@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-05 )
ESAISCGTVTSDMTPCVGYLTSGKGKPTPNCCGGVKKLAGLANTTPARRAVCGCLKQAYSQFPNANSAAVSGLPGACGVNLPFKISLQTNCNTIN
Atome Classification :
(20 SA)
--------------------------------------------------...-..---....10--........20----.---.----.----.------------.-----------.-----------.---.30---........40..-----------......50.......-.60----------..-------.---------------.----.-------.----------...70..--......80...--------------.....90....--------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------ESA-IS---CGTVTS--DMTPCVGYLT----S---G----K----G------------K-----------P-----------T---PNC---CGGVKKLAGLAN-----------TTPARRAVCGCLKQA-YS-----------QF-------P---------------N----A-------N----------SAAVSGL--PGACGVNLPFK--------------ISLQTNCNTIN--------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
93.77
47%
-136
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
------------------------------------------------------
M
T
---
C
G
Q
V
Q
G
--
N
L
A
Q
C
I
G
F
L
Q
----
K
---
G
---------
G
------------
V
-----------
V
-----------
P
---
P
S
C
---
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
L
K
A
A
-
A
G
-----------
A
V
-------
R
---------------
G
----
I
-------
N
----------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
--------------
I
S
T
S
T
N
C
N
S
I
N
--------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
93.06
46%
-138
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
----------------------------------------------------
A
-
I
T
---
C
G
Q
V
T
S
--
N
L
A
P
C
L
A
Y
L
R
----
N
---
T
----
G
-----------------------------
P
-----------
L
---
G
R
C
---
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
L
K
S
A
-
A
G
-----------
A
I
-------
S
---------------
G
----
I
-------
N
----------
L
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
Y
K
--------------
I
S
P
S
T
D
C
S
K
V
Q
--------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
88.72
46%
-131
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
----------------------------------------------------
M
-
I
T
---
C
G
Q
V
S
S
--
S
L
A
P
C
I
P
Y
V
R
----
G
---
G
---------
G
------------
A
-----------
V
-----------
P
---
P
A
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
K
Q
L
-
S
A
-----------
S
V
-------
P
---------------
G
----
V
-------
N
----------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
--------------
I
S
A
S
T
N
C
A
T
V
K
--------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
88.45
41%
-114
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
----------------------------------------------------
A
-
I
S
---
C
G
Q
V
A
S
--
A
I
A
P
C
I
S
Y
A
R
----
G
---
Q
----
G
----
S
------------
G
-----------
P
-----------
S
---
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
-----------
G
V
-------
S
---------------
G
----
L
-------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
--------------
I
S
T
S
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------------------------------
11
SP3
88.35
40%
-124
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
----------------------------------------------------
A
-
I
S
---
C
G
Q
V
A
S
--
A
I
A
P
C
I
S
Y
A
R
----
G
---
Q
----
G
----
S
------------
G
-----------
P
-----------
S
---
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
-----------
G
V
-------
S
---------------
G
----
L
-------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
--------------
I
S
T
S
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
84.67
39%
-123
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
------------------------------------------------------
I
D
---
C
G
H
V
D
S
--
L
V
R
P
C
L
S
Y
V
Q
----
G
---
G
---------
P
------------
G
-----------
P
-----------
S
---
G
Q
C
---
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
L
K
G
I
-
A
R
-----------
G
I
-------
H
---------------
N
----
L
-------
N
----------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
--------------
I
S
L
N
I
D
C
S
R
V
---------------------------------------------------------------------------------------------------------------------------------------
39
HHSearch
59.79
16%
-132
- C2 -
1W2Q
-
CONG_ARAHY
A:
[22-114]
---------------------------------------------------------------
R
V
--
N
L
K
P
C
E
Q
H
I
M
----
Q
---
R
I
MG-
E
QE--
Q
Y-----------
D
-----------
S
YDIRSTR
S
S
D
Q
Q
---
Q
R
C
---
C
D
E
L
N
E
M
E
----------------
N
-
T
Q
G
C
M
C
E
A
L
Q
Q
I
-
M
E
-----------
N
Q
-------
C
DRLQ-----------
D
----
R
-------
Q
MV
Q
Q
F
-----
K
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
52.60
23%
-127
- C2 -
3OB4
-
?
