@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-05 )
ESAISCGTVTSDLTQCVGYLTSGKGKPTPSCCGGVKKLADLASTTPARRAVCGCLKQAYSQFPNVNSAAVSGLPGACGVNLPFKISLQTNCNTIN
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------...-..---....10--.---.......20------------.---.----.---.------------------.-----.-----------.---.30---........40..-----------......50.......-.60----------..---------------.-------.----.-------.----------...70..--......80...--------------.....90....--------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------ESA-IS---CGTVTS--D---LTQCVGYLT------------S---G----K---G------------------K-----P-----------T---PSC---CGGVKKLADLAS-----------TTPARRAVCGCLKQA-YS-----------QF---------------P-------N----V-------N----------SAAVSGL--PGACGVNLPFK--------------ISLQTNCNTIN--------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
93.39
51%
-139
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
---
C
G
Q
V
Q
G
--
N
---
L
A
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F
L
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------------
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---
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--------
G
------------------
V
-----
V
-----------
P
---
P
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C
---
C
T
G
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N
I
L
N
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-----------
T
T
A
D
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A
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C
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C
L
K
A
A
-
A
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-----------
A
V
---------------
R
-------
G
----
I
-------
N
----------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
--------------
I
S
T
S
T
N
C
N
S
I
N
--------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
90.41
46%
-148
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-
I
T
---
C
G
Q
V
T
S
--
N
---
L
A
P
C
L
A
Y
L
R
------------
N
---
T
----
G
----------------------------
P
-----------
L
---
G
R
C
---
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
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T
C
L
K
S
A
-
A
G
-----------
A
I
---------------
S
-------
G
----
I
-------
N
----------
L
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
Y
K
--------------
I
S
P
S
T
D
C
S
K
V
Q
--------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
87.34
47%
-136
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-
I
T
---
C
G
Q
V
S
S
--
S
---
L
A
P
C
I
P
Y
V
R
------------
G
---
G
--------
G
------------------
A
-----
V
-----------
P
---
P
A
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
K
Q
L
-
S
A
-----------
S
V
---------------
P
-------
G
----
V
-------
N
----------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
--------------
I
S
A
S
T
N
C
A
T
V
K
--------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
85.35
40%
-118
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-
I
S
---
C
G
Q
V
A
S
--
A
---
I
A
P
C
I
S
Y
A
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------------
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---
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----
G
---
S
------------------
G
-----
P
-----------
S
---
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
-----------
G
V
---------------
S
-------
G
----
L
-------
N
----------
A
G
N
A
A
S
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--
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S
K
C
G
V
S
I
P
Y
T
--------------
I
S
T
S
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------------------------------
11
SP3
83.97
38%
-127
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-
I
S
---
C
G
Q
V
A
S
--
A
---
I
A
P
C
I
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Y
A
R
------------
G
---
Q
----
G
---
S
------------------
G
-----
P
-----------
S
---
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
-----------
G
V
---------------
S
-------
G
----
L
-------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
--------------
I
S
T
S
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
83.40
38%
-133
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
---
C
G
H
V
D
S
--
L
---
V
R
P
C
L
S
Y
V
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------------
G
---
G
--------
P
------------------
G
-----
P
-----------
S
---
G
Q
C
---
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
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Q
S
A
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K
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I
-
A
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-----------
G
I
---------------
H
-------
N
----
L
-------
N
----------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
--------------
I
S
L
N
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S
