@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-05 )
AISCSTVIADLVPCLSYVTGSAASPPAACCNGVKTLNAAAQTTPDRQAACKCIKSAAASYHYNSAKADKIPALCGVNIGIPISPSTSCDTIH
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........--.10--.........----20--.-----------------.---------------.-------------------.-----------.---------------------...---30........40-----------........50.....-...60-------.-.-------.----------.------------.....70-.........--80........90.---------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AISCSTVI--AD---LVPCLSYVT----GS--A-----------------A---------------S-------------------P-----------P---------------------AAC---CNGVKTLNAAAQ-----------TTPDRQAACKCIKSA-AASY--------H-Y-------N----------S------------AKADKI--PALCGVNIG--IPISPSTSCDTIH---------
22
HHSearch
96.56
49%
-127
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
C
G
Q
V
T
--
S
N
---
L
A
P
C
L
A
Y
L
R
----
N
T
--
G
-----------------------------------------------------
P
-----------
L
---------------------
G
R
C
---
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
L
K
S
A
-
A
G
A
I
S-------
G
-
I
-------
N
----------
L
------------
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
--
Y
K
I
S
P
S
T
D
C
S
K
V
Q
---------
11
SP3
93.69
48%
-120
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
--
S
A
---
I
A
P
C
I
S
Y
A
R
----
G
Q
--
G
-----------------
S
---------------
G
-------------------
P
-----------
S
---------------------
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
G
V
S-------
G
-
L
-------
N
----------
A
------------
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
--
Y
T
I
S
T
S
T
D
C
S
R
V
N
---------
21
HHSearch
89.66
49%
-112
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
--
S
A
---
I
A
P
C
I
S
Y
A
R
----
G
Q
--
G
-----------------
S
---------------
G
-------------------
P
-----------
S
---------------------
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
G
V
S-------
G
-
L
-------
N
----------
A
------------
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
--
Y
T
I
S
T
S
T
D
C
S
R
V
N
---------
23
HHSearch
88.36
47%
-123
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
Q
V
S
--
S
S
---
L
A
P
C
I
P
Y
V
R
----
G
G
--------------------
G
---------------
A
-------------------
V
-----------
P
---------------------
P
A
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
K
Q
L
-
S
A
S
V
P-------
G
-
V
-------
N
----------
P
------------
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
--
Y
K
I
S
A
S
T
N
C
A
T
V
K
---------
26
HHSearch
84.53
42%
-110
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
D
--
S
L
---
V
R
P
C
L
S
Y
V
Q
----
G
G
--------------------
P
---------------
G
-------------------
P
-----------
S
---------------------
G
Q
C
---
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
L
K
G
I
-
A
R
G
I
H-------
N
-
L
-------
N
----------
E
------------
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
--
Y
T
I
S
L
N
I
D
C
S
R
V
----------
25
HHSearch
82.87
38%
-124
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
Q
--
G
N
---
L
A
Q
C
I
G
F
L
Q
----
K
G
--------------------
G
---------------
V
-------------------
V
-----------
P
---------------------
P
S
C
---
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
L
K
A
A
-
A
G
A
V
R-------
G
-
I
-------
N
----------
P
------------
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
--
Y
K
I
S
T
S
T
N
C
N
S
I
N
---------
4
Fugue
69.79
20%
-130
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
--
E
E
A
EM
L
N
H
C
G
M
Y
L
M
----
K
N
--
L
-----------------
G
---------------
E
-------------------
R
-----------
