.05
100%
2
- C- -
M045
-
A:
[3-135]
E
S
A
V
S
C
G
T
V
I
S
D
M
T
P
C
V
G
Y
L
T
S
G
K
G
K
P
A
P
N
C
C
G
G
V
K
K
L
A
G
L
A
T
T
T
P
T
R
R
A
V
C
G
C
L
K
Q
A
Y
S
Q
V
P
N
V
N
S
A
A
V
S
G
L
P
G
A
C
G
V
N
L
P
F
K
I
S
L
Q
T
N
C
N
T
I
N
42
32.87
100%
-13
- C- -
M042
-
A:
[3-121]
E
S
A
V
S
C
G
T
V
I
S
D
M
T
P
C
V
G
Y
L
T
S
G
K
G
K
P
A
P
N
C
C
G
G
V
K
K
L
A
G
L
A
T
T
T
P
T
R
R
A
V
C
G
C
L
K
Q
A
Y
S
Q
V
P
N
V
N
S
A
A
V
S
G
L
P
G
A
C
G
V
N
L
P
F
K
I
S
L
Q
T
N
C
N
T
I
N
43
32.00
100%
-6
- C- -
M043
-
A:
[3-121]
E
S
A
V
S
C
G
T
V
I
S
D
M
T
P
C
V
G
Y
L
T
S
G
K
G
K
P
A
P
N
C
C
G
G
V
K
K
L
A
G
L
A
T
T
T
P
T
R
R
A
V
C
G
C
L
K
Q
A
Y
S
Q
V
P
N
V
N
S
A
A
V
S
G
L
P
G
A
C
G
V
N
L
P
F
K
I
S
L
Q
T
N
C
N
T
I
N