R
V
---------------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
53.60
16%
-138
- C2 -
1W2Q
-
CONG_ARAHY
A:
[22-114]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
--
N
---
L
K
P
C
E
Q
H
I
M
------------
Q
---
R
I
MG-
E
QE-
Q
Y-----------------
D
-----
S
YDIRSTR
S
S
D
Q
Q
---
Q
R
C
---
C
D
E
L
N
E
M
E
----------------
N
-
T
Q
G
C
M
C
E
A
L
Q
Q
I
-
M
E
-----------
N
Q
---------------
C
DRLQ---
D
----
R
-------
Q
MV
Q
Q
F
-----
K
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
53.03
17%
-140
* C2 *
1HSS
-
IAA1_WHEAT
A:
[15-104]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
--
A
---
L
P
A
C
R
P
L
L
R
------------
L
---
Q
C
N
G-
S
---
Q
------------------
V
-----
P
E
A
V
--------
L
---
R
D
C
---
C
Q
Q
L
A
H
I
S
-------------------
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
-----------
S
M
---------------
Y
K
E
HGAFP
R
CR
R
E
V
-------
V
----------
K
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
13
SP3
52.94
13%
-129
- C2 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------MCYP
G
Q
A
-
F
Q
-------
V
P
--
A
---
L
P
A
C
R
P
L
L
R
------------
L
Q
C
N
G
----
S
---
Q
------------------
V
-----
P
-----------
E
A
V
L
R
D
C
---
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
-----------
S
M
Y
K
E
HGAF--------
P
-------
R
----
C
-------
R
R
E
V
V
------
K
L
T
A
A
S
I
--
T
A
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C
R
L
P
I
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V
----------------
D
A
S
G
D
G
A
Y
V
C
K
D
V
A
A
YPDA-----------------------------------------------------------------------------------------------------------------------------
27
HHSearch
52.69
22%
-106
- C2 -
2RKN
2
DIRL1_ARATH
A:
[2-75]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
D
L
---
C
G
M
S
Q
D
--
E
---
L
N
E
C
K
P
A
V
S
------------
K
---
E
----
N
---
P
T-----------------
S
-----
P
-----------
S
---
Q
P
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
S
P
W
L
G
-----------
S
F
-----------------------
G
----
V
-------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
52.33
15%
-149
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-110]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
---
L
P
S
C
R
W
Y
V
T
S
R
TC--------
G
---
I
----
G
---
P
------------------
R
-----
L
P
W
P
E
L
------
K
---
R
R
C
---
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
S
I
L
-
M
D
-----------
G
A
---------------
I
P
P
G
PDAQ
L
E
G
R
-
L
-------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------
19
SP3
50.45
14%
-98
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
----------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
-
S
G
---
C
Y
Q
Q
M
E
--
E
A
EM
L
N
H
C
G
M
Y
L
M
KNLGERSQVSPR
M
---
R
----
E
---
E
------------------
D
-----
H
-----------
K
---
Q
L
C
---
C
M
Q
L
K
N
L
-------------------
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E
K
C
M
C
P
A
I
M
M
M
-
L
N
-----------
E
P
---------------
M
-------
W
----
I
-------
R
MR
D
Q
V
-----
M
S
M
A
H
N
L
--
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I
E
C
N
L
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---------------------
S
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P
C
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M
----------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
50.35
20%
-120
- C2 -
1SM7
-
?
A:
[13-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
H
---
L
R
A
C
Q
Q
W
I
R
------------
Q
---
Q
----
L
AG
S
P
F
S
E
NQWGPQQGP------
S
-----
L
-----------
R
---
E
Q
C
---
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
K
Q
A
-
A
K
-----------
S
V
---------------
R
VQ-----
G
Q---
H
GPFQST
R
I
----------
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
48.60
22%
-117
- C2 -
3OB4
-
?
A:
[428-486]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
---
E
R
C
---
C
N
E
L
N
E
F
E
N
-----------------
N
Q
R
C
M
C
E
A
L
Q
Q
I
-
M
E
-----------
N
Q
S
DRL-----------
Q
-------
G
----
R
-------
Q
Q
E
Q
Q
F
-----
K
R
E
L
R
N
L
--
P
Q
Q
C
G
L
R
A
P
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------
15
SP3
48.39
13%
-83
- C2 -
1A0P
-
?
?:
[3-292]
------------------------------------------------------------------------------------------------------------------------------------------------------Q
D
L
A
R
I
E
Q
F
L
D
A
L
W
L
E
K
N
-
L
A
E
N
T
L
N
A
Y
R
R
--
D
---
L
S
M
M
V
E
W
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H
------------
H
---
R
----
G
---
L
------------------
T
-----
L
-----------
A
---
T
A
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S
D
D
L
Q
A
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L
A
E
R
L
-----------
S
S
A
R
L
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S
A
V
R
R
L
F
Q
Y
-
L
Y
R
E
KFREDDPSA
H
L
---------------
K
-------
D
----
L
-------
S
----------
E
A
Q
V
E
R
L
--
L
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A
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D