S
QVSPR
M
R
E
E
D
H
K
---------
Q
L
C
---
C
M
Q
L
K
N
L
D
E
K
C
M
-------------------
C
P
A
I
M
M
M
-
L
N
E
P
--------
M
-
W
-------
I
----------
R
MR
D
Q
V
M
------
S
M
A
H
N
L
--
P
I
E
C
N
L
M
---------
S
Q
P
C
Q
M
-----------
8
Fugue
65.33
24%
-92
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
Q
E
V
--
Q
R
KD-
L
S
S
C
E
R
Y
L
R
----
Q
S
--
S
-----------------
S
---------------
R
-------------------
R
-----------
S
T
GEEVLRMPGDENQQQESQQL
Q
Q
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
D
Q
--------
I
-
Q
-------
Q
----------
G
QLHGEE
S
E
R
V
A
-
Q
R
A
G
E
I
--
V
S
S
C
G
--------
V
R
C
M
R
Q
T
R
T
N
----------
33
HHSearch
63.54
31%
-92
- C2 -
1PSY
-
2SS_RICCO
A:
[25-121]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
---
L
S
S
C
E
R
Y
L
R
----
Q
S
S
S
R
-----------------
R
---------------
S
T
GEEVLRMPGDENQQQESQ
Q
-----------
L
---------------------
Q
Q
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
D
Q
I
Q
Q
-----
G
Q
L
HGEE
S
E
R
V
----------
A
------------
Q
R
A
G
E
I
--
V
S
S
C
G
V
--
R
--
C
M
R
Q
------------------
19
SP3
61.62
16%
-141
- C2 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------MCYPGQ
A
F
Q
----
V
--
P
A
---
L
P
A
C
R
P
L
L
R
L
Q
C
-
N
G
--
S
-----------------
Q
---------------
V
-------------------
P
-----------
E
A
V
L
------------------
R
D
C
---
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
S
M
Y
K
E
HGAFP
R
-
C
-------
R
R
E
V
V
------
K
------------
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
----
V
D
A
S
G
D
G
A
Y
V
C
K
D
V
A
A
YPDA
34
HHSearch
61.16
25%
-117
- C2 -
1SM7
-
?
A:
[13-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
H
---
L
R
A
C
Q
Q
W
I
R
----
Q
Q
--
L
-----------------
A
G
S
P
F
S
E
NQWGPQQGP
S
-------------------
L
-----------
R
---------------------
E
Q
C
---
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
K
Q
A
-
A
K
S
V
RVQ-----
G
Q
H
-------
G
PFQST
R
I
---
Y
------------
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
------------------------
36
HHSearch
60.68
19%
-129
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-110]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
---
L
P
S
C
R
W
Y
V
T
S
R
TC
G
I
--
G
-----------------
P
---------------
R
-------------------
L
P
W
P
E
L
------
K
---------------------
R
R
C
---
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
S
I
L
-
M
D
G
A
I
P
P
G
----
P
-
D
AQL
E
G
R
L
E
D
LPGCP
R
E
V
Q
R
------------
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
--
S
---------------------
41
HHSearch
56.06
21%
-124
- C2 -
1HSS
-
IAA1_WHEAT
A:
[15-104]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
A
---
L
P
A
C
R
P
L
L
R
----
L
Q
--
C
N
G---------------
S
Q--------------
V
-------------------
P
E
A
V
--------
L
---------------------
R
D
C
---
C
Q
Q
L
A
H
I
S
-------------------
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
S
M
Y
K
E
H-------GAFPRC-
R
R
E
V
V
------
K
------------
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
------------------------
17
SP3
52.61
16%
-95
- C2 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
-
A
G
S
V
V
--
D
A
---
L
R
A
V
R
N
A
--------------------------------------------
A
-------------------
P
-----------
D
---------------------
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
T
V
M
L
E
S
S
G
--
G
-
L
-------
S
----------
L
------------
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
-----
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M-
7
Fugue
51.71
16%
-91
- C2 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GPMRRERGRQGD
S
S
S
C
E
R
Q
V
D
R
V
N
---
L
K
P
C
E
Q
H
I
