@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-06 )
ITCGQVVSNLTPCITYLQRGGAVPGQCCNGVKTLVSSAQTTADKQTACNCLKSTAATIPNINFGNAGSLPGKCGVNLPYKISPSTNCASIKF
Atome Classification :
(20 SA)
------------------------------------------------------........--.---10.......----.-------------20----------------------.-------------------.-----------..---....30........-----------40........50--...-...-.------.-------60--------.---------.----------.......--70........80........90.------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------ITCGQVVS--N---LTPCITYLQ----R-------------GG----------------------A-------------------V-----------PG---QCCNGVKTLVSSAQ-----------TTADKQTACNCL--KST-AAT-I------P-------N---------I---------N----------FGNAGSL--PGKCGVNLPYKISPSTNCASIKF------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
97.37
61%
-117
- C4 -
1T12
-
NLTP1_TOBAC
A:
[2-91]
------------------------------------------------------
I
T
C
G
Q
V
T
S
--
N
---
L
A
P
C
L
A
Y
L
R
----
N
-------------
T
G
------------------------------------------
P
-----------
L
G
---
R
C
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
L
--
K
S
A
-
A
G
A
-
I
------
S
-------
G
---------
I
---------
N
----------
L
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
Y
K
I
S
P
S
T
D
C
S
K
V
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
95.74
60%
-117
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[2-92]
------------------------------------------------------
I
T
C
G
Q
V
S
S
--
S
---
L
A
P
C
I
P
Y
V
R
----
G
-------------
G
G
----------------------
A
-------------------
V
-----------
P
P
---
A
C
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
--
K
Q
L
-
S
A
S
-
V
------
P
-------
G
---------
V
---------
N
----------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
I
S
A
S
T
N
C
A
T
V
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
95.66
58%
-116
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
------------------------------------------------------
M
T
C
G
Q
V
Q
G
--
N
---
L
A
Q
C
I
G
F
L
Q
----
K
-------------
G
G
----------------------
V
-------------------
V
-----------
P
P
---
S
C
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
L
--
K
A
A
-
A
G
A
-
V
------
R
-------
G
---------
I
---------
N
----------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
I
S
T
S
T
N
C
N
S
I
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
92.37
50%
-116
- C4 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-----------------------------------------------------A
I
S
C
G
Q
V
A
S
--
A
---
I
A
P
C
I
S
Y
A
R
----
G
-------------
Q
G
----------------------
S
G------------------
P
-----------
S
A
---
G
C
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
--
K
N
A
-
A
A
G
-
V
------
S
-------
G
---------
L
---------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
92.36
51%
-126
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
------------------------------------------------------
I
D
C
G
H
V
D
S
--
L
---
V
R
P
C
L
S
Y
V
Q
----
G
-------------
G
P
----------------------
G
-------------------
P
-----------
S
G
---
Q
C
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
L
--
K
G
I
-
A
R
G
-
I
------
H
-------
N
---------
L
---------
N
----------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
I
S
L
N
I
D
C
S
R
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
83.35
51%
-104
- C4 -
1AFH
-
NLTP_MAIZE
A:
[2-93]
------------------------------------------------------
I
S
C
G
Q
V
A
S
--
A
---
I
A
P
C
I
S
Y
A
R
----
G
-------------
Q
G
----------------------
S
G------------------
P
-----------
S
A
---
G
C
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
--
K
N
A
-
A
A
G
-
V
------
S
-------
G
---------
L
---------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
64.73
25%
-119
- C4 -
1SM7
-
?
