@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-06 )
APLPPCNMIVNQLNPCVPFLTRNMATPSQMCCNGVRYLANYSSSKADRISICQCIEGSRSMFPLVDFSLISDLPASCRVPITLPKITPTFDCSTA
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....------------....10-..---.......20-.----.---.-----------------.---------------.-.-----------.---------------------.30.......--.40...-.....50....--.-..--.---60.------.---------------.----.----.---------...70..--......80---....--.....90....------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------APLPP------------CNMIV--NQ---LNPCVPFLT-R----N---M-----------------A---------------T-P-----------S---------------------QMCCNGVRYL--ANYSSS-KADRISICQCI--E-GS--R---SMF------P---------------L----V----D---------FSLISDL--PASCRVP----ITLP--KITPTFDCSTA------------------------------------------------------------------------------------------------------
12
HHSearch
94.35
29%
-147
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-90]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
------------
C
G
Q
V
T
--
S
N
---
L
A
P
C
L
A
Y
L
R
-
N
----
T
---
G
-----------------------------------
P
-----------
L
---------------------
G
R
C
C
G
G
V
K
A
L
--
V
N
S
A
R
T
-
T
E
D
R
Q
I
A
C
T
C
L
--
K
-
S
A
--
A
---
G
A
I
------
S
---------------
G
----
I
----
N
---------
L
G
K
A
A
G
L
--
P
S
T
C
G
V
N
----
I
P
Y
K
---
I
S
P
S
T
D
C
S
K
V
------------------------------------------------------------------------------------------------------
16
HHSearch
93.69
26%
-145
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-90]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
------------
C
G
Q
V
Q
--
G
N
---
L
A
Q
C
I
G
F
L
Q
-
K
----
G
---------------------
G
---------------
V
-
V
-----------
P
---------------------
P
S
C
C
T
G
V
K
N
I
--
L
N
S
S
R
T
-
T
A
D
R
R
A
V
C
S
C
L
--
K
-
A
A
--
A
---
G
A
V
------
R
---------------
G
----
I
----
N
---------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
----
I
P
Y
K
---
I
S
T
S
T
N
C
N
S
I
------------------------------------------------------------------------------------------------------
11
HHSearch
88.76
27%
-133
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-92]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
------------
C
G
Q
V
A
--
S
A
---
I
A
P
C
I
S
Y
A
R
-
G
----
Q
---
G
-----------------
S
---------------
G
-
P
-----------
S
---------------------
A
G
C
C
S
G
V
R
S
L
--
N
N
A
A
R
T
-
T
A
D
R
R
A
A
C
N
C
L
--
K
-
N
A
--
A
---
A
G
V
------
S
---------------
G
----
L
----
N
---------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
----
I
P
Y
T
---
I
S
T
S
T
D
C
S
R
V
------------------------------------------------------------------------------------------------------
15
HHSearch
87.44
28%
-131
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
------------
C
G
H
V
D
--
S
L
---
V
R
P
C
L
S
Y
V
Q
-
G
----
G
---------------------
P
---------------
G
-
P
-----------
S
---------------------
G
Q
C
C
D
G
V
K
N
L
--
H
N
Q
A
R
S
-
Q
S
D
R
Q
S
A
C
N
C
L
--
K
-
G
I
--
A
---
R
G
I
------
H
---------------
N
----
L
----
N
---------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
----
L
P
Y
T
---
I
S
L
N
I
D
C
S
R
V
------------------------------------------------------------------------------------------------------