M
----
Q
R
--
I
MGEQEQYDSYDIRSTR
S
S
---------------
D
-------------------
Q
-----------
Q
---------------------
Q
R
C
---
C
D
E
L
N
E
M
-------------------
E
N
T
Q
G
C
M
C
E
A
L
Q
-
Q
I
M
E
--------
N
-
Q
-------
C
----------
D
RLQDRQMV
Q
Q
F
K
R
E
L
M
S
L
--
P
Q
Q
C
N
--------
F
R
A
P
Q
R
C
D
L
D
V
SGGRCS---
12
SP3
51.03
20%
-90
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
--
N
A
--
G
Q
---
L
T
V
C
T
G
A
I
A
----
G
G
--
A
-----------------
R
-----------------------------------
P
-----------
T
---------------------
A
A
C
---
C
S
S
L
R
A
--------------------
Q
Q
G
C
F
C
Q
F
A
K
D
P
-
R
Y
G
R
--------
Y
-
V
-------
N
----------
S
------------
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
---------
T
C
H
------------
38
HHSearch
50.71
11%
-95
- C2 -
1W2Q
-
CONG_ARAHY
A:
[23-121]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
N
---
L
K
P
C
E
Q
H
I
M
----
Q
R
--
I
MGEQE------------
Q
Y--------------
D
-------------------
S
YDIRSTR
S
S
D
Q
Q
---------------------
Q
R
C
---
C
D
E
L
N
E
M
E
----------------
N
-
T
Q
G
C
M
C
E
A
L
Q
Q
I
-
M
E
N
Q
C-------
D
R
L
QDRQMV
Q
Q
F
---------
K
------------
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
QR
C
D
L
D
V
-----------------
27
HHSearch
49.75
23%
-95
- C2 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
Q
--
D
E
---
L
N
E
C
K
P
A
V
S
----
K
E
--
N
-----------------
P
T--------------
S
-------------------
P
-----------
S
---------------------
Q
P
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
S
P
W
L
G
S
F
--------
G
-
V
-------
D
----------
P
------------
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
--
P
---------------------
15
SP3
49.45
16%
-95
- C2 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
-
A
G
S
V
V
--
D
A
---
L
R
A
V
R
N
A
--------------------------------------------
A
-------------------
P
-----------
D
---------------------
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
T
V
M
L
E
S
S
G
--
G
-
L
-------
S
----------
L
------------
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
-----
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M-
2
Fugue
47.18
20%
-86
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
D
L
C
G
M
S
Q
--
D
E
---
L
N
E
C
K
P
A
V
S
----
K
E
--
N
-----------------
P
---------------
T
-------------------
S
-----------
P
S--------------------
Q
P
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
S
P
-
W
L
G
S
--------
F
G
V
-------
D
----------
P
------------
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
--------
N
A
P
T
C
-------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AISCSTVIADLVPCLSYVTGSAASPPAACCNGVKTLNAAAQTTPDRQAACKCIKSAAASYHYNSAKADKIPALCGVNIGIPISPSTSCDTIH
46
96.34
100%
-130
- C- -
M046
-
A:
[1-93]
A
I
S
C
S
T
V
I
A
D
L
V
P
C
L
S
Y
V
T
G
S
A
A
S
P
P
A
A
C
C
N
G
V
K
T
L
N
A
A
A
Q
T
T
P
D
R
Q
A
A
C
K
C
I
K
S
A
A
A
S
Y
H
Y
N
S
A
K
A
D
K
I
P
A
L
C
G
V
N
I
G
I
P
I
S
P
S
T
S
C
D
T
I
H
42
93.02
100%
-120
- C- -
M042
-
A:
[1-93]
A
I
S
C
S
T
V
I
A
D
L
V
P
C
L
S
Y
V
T
G
S
A
A
S
P
P
A
A
C
C
N
G
V
K
T
L
N
A
A
A
Q
T
T
P
D
R
Q
A
A
C
K
C
I
K
S
A
A
A
S
Y
H
Y
N
S
A
K
A
D
K
I
P
A
L
C
G
V
N
I
G
I
P
I
S
P
S
T
S
C
D
T
I
H
48
91.00
100%
-127
- C- -
M048
-
A:
[1-287]
A
I
S
C
S
T
V
I
A
D
L
V
P
C
L
S
Y
V
T
G
S
A
A
S
P
P
A
A
C
C
N
G
V
K
T
L
N
A
A
A
Q
T
T
P
D
R
Q
A
A
C
K
C
I
K
S
A
A
A
S
Y
H
Y
N
S
A
K
A
D
K
I
P
A
L
C
G
V
N
I
G
I
P
I
S
P
S
T
S
C
D
T
I
H
43
48.30
100%
-
- C- -
M043
-
A:
[1-93]
A
I
S
C
S
T
V
I
A
D
L
V
P
C
L
S
Y
V
T
G
S
A
A
S
P
P
A
A
C
C
N
G
V
K
T
L
N
A
A
A
Q
T
T
P
D
R
Q
A
A
C
K
C
I
K
S
A
A
A
S
Y
H
Y
N
S
A
K
A
D
K
I
P
A
L
C
G
V
N
I
G
I
P
I
S
P
S
T
S
C
D
T
I
H