A:
[429-485]
----------------------------------------------------------------------------------------------------------------------------------------
E
R
C
---
C
N
E
L
N
E
F
E
N
-----------------
N
Q
R
C
M
C
E
A
L
Q
Q
I
-
M
E
-----------
N
Q
S
DRL---
Q
---------------
G
----
R
-------
Q
Q
E
Q
Q
F
-----
K
R
E
L
R
N
L
--
P
Q
Q
C
G
L
R
A
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
52.18
14%
-131
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
----------------------------------------------------------------
N
--
P
L
P
S
C
R
W
Y
V
T
S
R
TC
G
---
I
----
G
----
P
------------
R
-----------
L
P
W
P
E
L
------
K
---
R
R
C
---
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
S
I
L
-
M
D
-----------
G
A
-------
I
P
P
G
PDAQ--------
L
E
G
R
-
L
-------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
50.99
14%
-129
- C2 -
1HSS
-
IAA1_WHEAT
A:
[15-105]
----------------------------------------------------------------
P
--
A
L
P
A
C
R
P
L
L
R
----
L
---
Q
C
N
G-
S
----
Q
------------
V
-----------
P
E
A
V
--------
L
---
R
D
C
---
C
Q
Q
L
A
H
I
S
-------------------
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
-----------
S
M
-------
Y
K
E
HGAFP--------
R
CR
R
E
V
-------
V
----------
K
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
50.33
19%
-117
- C2 -
1SM7
-
?
A:
[13-101]
----------------------------------------------------------------
Q
--
H
L
R
A
C
Q
Q
W
I
R
----
Q
---
Q
----
L
AG
S
-
P
F
S
E
NQWGPQQGP
S
-----------
L
-----------
R
---
E
Q
C
---
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
K
Q
A
-
A
K
-----------
S
V
-------
R
VQ-------------
G
Q---
H
GPFQST
R
I
----------
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
14
SP3
48.95
12%
-71
- C2 -
1A0P
-
?
?:
[3-292]
-----------------------------------Q
D
L
A
R
I
E
Q
F
L
D
A
L
W
L
E
K
N
-
L
A
E
N
T
L
N
A
Y
R
R
--
D
L
S
M
M
V
E
W
L
H
----
H
---
R
----
G
----
L
------------
T
-----------
L
-----------
A
---
T
A
Q
---
S
D
D
L
Q
A
L
L
A
E
R
L
-----------
S
S
A
R
L
L
S
A
V
R
R
L
F
Q
Y
-
L
Y
R
E
KFREDDPSA
H
L
-------
K
---------------
D
----
L
-------
S
----------
E
A
Q
V
E
R
L
--
L
Q
A
P
L
I
D
Q
P
L
E
L
R
D
K
A
M
L
E
V
L
Y
A
TG
L
R
V
S
-
E
L
V
G
L
T
MSDISLRQG
V
V
R
V
I
G
KGNK
E
R
L
V
P
LG
E
E
A
V
Y
W
L
E
T
Y
L
E
HG
R
P
W
L
L
N
GVSIDVLFPSQRAQQMT
R
Q
T
F
W
H
R
I
K
H
Y
A
V
L
A
GIDSEKLS
P
H
V
L
R
H
A
F
A
T
H
L
L
N
HGADLRVVQMLLSDLS
T
T
Q
I
Y
T
H
V
A
T
E
R
L
R
Q
L
H
Q
31
HHSearch
48.63
20%
-83
- C2 -
1PSY
-
2SS_RICCO
A:
[25-121]
----------------------------------------------------------------
K
--
D
L
S
S
C
E
R
Y
L
R
----
Q
---
S
S
S
R
-
R
----
S
T
GEEVLR-----
M
PGDENQQQESQ
Q
-----------
L
---
Q
Q
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
-----------
D
Q
-------
I
Q
Q
G
QLH---------
G
----
E
E
S
E
R
---
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
--
R
C
M
--------------
R
Q
-----------------------------------------------------------------------------------------------------------------------------------------------
15
SP3
48.21
12%
-118
- C2 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
----------------------------------------------MCYP
G
Q
A
-
F
Q
-------
V
P
--
A
L
P
A
C
R
P
L
L
R
----
L
Q
C
N
G
----
S
----
Q
------------
V
-----------
P
-----------
E
A
V
L
R
D
C
---
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
-----------
S
M
Y
K
E
HGAF
P
---------------
R
----
C
-------
R
R
E
V
V
------
K
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
V
----------------
D
A
S
G
D
G
A
Y
V
C
K
D
V
A
A
YPDA-----------------------------------------------------------------------------------------------------------------------------
41
HHSearch
47.64
18%
-95
- C2 -
1S6D
-
2SS8_HELAN
A:
[19-97]
----------------------------------------------------------------
E
--
M
L
N
H
C
G
M
Y
L
M
----
K
---
N