13
HHSearch
86.16
27%
-151
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-91]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
------------
C
G
Q
V
S
--
S
S
---
L
A
P
C
I
P
Y
V
R
-
G
----
G
---------------------
G
---------------
A
-
V
-----------
P
---------------------
P
A
C
C
N
G
I
R
N
V
--
N
N
L
A
R
T
-
T
P
D
R
Q
A
A
C
N
C
L
--
K
-
Q
L
--
S
---
A
S
V
------
P
---------------
G
----
V
----
N
---------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
----
I
P
Y
K
---
I
S
A
S
T
N
C
A
T
V
------------------------------------------------------------------------------------------------------
30
SP3
80.62
26%
-140
* C2 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
------------
C
G
Q
V
A
--
S
A
---
I
A
P
C
I
S
Y
A
R
-
G
----
Q
---
G
-----------------
S
---------------
G
-
P
-----------
S
---------------------
A
G
C
C
S
G
V
R
S
L
--
N
N
A
A
R
T
-
T
A
D
R
R
A
A
C
N
C
L
--
K
-
N
A
--
A
---
A
G
V
------
S
---------------
G
----
L
----
N
---------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
----
I
P
Y
T
---
I
S
T
S
T
D
C
S
R
V
N-----------------------------------------------------------------------------------------------------
17
HHSearch
63.96
30%
-131
- C2 -
2RKN
2
DIRL1_ARATH
A:
[2-74]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
L
------------
C
G
M
S
Q
--
D
E
---
L
N
E
C
K
P
A
V
S
-
K
----
E
---
N
-----------------
P
T--------------
S
-
P
-----------
S
---------------------
Q
P
C
C
T
A
L
Q
H
A
-----------
D
F
A
C
L
C
G
Y
K
--
N
-
S
P
W
-
L
---
G
S
F
----------------------
G
----
V
----
D
---------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
----
N
A
---------------------------------------------------------------------------------------------------------------------
24
HHSearch
62.71
20%
-157
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-110]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
---
L
P
S
C
R
W
Y
V
T
-
S
R
TCG
I
---
G
-----------------
P
---------------
R
L
P
W
P
E
L
-------
K
---------------------
R
R
C
C
R
E
L
A
D
I
-----------
P
A
Y
C
R
C
T
A
L
--
S
-
I
L
--
M
---
D
G
A
------
I
P
P
G
PDAQ--------
L
E
G
R
-
L
E
---
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
----
T
I
S
--------------------------------------------------------------------------------------------------------------------
2
Fugue
61.82
30%
-133
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
D
L
------------
C
G
M
S
Q
--
D
E
---
L
N
E
C
K
P
A
V
S
K
E
----
N
---
P
-----------------
T
---------------
S
-
P
-----------
S
---------------------
Q
P
C
C
T
A
L
Q
-----------
H
A
D
F
A
C
L
C
G
Y
K
--
N
-
S
P
--
W
---
L
G
S
------
F
---------------
G
----
V
----
D
---------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
-------------
N
A
P
T
C
---------------------------------------------------------------------------------------------------------
26
HHSearch
58.53
17%
-148
- C2 -
1SM7
-
?
A:
[13-100]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
H
---
L
R
A
C
Q
Q
W
I
R
-
Q
----
Q
---
L
-----------------
A
G
S
P
F
S
E
NQWGPQQGP
S
-
L
-----------
R
---------------------
E
Q
C
C
N
E
L
Y
Q
E
-----------
D
Q
V
C
V
C
P
T
L
--
K
-
Q
A
--
A
---
K
S
V
------
R
VQGQHG---------
P
----
F
QST
R
I
---------