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P
L
E
L
R
D
K
A
M
L
E
V
L
Y
A
TG
L
R
V
S
-
E
L
V
G
L
T
MSDISLRQG
V
V
R
V
I
G
KGNK
E
R
L
V
P
LG
E
E
A
V
Y
W
L
E
T
Y
L
E
HG
R
P
W
L
L
N
GVSIDVLFPSQRAQQMT
R
Q
T
F
W
H
R
I
K
H
Y
A
V
L
A
GIDSEKLS
P
H
V
L
R
H
A
F
A
T
H
L
L
N
HGADLRVVQMLLSDLS
T
T
Q
I
Y
T
H
V
A
T
E
R
L
R
Q
L
H
Q
34
HHSearch
47.52
21%
-85
- C2 -
1PSY
-
2SS_RICCO
A:
[25-122]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
D
---
L
S
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C
E
R
Y
L
R
------------
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---
S
S
S
R
-
R
---
S
T
GEEVLRMPGDENQQQES
Q
-----
Q
-----------
L
---
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Q
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
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C
E
A
I
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Y
I
-
A
E
-----------
D
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---------------
I
Q
Q
G
QLH-
G
----
E
E
S
E
R
---
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
--
R
C
M
--------------
R
Q
T
----------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
43.94
21%
-81
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
-
D
L
---
C
G
M
S
Q
D
--
E
---
L
N
E
C
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P
A
V
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K-----------
E
---
N
----
P
---
T
------------------
S
-----
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-----------
S
---
Q
P
C
---
C
T
A
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-------------------
F
A
C
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C
G
Y
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P
-
W
L
-----------
G
S
---------------
F
-------
G
----
V
-------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
--------------------
P
T
C
------------------------------------------------------------------------------------------------------------------------------------------
20
SP3
43.37
8%
-116
- C2 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLG
D
A
A
L
I
K
---
D
N
H
V
A
A
A
G
S
---
V
V
D
A
L
R
A
V
R
---------------------
N
---
A
------------------
A
-----
P
-----------
D
---
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
-----------
T
V
M
L
E
S
S
----------
G
-------
G
----
L
-------
S
----------
L
Q
T
A
A
T
Y
--
A
E
-
T
G
V
D
---
Y
--------------
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M------------------------------------------------------------------------------------------------------------------------------
16
SP3
42.68
8%
-116
- C2 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLG
D
A
A
L
I
K
---
D
N
H
V
A
A
A
G
S
---
V
V
D
A
L
R
A
V
R
---------------------
N
---
A
------------------
A
-----
P
-----------
D
---
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
-----------
T
V
M
L
E
S
S
----------
G
-------
G
----
L
-------
S
----------
L
Q
T
A
A
T
Y
--
A
E
-
T
G
V
D
---
Y
--------------
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
42.57
14%
-114
- C2 -
1B1U
-
IAAT_ELECO
A:
[15-109]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
---
L
D
S
C
R
W
Y
V
S
------------
T
---
R
T
CGV
G
---
P
------------------
R
LA
T
Q
E
M
-----------
K
---
A
R
C
---
C
R
Q
L
E
A
I
-------------------
P
A
Y
C
R
C
E
A
V
R
I
L
-
M
D
-----------
G
V
V
T
PSG
Q
H
E
G
RLLQDL
P
-------
G
CP--
R
Q
V
Q
R
---
A
----------
F
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(5 SA)
.........10........20........30........40........50........60........70........80........90....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ESAISCGTVTSDLTQCVGYLTSGKGKPTPSCCGGVKKLADLASTTPARRAVCGCLKQAYSQFPNVNSAAVSGLPGACGVNLPFKISLQTNCNTIN
42
99.40
100%
-146
- C- -
M042
-
A:
[1-120]
E
S
A
I
S
C
G
T
V
T
S
D
L
T
Q
C
V
G
Y
L
T
S
G
K
G
K
P
T
P
S
C
C
G
G
V
K
K
L
A
D
L
A
S
T
T
P
A
R
R
A
V
C
G
C
L
K
Q
A
Y
S
Q
F
P
N
V
N
S
A
A
V
S
G
L
P
G
A
C
G
V
N
L
P
F
K
I
S
L
Q
T
N
C
N
T
I
N
48
97.58
100%
-146
- C- -
M048
-
A:
[1-116]
E
S
A
I
S
C
G
T
V
T
S
D
L
T
Q
C
V
G
Y
L
T
S
G
K
G
K
P
T
P
S
C
C
G
G
V
K
K
L
A
D
L
A
S
T
T
P
A
R
R
A
V
C
G
C
L
K
Q
A
Y
S
Q
F
P
N
V
N
S
A
A
V
S
G
L
P
G
A
C
G
V
N
L
P
F
K
I
S
L
Q
T
N
C
N
T
I
N
41
97.31
100%
-147
- C- -
M041
-
A:
[1-120]
E
S
A
I
S
C
G
T
V
T
S
D
L
T
Q
C
V
G
Y
L
T
S
G
K
G
K
P
T
P
S
C
C
G
G
V
K
K
L
A
D
L
A
S
T
T
P
A
R
R
A
V
C
G
C
L
K
Q
A
Y
S
Q
F
P
N
V
N
S
A
A
V
S
G
L
P
G
A
C
G
V
N
L
P
F
K
I
S
L
Q
T
N
C
N
T
I
N
46
37.68
100%
4
- C- -
M046
-
A:
[3-112]
E
S
A
I
S
C
G
T
V
T
S
D
L
T
Q
C
V
G
Y
L
T
S
G
K
G
K
P
T
P
S
C
C
G
G
V
K
K
L
A
D
L
A
S
T
T
P
A
R
R
A
V
C
G
C
L
K
Q
A
Y
S
Q
F
P
N
V
N
S
A
A
V
S
G
L
P
G
A
C
G
V
N
L
P
F
K
I
S
L
Q
T
N
C
N
T
I
N
45
35.39
100%
5
- C- -
M045
-
A:
[3-112]
E
S
A
I
S
C
G
T
V
T
S
D
L
T
Q
C
V
G
Y
L
T
S
G
K
G
K
P
T
P
S
C
C
G
G
V
K
K
L
A
D
L
A
S
T
T
P
A
R
R
A
V
C
G
C
L
K
Q
A
Y
S
Q
F
P
N
V
N
S
A
A
V
S
G
L
P
G
A
C
G
V
N
L
P
F
K
I
S
L
Q
T
N
C
N
T
I
N