A:
[13-101]
-------------------------------------------------------------
Q
--
H
---
L
R
A
C
Q
Q
W
I
R
----
Q
QLA----------
G
S
----------------------
P
F
S
E
NQWGPQQGPS------
L
-----------
R
E
---
Q
C
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
--
K
Q
A
-
A
K
S
-
V
------
R
VQ-----
G
Q--------
H
---------
G
PFQST
R
I
---
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
57.85
20%
-117
* C4 *
1HSS
-
IAA1_WHEAT
A:
[15-105]
-------------------------------------------------------------
P
--
A
---
L
P
A
C
R
P
L
L
R
----
L
Q
C
N
----------
G
S
----------------------
Q
VP
E
A
---------------
V
-----------
L
R
---
D
C
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
--
Y
S
M
-
L
D
S
-
M
------
Y
K
E
H-----GAFPRCR
R
E
V
---------
V
----------
K
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
57.14
19%
-110
- C4 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
-------------------------------------------------------------
N
--
P
---
L
P
S
C
R
W
Y
V
T
S
R
TC
G
-------------
I
G
----------------------
P
R------------------
L
P
W
P
E
L
------
K
R
---
R
C
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
--
S
I
L
-
M
D
G
-
A
------
I
P
P
G
PDAQ
L
E
G
R
------
L
---------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
53.53
27%
-56
- C4 -
1PSY
-
2SS_RICCO
A:
[1-125]
---------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
Q
E
V
Q
--
R
KD-
L
S
S
C
E
R
Y
L
R
----
Q
-------------
S
S
S
R
R
S
T
GEEVLRMPGDENQQQES
Q
-------------------
Q
-----------
L
Q
---
Q
C
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
--
K
Y
I
-
A
E
D
-
Q
------
I
-------
Q
---------
Q
---------
G
QLHGEE
S
E
R
V
A
Q
R
A
G
E
I
--
V
S
S
C
--
G
V
R
C
M
R
Q
T
R
T
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
53.46
22%
-82
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
----------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
--
E
A
EM
L
N
H
C
G
M
Y
L
M
----
K
NLGERSQVSPR
M
R
E
E
----------------------
D
-------------------
H
-----------
K
Q
---
L
C
C
M
Q
L
K
N
L
D
E
K
C
M
-------------------
C
P
A
I
--
M
M
M
-
L
N
E
-
P
------
M
WIRMR--
D
---------
Q
---------
V
----------
M
S
M
A
H
N
L
--
P
I
E
C
N
L
M
-------
S
Q
P
C
Q
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
50.60
14%
-95
- C4 -
1B1U
-
IAAT_ELECO
A:
[15-109]
-------------------------------------------------------------
N
--
P
---
L
D
S
C
R
W
Y
V
S
----
T
R
T