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
----
Q
----------------------------------------------------------------------------------------------------------------------
5
Fugue
58.22
22%
-86
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
F
M
E
S
K
G
E
R
E
G
S
S
SQQ
C
R
Q
E
V
QR
K
D
---
L
S
S
C
E
R
Y
L
R
-
Q
----
S
---
S
-----------------
S
---------------
R
-
R
-----------
S
T
GEEVLRMPGDENQQQESQQL
Q
Q
C
C
N
Q
V
K
Q
V
------
R
D
-
E
C
Q
C
E
A
I
K
Y
I
A
--
E
-
D
Q
--
I
---
Q
Q
G
------
Q
---------------
L
----
H
----
G
EE
S
E
R
V
---
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
R
----
C
M
R
Q
--
T
R
T
N
-------------------------------------------------------------------------------------------------------------
3
Fugue
55.69
16%
-97
- C2 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPMRRERGRQ
G
D
S
S
S
------------
C
E
R
Q
V
--
D
R
VN-
L
K
P
C
E
Q
H
I
M
-
Q
----
R
---
I
MGEQEQYDSYDIRSTR
S
S
---------------
D
-
Q
-----------
Q
---------------------
Q
R
C
C
D
E
L
N
E
M
--
E
N
T
Q
G
C
-
M
C
E
A
L
Q
Q
I
M
E
N
--
Q
-
C
D
--
R
LQD
R
Q
M
------
V
---------------
Q
----
Q
----
F
---------
K
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
----
A
P
Q
R
CD
L
D
V
S
G
G
R
C
S
--------------------------------------------------------------------------------------------------------
7
Fugue
55.00
23%
-113
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
------------
C
N
--
A
--
G
Q
---
L
T
V
C
T
G
A
I
A
-
G
----
G
---------------------
A
---------------
R
-
P
-----------
T
---------------------
A
A
C
C
S
S
L
------------
R
A
Q
Q
G
C
F
C
Q
F
A
--
K
-
D
P
------
R
Y
G
------
R
---------------
Y
----
V
----
N
---------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
----
L
P
----------
T
C
H
--------------------------------------------------------------------------------------------------------
28
HHSearch
54.86
24%
-123
- C2 -
1S6D
-
2SS8_HELAN
A:
[19-97]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
---
L
N
H
C
G
M
Y
L
M
-
K
----
N
---
L
-----------------
G
ERSQVSPR
M
R
E
E
---
D
-
H
-----------
K
---------------------
Q
L
C
C
M
Q
L
K
N
L
--
D
E
---------
K
C
M
C
P
A
I
--
M
-
M
M
--
L
---
N
E
P
------
M
W--------------
I
RMR
D
Q
----
V
---------
M
S
M
A
H
N
L
--
P
I
E
C
N
L
M
---------------------------------------------------------------------------------------------------------------------------
19
HHSearch
54.86
24%
-118
- C2 -
1N89
1
NLT2G_WHEAT
A:
[4-65]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
S
Q
---
L
A
V
C
A
S
A
I
L
-
S
----
G
---------------------
A
---------------
K
-
P
-----------
S
---------------------
G
E
C
C
G
N
L
R
A
--------------
Q
Q
G
C
F
C
Q
YA
K
-
D
P
T-
Y
---
G
Q
-----------------------
Y
----
I
----
R
---------
S
P
H
A
R
D
T
--
L
T
S
C
G
L
A
----
V
P
---------------------------------------------------------------------------------------------------------------------
18
HHSearch
53.98
21%
-138
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[6-66]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Q
---
L
T
V
C
T
G
A
I
A
-
G
----
G
---
A
---------------------------------
R
-
P
-----------
T
---------------------
A
A
C
C
S
S
L
R
A
--------------
Q
Q
G
C
F
C
Q
F
A
K
-
D
P
R-
Y
---
G
R
-----------------------