----
L
GERS
Q
VSPR
M
R
E
E
----
D
-----------
H
-----------
K
---
Q
L
C
---
C
M
Q
L
K
N
L
D
-------------------
E
K
C
M
C
P
A
I
M
M
M
-
L
N
-----------
E
P
-------
M
W--------------
I
----
R
MR
D
Q
---
V
----------
M
S
M
A
H
N
L
--
P
I
E
C
N
L
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
44.94
19%
-99
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-75]
---------------------------------------------------
A
I
-
D
L
---
C
G
M
S
Q
D
--
E
L
N
E
C
K
P
A
V
S
----
K
---
E
----
N
----
P
T-----------
S
-----------
P
-----------
S
---
Q
P
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
S
P
W
L
G
-----------
S
F
-----------------------
G
----
V
-------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
44.10
18%
-77
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
---------------------------------------------------
A
I
-
D
L
---
C
G
M
S
Q
D
--
E
L
N
E
C
K
P
A
V
S
K---
E
---
N
----
P
----
T
------------
S
-----------
P
-----------
S
---
Q
P
C
---
C
T
A
L
Q
H
A
D
-------------------
F
A
C
L
C
G
Y
K
N
S
P
-
W
L
-----------
G
S
-------
F
---------------
G
----
V
-------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
--------------------
P
T
C
------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
43.57
11%
-103
- C2 -
1B1U
-
IAAT_ELECO
A:
[15-109]
----------------------------------------------------------------
N
--
P
L
D
S
C
R
W
Y
V
S
----
T
---
R
T
CGV
G
----
P
------------
R
LA
T
Q
E
------
M
-----------
K
---
A
R
C
---
C
R
Q
L
E
A
I
-------------------
P
A
Y
C
R
C
E
A
V
R
I
L
-
M
D
-----------
G
V
-------
V
T
PSG
Q
H
E
G
RLLQDLP
G
CP--
R
Q
V
Q
R
---
A
----------
F
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------
12
SP3
42.41
18%
-74
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
------------------------------------------------------
A
G
---
C
--
N
A
G
--
Q
L
T
V
C
T
G
A
I
A
----
G
---
G
----
A
----
R
------------------------
P
-----------
T
---
A
A
C
---
C
S
S
L
R
A
--------------------
Q
Q
G
C
F
C
Q
F
A
K
D
P
-
R
Y
-----------
G
--------
R
---------------
Y
----
V
-------
N
----------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
---------------------
T
C
H
-----------------------------------------------------------------------------------------------------------------------------------------
16
SP3
40.91
8%
-106
- C2 -
1QPO
-
NADC_MYCTU
A:
[116-284]
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLG
D
A
A
L
I
K
---
D
N
H
V
A
A
A
G
S
V
V
D
A
L
R
A
V
R
-------------
N
----
A
------------
A
-----------
P
-----------
D
---
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
-----------
T
V
M
L
E
S
S
--
G
---------------
G
----
L
-------
S
----------
L
Q
T
A
A
T
Y
--
A
E
-
T
G
V
D
---
Y
--------------
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ESAISCGTVTSDMTPCVGYLTSGKGKPTPNCCGGVKKLAGLANTTPARRAVCGCLKQAYSQFPNANSAAVSGLPGACGVNLPFKISLQTNCNTIN
46
37.69
100%
3
- C- -
M046
-
A:
[3-95]
E
S
A
I
S
C
G
T
V
T
S
D
M
T
P
C
V
G
Y
L
T
S
G
K
G
K
P
T
P
N
C
C
G
G
V
K
K
L
A
G
L
A
N
T
T
P
A
R
R
A
V
C
G
C
L
K
Q
A
Y
S
Q
F
P
N
A
N
S
A
A
V
S
G
L
P
G
A
C
G
V
N
L
P
F
K
I
S
L
Q
T
N
C
N
T
I
N
42
37.02
100%
0
- C- -
M042
-
A:
[3-126]
E
S
A
I
S
C
G
T
V
T
S
D
M
T
P
C
V
G
Y
L
T
S
G
K
G
K
P
T
P
N
C
C
G
G
V
K
K
L
A
G
L
A
N
T
T
P
A
R
R
A
V
C
G
C
L
K
Q
A
Y
S
Q
F
P
N
A
N
S
A
A
V
S
G
L
P
G
A
C
G
V
N
L
P
F
K
I
S
L
Q
T
N
C
N
T
I
N
43
35.83
100%
4
- C- -
M043
-
A:
[3-126]
E
S
A
I
S
C
G
T
V
T
S
D
M
T
P
C
V
G
Y
L
T
S
G
K
G
K
P
T
P
N
C
C
G
G
V
K
K
L
A
G
L
A
N
T
T
P
A
R
R
A
V
C
G
C
L
K
Q
A
Y
S
Q
F
P
N
A
N
S
A
A
V
S
G
L
P
G
A
C
G
V
N
L
P
F
K
I
S
L
Q
T
N
C
N
T
I
N
48
35.65
100%
7
- C- -
M048
-
A:
[3-95]
E
S
A
I
S
C
G
T
V
T
S
D
M
T
P
C
V
G
Y
L
T
S
G
K
G
K
P
T
P
N
C
C
G
G
V
K
K
L
A
G
L
A
N
T
T
P
A
R
R
A
V
C
G
C
L
K
Q
A
Y
S
Q
F
P
N
A
N
S
A
A
V
S
G
L
P
G
A
C
G
V
N
L
P
F
K
I
S
L
Q
T
N
C
N
T
I
N