CG---------
V
G
----------------------
P
RLA
T
Q
E
-------------
M
-----------
K
A
---
R
C
C
R
Q
L
E
A
I
-------------------
P
A
Y
C
R
C
E
A
V
--
R
I
L
-
M
D
G
-
V
------
V
T
PS----
G
Q
H
E
G
RLLQD
L
PGCP
R
Q
V
Q
R
A
----------
F
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
50.33
21%
-77
- C4 -
1S6D
-
2SS8_HELAN
A:
[19-97]
-------------------------------------------------------------
E
--
M
---
L
N
H
C
G
M
Y
L
M
----
K
NLGE---------
R
S
----------------------
Q
VSPR
M
R
E
E
D
----------
H
-----------
K
Q
---
L
C
C
M
Q
L
K
N
L
D
-------------------
E
K
C
M
C
P
A
I
--
M
M
M
-
L
N
E
-
P
------
M
W------
I
RMR
D
-----
Q
---------
V
----------
M
S
M
A
H
N
L
--
P
I
E
C
N
L
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
49.64
21%
-87
- C4 -
1W2Q
-
CONG_ARAHY
A:
[22-114]
------------------------------------------------------------
R
V
--
N
---
L
K
P
C
E
Q
H
I
M
----
Q
R
I
M----------
G
E
QEQ-------------------
Y
DSYDIRSTR
S
S
D
-------
Q
-----------
Q
Q
---
R
C
C
D
E
L
N
E
M
E
----------------
N
-
T
Q
G
C
M
C
E
A
L
--
Q
Q
I
-
M
E
N
-
Q
------
C
DRLQ---
D
---------
R
---------
Q
MV
Q
Q
F
-----
K
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
49.29
23%
-26
- C1 -
4D8O
-
ANK2_HUMAN
A:
[964-1529]
------------------------------------------------------
E
F
S
G
F
L
V
S
--
F
---
M
V
D
-----
A
----
R
-------------
G
G
----------------------
A
-------------------
M
-----------
R
G
---
C
R
H
N
G
L
R
I
I
I
P
P
R
K
-----------
C
T
A
P
T
R
V
T
C
R
L
V
--
K
R
H
-
R
L
A
-
T
------
M
-----------------------------------------
P
P
M
V
--
E
G
E
G
L
A
S
R
L
I
E
V
G
P
S
G
A
----
Q
F
L
G
P
V
I
V
E
I
P
H
FAALRGKE
R
E
L
V
V
L
R
S
ENGD
S
W
K
E
H
F
C
D
YGMD
E
V
L
D
S
P
E
D
L
E
K
K
R
I
C
R
I
I
T
RDFPQ
Y
F
A
V
V
S
R
I
K
Q
D
S
N
L
I
G
PE
G
G
V
L
S
S
TVVPQ
V
Q
A
V
F
P
EGALTKR
I
R
V
G
L
Q
A
Q
P
M
H
S
E
L
V
K
K
I
LGNK
A
T
F
S
P
I
V
T
L
E
PRRRKFH
K
P
I
T
M
T
I
P
V
P
KASGDAPT
L
R
L
L
C
S
ITGGTT
P
A
Q
W
E
D
ITGT
T
P
L
T
F
V
NE
C
V
S
F
T
T
N
V
S
A
R
F
W
L
I
D
C
RQIQE
S
V
T
F
A
S
Q
V
Y
R
E
I
I
C
V
P
Y
M
A
K
F
V
V
F
A
K
SHDPI
E
A
R
L
R
C
F
C
M
TDDKVDKTLEQQENFAEV
A
R
S
R
D
V
E
V
L
E
G
K
P
I
Y
V
D
C
F
G
NLVPLTQ
H
H
I
F
S
F
F
A
FKE
N
R
L
P
L
F
V
K
V
RDTTQEP
C
G
R
L
S
F
M
KEPHQAI
C
N
L
N
I
T
L
P
I
Y
TE
E
R
L
A
Y
I
A
D
H
LGFS
W
T
E
L
A
R
E
L
DFT
E
E
Q
I
H
Q
I
R
I
E
N
PNS
L
Q
D
Q
S
H
A
L
L
K
Y
W
L
E
R
D
GKHAT
D
T
N
L
V
E
C
L
T
K
I
NRMDIVH
29
HHSearch
49.22
18%
-53
- C4 -
2LVF
-
?