Y
----
V
----
N
---------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
----
L
P
---------------------------------------------------------------------------------------------------------------------
6
Fugue
53.80
19%
-88
- C2 -
4BUC
3
MURD_THEMA
A:
[16-448]
PRGSH
M
K
I
G
F
LGFG
K
S
N
R
S
L
L
K
Y
L
L
N
H
Q
E
A
K
F
F
V
S
E
A
K
T
L
D
G
E
T
K
K
F
L
E
E
H
S
V
E
Y
E
E
GGHTEKLLDCD
V
V
Y
V
S
PGIKPDT
S
M
I
E
L
L
S
S
R
GV
K
L
S
T
E
L
Q
F
F
L
D
N
VDPKK
V
V
G
I
T
G
TDG
K
S
T
A
T
A
L
M
Y
H
V
L
S
G
R
GFK
T
F
L
G
G
NFGTPAVEALEGEYD
Y
Y
V
L
E
M
S
S
F
Q
L
F
W
SERPYLS
N
F
L
V
LNISEDHLDWHSS
F
K
E
Y
V
D
S
K
L
KPAFLQTEG
D
L
F
V
Y
NKHI
E
R
L
R
N
------------
L
E
G
V
R
--
S
R
---
K
I
P
F
--
W
T
D
-
E
----
N
---
F
-----------------
A
---------------
T
-
E
-----------
K
---------------------
E
L
I
V
R
G
K
K
Y
T
L
P
G
N
Y
P
Y
Q
M
R
E
N
I
L
A
V
S
V
L
Y
M
-
E
M
F
N
EL
E
---
S
F
L
------
E
---------------
L
----
L
R
---
D
---------
F
K
P
L
P
H
R
M-
E
Y
L
G
Q
I
D
G
R
H
F
Y
N
D
S
--
K
A
T
S
T
H
A
V
L
G
A
L
S
N
F
DKVV
L
I
M
C
G
IGKKENY
S
L
F
V
E
K
A
SPKLK
H
L
I
M
F
G
E
I
S
K
E
L
APFVGKIP
H
S
I
V
E
N
M
E
E
A
F
E
K
A
M
E
V
S
EKG
D
V
I
L
L
S
P
GGASFA
K
R
G
E
H
F
R
E
I
F
K
R
H
GGD
25
HHSearch
52.65
14%
-114
- C2 -
1B1U
-
IAAT_ELECO
A:
[15-109]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
---
L
D
S
C
R
W
Y
V
S
-
T
----
R
---
T
CG---------------
V
---------------
G
-
P
RLA
T
Q
E
M
----
K
---------------------
A
R
C
C
R
Q
L
E
A
I
-----------
P
A
Y
C
R
C
E
A
V
--
R
-
I
L
--
M
---
D
G
V
------
V
T
PSG
Q
H
E
G
RLLQDLP
G
CP--
R
----
Q
V
Q
R
A
-----
F
A
P
K
L
V
T
--
E
V
E
C
N
L
A
----
T
I
H
--------------------------------------------------------------------------------------------------------------------
8
Fugue
51.90
16%
-103
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
------------
C
Y
Q
Q
M
--
E
E
A
EM
L
N
H
C
G
M
Y
L
M
-
K
----
N
---
L
-----------------
G
---------------
E
-
R
-----------
S
QVSPR
M
R
E
E
D
H
K
---------
Q
L
C
C
M
Q
L
K
N
L
--
D
-----------
E
K
C
M
C
P
--
A
-
I
M
--
M
---
M
L
N
------
E
---------------
P
----
M
----
W
---------
I
R
M
R
D
Q
V
--
M
S
M
A
H
N
L
----
P
I
E
C
--
N
L
M
S
Q
-
P
C
Q
M
-------------------------------------------------------------------------------------------------------
29
HHSearch
49.87
22%
-105
- C2 -
1PSY
-
2SS_RICCO
A:
[25-120]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
---
L
S
S
C
E
R
Y
L
R
-
Q
----
S
S
S
R
R
-----------------
S
T
GEEVLR--------
M
-
P
GDENQQQESQQ
L
---------------------
Q
Q
C
C
N
Q
V
K
Q
V
-----------
R
D
E
C
Q
C
E
A
I
--
K
-
Y
I
--
A
---
E
D
Q
I
Q
Q
G
QL
H
---------------
G
EE
S
E
R
----
V
---------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
R
----
C
M
R
--------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(1 SA)
.........10........20........30........40........50........60........70........80........90....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
APLPPCNMIVNQLNPCVPFLTRNMATPSQMCCNGVRYLANYSSSKADRISICQCIEGSRSMFPLVDFSLISDLPASCRVPITLPKITPTFDCSTA
43
45.80
100%
-28
- C- -
M043
-
A:
[3-95]
A
P
L
P
P
C
N
M
I
V
N
Q
L
N
P
C
V
P
F
L
T
R
N
M
A
T
P
S
Q
M
C
C
N
G
V
R
Y
L
A
N
Y
S
S
S
K
A
D
R
I
S
I
C
Q
C
I
E
G
S
R
S
M
F
P
L
V
D
F
S
L
I
S
D
L
P
A
S
C
R
V
P
I
T
L
P
K
I
T
P
T
F
D
C
S
T
A