@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 325_tI_POPCN: (2014-05-06 )
LTCGVVASNLAPCIGYLRNGGKVPDPCCKGVGALNNAAKTTKDRRDACNCIKTTATQIGGVNAANAAALPGFCRVNIPYKISTSTNCASIK
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------...--...--..--.--10........----20--.----------------------.-------------------.------------.--.----..---..30........-----------40........50...-...-.-------.-------60--------.---------.----------.......--70........80........90----------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------LT
C
--
G
V
V
--
A
S
--
N
--
L
A
P
C
I
G
Y
L
RN----G---G----------------------K-------------------V------------P--
D
----
P
C
---
C
K
G
V
G
ALN
N
A
A
K-----------T
T
K
D
R
R
D
A
C
N
C
I
K
T
T
-
A
T
Q-I-------G-------G---------V---------N----------AANAAAL--P
G
F
C
R
VN
I
P
Y
K
ISTSTNCASIK----------
3
HHSearch
95.98
57%
-117
- C1 -
1T12
-
NLTP1_TOBAC
A:
[2-91]
---------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
--
G
Q
V
--
T
S
--
N
--
L
A
P
C
L
A
Y
L
R
N
----
T
---
G
------------------------------------------
P
------------
L
--
G
----
R
C
---
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
L
K
S
A
-
A
G
A
-
I
-------
S
-------
G
---------
I
---------
N
----------
L
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
Y
K
I
S
P
S
T
D
C
S
K
V
Q
----------
1
HHSearch
95.94
60%
-120
- C1 -
2ALG
2
NLTP1_PRUPE
A:
[2-92]
---------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
--
G
Q
V
--
S
S
--
S
--
L
A
P
C
I
P
Y
V
R
G
----
G
---
G
----------------------
A
-------------------
V
------------
P
--
P
----
A
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
K
Q
L
-
S
A
S
-
V
-------
P
-------
G
---------
V
---------
N
----------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
I
S
A
S
T
N
C
A
T
V
K
----------
4
HHSearch
95.88
58%
-121
- C1 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
---------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
--
G
Q
V
--
Q
G
--
N
--
L
A
Q
C
I
G
F
L
Q
K
----
G
---
G
----------------------
V
-------------------
V
------------
P
--
P
----
S
C
---
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
L
K
A
A
-
A
G
A
-
V
-------
R
-------
G
---------
I
---------
N
----------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
I
S
T
S
T
N
C
N
S
I
N
----------
32
SP3
91.24
54%
-122
- C1 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
--------------------------------------------------------------------------------------------------------------------------------------------------A
I
S
C
--
G
Q
V
--
A
S
--
A
--
I
A
P
C
I
S
Y
A
R
G
----
Q
---
G
----------------------
S
G------------------
P
------------
S
--
A
----
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
G
-
V
-------
S
-------
G
---------
L
---------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
----------
2
HHSearch
87.52
55%
-110
- C1 -
1AFH
-
NLTP_MAIZE
A:
[2-93]
---------------------------------------------------------------------------------------------------------------------------------------------------
I
S
C
--
G
Q
V
--
A
S
--
A
--
I
A
P
C
I
S
Y
A
R
G
----
Q
---
G
----------------------
S
G------------------
P
------------
S
--
A
----
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
G
-
V
-------
S
-------
G
---------
L
---------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
----------
6
HHSearch
85.74
40%
-111
- C1 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
---------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
--
G
H
V
--
D
S
--
L
--
V
R
P
C
L
S
Y
V
Q
G
----
G
---
P
----------------------
G
-------------------
P
------------
S
--
G
----
Q
C
---
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
L
K
G
I
-
A
R
G
-
I
-------
H
-------
N
---------
L
---------
N
----------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
I
S
L
N
I
D
C
S
R
V
-----------
16
HHSearch
64.40
24%
-128
- C1 -
1SM7
-
?