A:
[16-101]
-------------------------------------------------------------
Q
--
M
---
L
S
H
C
R
M
Y
M
R
----
Q
Q
M
E
----------
E
S
----------------------
T
-------------------
Y
QTMPRRGMEP
H
M
S
---
E
C
C
E
Q
L
E
G
M
-------------------
D
E
S
C
R
C
E
G
L
--
R
M
M
-
M
R
M
M
Q
Q
K
EM
Q
P
R
-------
G
E
Q
M
R
-----
R
---------
M
----------
M
R
L
A
E
N
I
--
P
S
R
C
N
L
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
48.82
28%
-57
- C4 -
1PSY
-
2SS_RICCO
A:
[25-121]
-------------------------------------------------------------
K
--
D
---
L
S
S
C
E
R
Y
L
R
----
Q
S
S
S
----------
R
R
----------------------
S
T
GEEVLRMPGDENQQQESQ
Q
-----------
L
Q
---
Q
C
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
--
K
Y
I
-
A
E
D
-
Q
------
I
Q
Q
-----
G
Q--------
L
HGEE
S
E
R
--
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
--
R
C
M
R
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
SP3
47.21
14%
-89
* C5 *
1QPO
-
NADC_MYCTU
A:
[116-284]
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
A
G
S
---
V
V
D
A
L
R
A
V
R
----
N
-------------
A
A
----------------------
P
-------------------
D
-----------
L
P
C
E
V
E
V
D
S
-
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
--
D
S
R
-
A
P
T
-
V
------
M
L
E
S
S
G
--
G
---------
L
---------
S
----------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
---
L
A
V
G
A
L
T
H
S
V
R
V
L
D
I
G
L
D
M-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
45.68
20%
-80
- C4 -
2RKN
2
DIRL1_ARATH
A:
[4-75]
-------------------------------------------------------
L
C
G
M
S
Q
D
--
E
---
L
N
E
C
K
P
A
V
S
----
K
-------------
E
N
PT--------------------
S
-------------------
P
-----------
S
Q
---
P
C
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
--
N
S
P
W
L
G
S
--------
F
-------
G
---------
V
---------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
44.94
29%
-58
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[6-66]
-------------------------------------------------------------
G
--
Q
---
L
T
V
C
T
G
A
I
A
----
G
-------------
G
A
----------------------
R
-------------------
P
-----------
T
A
---
A
C
C
S
S
L
R
A
----------------------
Q
Q
G
C
F
C
Q
F
A
K
D
P
-
R
Y
G
--------
R
-------
Y
---------
V
---------
N
----------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ITCGQVVSNLTPCITYLQRGGAVPGQCCNGVKTLVSSAQTTADKQTACNCLKSTAATIPNINFGNAGSLPGKCGVNLPYKISPSTNCASIKF
43
99.44
100%
-127
- C- -
M043
-
A:
[1-139]
I
T
C
G
Q
V
V
S
N
L
T
P
C
I
T
Y
L
Q
R
G
G
A
V
P
G
Q
C
C
N
G
V
K
T
L
V
S
S
A
Q
T
T
A
D
K
Q
T
A
C
N
C
L
K
S
T
A
A
T
I
P
N
I
N
F
G
N
A
G
S
L
P
G
K
C
G
V
N
L
P
Y
K
I
S
P
S
T
N
C
A
S
I
K
F
42
98.42
100%
-119
- C- -
M042
-
A:
[1-111]
I
T
C
G
Q
V
V
S
N
L
T
P
C
I
T
Y
L
Q
R
G
G
A
V
P
G
Q
C
C
N
G
V
K
T
L
V
S
S
A
Q
T
T
A
D
K
Q
T
A
C
N
C
L
K
S
T
A
A
T
I
P
N
I
N
F
G
N
A
G
S
L
P
G
K
C
G
V
N
L
P
Y
K
I
S
P
S
T
N
C
A
S
I
K
F
45
98.21
100%
-123
- C- -
M045
-
A:
[1-111]
I
T
C
G
Q
V
V
S
N
L
T
P
C
I
T
Y
L
Q
R
G
G
A
V
P
G
Q
C
C
N
G
V
K
T
L
V
S
S
A
Q
T
T
A
D
K
Q
T
A
C
N
C
L
K
S
T
A
A
T
I
P
N
I
N
F
G
N
A
G
S
L
P
G
K
C
G
V
N
L
P
Y
K
I
S
P
S
T
N
C
A
S
I
K
F
46
96.01
100%
-114
- C- -
M046
-
A:
[1-111]
I
T
C
G
Q
V
V
S
N
L
T
P
C
I
T
Y
L
Q
R
G
G
A
V
P
G
Q
C
C
N
G
V
K
T
L
V
S
S
A
Q
T
T
A
D
K
Q
T
A
C
N
C
L
K
S
T
A
A
T
I
P
N
I
N
F
G
N
A
G
S
L
P
G
K
C
G
V
N
L
P
Y
K
I
S
P
S
T
N
C
A
S
I
K
F