A:
[13-101]
--------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
H
--
L
R
A
C
Q
Q
W
I
R
Q
QLA-
G
---
S
----------------------
P
F
S
E
NQWGPQQGPS------
L
------------
R
--
E
----
Q
C
---
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
K
Q
A
-
A
K
S
-
V
-------
R
VQ-----
G
Q--------
H
---------
G
PFQST
R
I
---
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
-----------------------
18
HHSearch
62.62
23%
-132
- C1 -
1HSS
-
IAA1_WHEAT
A:
[15-106]
--------------------------------------------------------------------------------------------------------------------------------------------------------------
P
--
A
--
L
P
A
C
R
P
L
L
R
L
Q
C
N
-
G
---
S
----------------------
Q
VP
E
A
---------------
V
------------
L
--
R
----
D
C
---
C
Q
Q
L
A
H
I
S
-------------------
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
S
-
M
-------
Y
K
E
HGAFP
R
CR
R
E
-----
V
---------
V
----------
K
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
V
D
---------------------
28
Fugue
56.81
25%
-69
- C1 -
1PSY
-
2SS_RICCO
A:
[1-125]
------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
--
R
Q
E
--
V
Q
--
R
KD
L
S
S
C
E
R
Y
L
R
Q
----
S
---
S
S
R
R
S
T
GEEVLRMPGDENQQQES
Q
-------------------
Q
------------
L
--
Q
----
Q
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
D
-
Q
-------
I
-------
Q
---------
Q
---------
G
QLHGEE
S
E
R
V
A
Q
R
A
G
E
I
--
V
S
S
C
--
G
V
R
C
M
R
Q
T
R
T
N
---------------
11
HHSearch
56.77
27%
-66
- C1 -
1PSY
-
2SS_RICCO
A:
[25-122]
--------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
D
--
L
S
S
C
E
R
Y
L
R
Q
----
S
S
S
R
R
----------------------
S
T
GEEVLRMPGDENQQQESQ
Q
------------
L
--
Q
----
Q
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
D
-
Q
-------
I
Q
Q
G
QLH-
G
EE
S
E
-----
R
---------
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
--
R
C
M
R
Q
T
------------------
40
SP3
56.10
20%
-128
- C1 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
----------------------------------------------------------------------------------------------------------------------------------------------------
M
C
YP
G
Q
A
FQ
V
P
--
A
--
L
P
A
C
R
P
L
L
R
L
Q
C
N
-
G
---
S
----------------------
Q
-------------------
V
------------
P
--
E
A
V
L
R
D
C
---
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
S
-
M
Y
K
E
HGAF
P
-------
R
---------
C
---------
R
R
E
V
V
------
K
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
--
V
D
A
S
G
D
G
A
Y
V
C
K
D
V
A
A
YPDA-
15
HHSearch
55.68
17%
-127
- C1 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
--
L
P
S
C
R
W
Y
V
T
S
R
TCG
I
---
G
----------------------
P
R------------------
L
P
W
P
E
L
-------
K
--
R
----
R
C
---
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
S
I
L
-
M
D
G
-
A
-------
I
P
P
G
PDAQ
L
E
G
R
------
L
---------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
-----------------------
7
HHSearch
53.57
23%
-121
- C1 -
2RKN
2
DIRL1_ARATH
A:
[4-75]
----------------------------------------------------------------------------------------------------------------------------------------------------
L
C
--
G
M
S
--
Q
D
--
E
--
L
N
E
C
K
P
A
V
S
K
----
E
---
N
PT--------------------
S
-------------------
P
------------
S
--
Q
----
P
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
S
P
W
L
G
S
-
F
---------------
G
---------
V
---------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
----------------------
12
HHSearch
53.39
17%
-130
- C1 -
1B1U
-
IAAT_ELECO
A:
[15-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
--
L
D
S
C
R
W
Y
V
S
T
R
T
CG
V
---
G
----------------------
P
RLA
T
Q
E
-------------
M
------------
K
--
A
----
R
C
---
C
R
Q
L
E
A
I
-------------------
P
A
Y
C
R
C
E
A
V
R
I
L
-
M
D
G
-
V
-------
V
T
PS----
G
Q
H
E
G
RLLQD
L
PGCP
R
Q
V
Q
R
A
----------
F
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
H
----------------------
35
SP3
53.13
14%
-87
- C1 -
1O4U
-
?
A:
[1-273]
M
E
K
I
L
D
L
L
M
S
F
V
K
E
D
E
GKLDLASFPLRN
T
T
A
G
A
H
L
L
L
KT
E
N
V
V
A
S
G
I
E
V
S
R
M
F
L
E
K
M
G
L
L
S
K
F
NVEDG
E
Y
L
E
G
TGVI
G
E
I
E
G
N
T
Y
K
L
L
V
A
E
R
T
L
L
N
V
L
S
V
M
F
S
V
A
T
T
T
R
R
F
A
E
K
L
KH
A
K
I
A
A
T
RKILPGL
G
V
L
Q
K
I
A
V
V
H
G
GGDC
V
M
I
K
D
--
N
H
L
--
K
M
Y
G
S
--
A
E
R
A
V
Q
E
V
R
K
----
I
---
I
----------------------
P
-------------------
F
------------
T
--
T
----
K
I
E
V
E
V
E
N
L
E
D
A
L
R
A
V
E
A
GAD
I
V
M
L
D
NL
S
P
E
E
V
K
D
I
S
R
R
I
K
D
I
-
N
P
N
-
V
I
V
E
V
S
--
G
-------
G
---------
I
---------
T
----------
E
E
N
V
S
L
Y
---
D
F
E
T
V
D
V
---
I
S
S
S
R
L
T
L
Q
E
V
F
V
D
L
S
L
E
I
Q
R
23
Fugue
52.82
23%
-87
- C1 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-------------------------------------------------------------------------------------------------------------------------------------------------AI
D
L
C
--
G
M
S
--
Q
D
--
E
--
L
N
E
C
K
P
A
V
S
K
----
E
---
N
----------------------
P
-------------------
T
------------
S
PS
Q
----
P
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
S
P
-
W
L
G
-
S
-------
F
-------
G
---------
V
---------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
------
P
T
C
--------------
20
HHSearch
51.73
18%
-81
- C1 -
1W2Q
-
CONG_ARAHY
A:
[22-114]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
--
N
--
L
K
P
C
E
Q
H
I
M
Q
R
I
M-
G
---
E
QEQ-------------------
Y
-------------------
D
SYDIRSTR
S
S
D
Q
Q
--
Q
----
R
C
---
C
D
E
L
N
E
M
E
----------------
N
-
T
Q
G
C
M
C
E
A
L
Q
Q
I
-
M
E
N
-
Q
-------
C
DRLQ---
D
---------
R
---------
Q
MV
Q
Q
F
-----
K
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
-----------------------
34
SP3
48.12
20%
-66
- C1 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
----
N
--
A
G
--
Q
--
L
T
V
C
T
G
A
I
A
G
----
G
---
A
----------------------
R
-------------------
P
------------
T
--
A
----
A
C
---
C
S
S
L
R
A
----------------------
Q
Q
G
C
F
C
Q
F
A
K
-
D
P
R
-
Y
-------
G
-------
R
Y--------
V
---------
N
----------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
-------
T
C
H
-------------
37
SP3
47.56
14%
-94
- C1 -
1QPO
-
NADC_MYCTU
A:
[116-284]
---------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
--
N
H
V
--
A
A
A
G
S
--
V
V
D
A
L
R
A
V
R
N
----
A
---
A
----------------------
P
-------------------
D
------------
L
--
P
C
E
V
-
E
V
---
D
S
-
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
T
-
V
M
L
E
S
S
--
G
-------
G
---------
L
---------
S
----------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
---
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M--
19
HHSearch
47.37
20%
-63
- C1 -
2LVF
-
?
A:
[16-101]
--------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
M
--
L
S
H
C
R
M
Y
M
R
Q
Q
M
E
-
E
---
S
----------------------
T
-------------------
Y
QTMPRRGMEP
H
-
M
--
S
----
E
C
---
C
E
Q
L
E
G
M
-------------------
D
E
S
C
R
C
E
G
L
R
M
M
-
M
R
M
M
Q
Q
K
EM
Q
P
-
R
-------
G
E
Q
M
R
-----
R
---------
M
----------
M
R
L
A
E
N
I
--
P
S
R
C
N
L
S
-------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
LT
C
G
V
V
A
S
N
L
A
P
C
I
G
Y
L
RNGGKVP
D
P
C
C
K
G
V
G
ALN
N
A
A
KT
T
K
D
R
R
D
A
C
N
C
I
K
T
T
A
T
QIGGVNAANAAALP
G
F
C
R
VN
I
P
Y
K
ISTSTNCASIK
49
97.89
100%
-133
- C- -
M049
-
A:
[1-123]
L
T
C
G
V
V
A
S
N
L
A
P
C
I
G
Y
L
R
N
G
G
K
V
P
D
P
C
C
K
G
V
G
A
L
N
N
A
A
K
T
T
K
D
R
R
D
A
C
N
C
I
K
T
T
A
T
Q
I
G
G
V
N
A
A
N
A
A
A
L
P
G
F
C
R
V
N
I
P
Y
K
I
S
T
S
T
N
C
A
S
I
K
43
97.79
100%
-128
- C- -
M043
-
A:
[1-93]
L
T
C
G
V
V
A
S
N
L
A
P
C
I
G
Y
L
R
N
G
G
K
V
P
D
P
C
C
K
G
V
G
A
L
N
N
A
A
K
T
T
K
D
R
R
D
A
C
N
C
I
K
T
T
A
T
Q
I
G
G
V
N
A
A
N
A
A
A
L
P
G
F
C
R
V
N
I
P
Y
K
I
S
T
S
T
N
C
A
S
I
K
46
97.53
100%
-123
- C- -
M046
-
A:
[1-93]
L
T
C
G
V
V
A
S
N
L
A
P
C
I
G
Y
L
R
N
G
G
K
V
P
D
P
C
C
K
G
V
G
A
L
N
N
A
A
K
T
T
K
D
R
R
D
A
C
N
C
I
K
T
T
A
T
Q
I
G
G
V
N
A
A
N
A
A
A
L
P
G
F
C
R
V
N
I
P
Y
K
I
S
T
S
T
N
C
A
S
I
K
48
96.20
100%
-139
- C- -
M048
-
A:
[1-123]
L
T
C
G
V
V
A
S
N
L
A
P
C
I
G
Y
L
R
N
G
G
K
V
P
D
P
C
C
K
G
V
G
A
L
N
N
A
A
K
T
T
K
D
R
R
D
A
C
N
C
I
K
T
T
A
T
Q
I
G
G
V
N
A
A
N
A
A
A
L
P
G
F
C
R
V
N
I
P
Y
K
I
S
T
S
T
N
C
A
S
I
K