@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-06 )
IDCAQVNLLLGTCMPYLIGFDSSPSLACCAGVRNLKRLAPTTADRRVACDCVKAAAARHPNIRDDAASTLPNKCGVDFNIPVSNTTKCQE
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------......--..--.10.......----.---20---.----.------------.--------.-----------.---------------------...---.30........40----------.........50....-...-.------60------.---------.-------.----------.----------.....70-.........80........90-------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------IDCAQV--NL--LLGTCMPYLI----G---F----D----S------------S--------P-----------S---------------------LAC---CAGVRNLKRLAP-----------TTADRRVACDCVKAA-AAR-H------P-------N---------I-------R----------D----------DAASTL--PNKCGVDFNIPVSNTTKCQE--------
23
HHSearch
88.93
38%
-132
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-89]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
--
D
S
--
L
V
R
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Y
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---
G
---------
P
------------
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--------
P
-----------
S
---------------------
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Q
C
---
C
D
G
V
K
N
L
H
N
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A
R
-----------
S
Q
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D
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Q
S
A
C
N
C
L
K
G
I
-
A
R
G
-
I
------
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-------
N
---------
L
-------
N
----------
E
----------
D
N
A
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--
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G
V
N
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P
Y
T
I
S
L
N
I
D
C
S
R
--------
25
HHSearch
88.84
42%
-139
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[2-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
G
Q
V
--
S
S
--
S
L
A
P
C
I
P
Y
V
R
----
G
---
G
---------
G
------------
A
--------
V
-----------
P
---------------------
P
A
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
K
Q
L
-
S
A
S
-
V
------
P
-------
G
---------
V
-------
N
----------
P
----------
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
I
S
A
S
T
N
C
A
T
--------
22
HHSearch
88.52
40%
-134
- C2 -
1T12
-
NLTP1_TOBAC
A:
[2-89]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
G
Q
V
--
T
S
--
N
L
A
P
C
L
A
Y
L
R
----
N
---
T
----
G
--------------------------
P
-----------
L
---------------------
G
R
C
---
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
L
K
S
A
-
A
G
A
-
I
------
S
-------
G
---------
I
-------
N
----------
L
----------
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
Y
K
I
S
P
S
T
D
C
S
K
--------
21
HHSearch
88.02
43%
-123
- C2 -
1AFH
-
NLTP_MAIZE
A:
[2-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
C
G
Q
V
--
A
S
--
A
I
A
P
C
I
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Y
A
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---
Q
----
G
----
S
------------
G
--------
P
-----------
S
---------------------
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
G
-
V
------
S
-------
G
---------
L
-------
N
----------
A
----------
G
N
A
A
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--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
--------
11
SP3
87.22
43%
-121
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
S
C
G
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V
--
A
S
--
A
I
A
P
C
I
S
Y
A
R
----
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---
Q
----
G
----
S
------------
G
--------
P
-----------
S
---------------------
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
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N
C
L
K
N
A
-
A
A
G
-
V
------
S
-------
G
---------
L
-------
N
----------
A
----------
G
N
A
A
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--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
VN------
26
HHSearch
83.45
38%
-140
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-89]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
--
Q
G
--
N
L
A
Q
C
I
G
F
L
Q
----
K
---
G
---------
G
------------
V
--------
V
-----------
P
---------------------
P
S
C
---
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
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A
V
C
S
C
L
K
A
A
-
A
G
A
-
V
------
R
-------
G
---------
I
-------
N
----------
P
----------
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
I
S
T
S
T
N
C
N
S
--------
36
HHSearch
58.78
24%
-134
- C2 -
1SM7
-
?
A:
[14-101]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
L
R
A
C
Q
Q
W
I
R
----
Q
---
Q
----
L
AG
S
-
P
F
S
E
NQWGPQQGP
S
--------
L
-----------
R
---------------------
E
Q
C
---
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
K
Q
A
-
A
K
S
-
V
------
R
VQ-----
G
Q--------
H
GPFQST
R
I
----------
Y
----------
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
-------------------
32
HHSearch
57.55
24%
-104
- C2 -
1PSY
-
2SS_RICCO
A:
[25-121]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
D
L
S
S
C
E
R
Y
L
R
----
Q
---
S
S
S
--
R
----
R
------------
S
T
GEEVLRM
P
GDENQQQESQQ
L
---------------------
Q
Q
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
D
-
Q
------
I
Q
Q
G
QLH-
G
---------
E
E
S
E
R
---
V
----------
A
----------
Q
R
A
G
E
I
--
V
S
S
C
G
V
--
R
C
M
R
Q
---------------
9
Fugue
57.30
24%
-90
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
----------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
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E
VQ
R
K
--
D
L
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C
E
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Y
L
R
----
Q
---
S
----
S
----
S
------------
R
--------
R
-----------
S
T
GEEVLRMPGDENQQQESQQL
Q
Q
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
D
-
Q
------
I
-------
Q
---------
Q
-------
G
----------
Q
LHGEE
S
E
R
V
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
R
---
C
M
R
Q
T
R
T
N
----------
6
Fugue
55.25
21%
-113
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
E
--
A
E
--
M
L
N
H
C
G
M
Y
L
M
----
K
---
N
----
L
----
G
------------
E
--------
R
-----------
S
QVSPR
M
R
E
E
D
H
K
---------
Q
L
C
---
C
M
Q
L
K
N
L
D
E
K
C
M
-------------------
C
P
A
I
M
M
M
-
L
N
E
-
P
------
M
WIRMR--
D
---------
Q
-------
V
----------
M
----------
S
M
A
H
N
L
--
P
I
E
C
N
L
-------
M
S
Q
P
C
Q
M
--------
35
HHSearch
54.60
17%
-157
- C2 -
1BEA
-
ITRF_MAIZE
A:
[16-110]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
P
S
C
R
W
Y
V
T
S
R
TC
G
---
I
----
G
----
P
------------
R
--------
L
P
W
P
E
L
------
K
---------------------
R
R
C
---
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
S
I
L
-
M
D
G
-
A
------
I
P
P
G
PDAQ
L
E
G
R
------
L
-------
E
D
LPGCP
R
E
V
Q
R
----------
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
S
------------------
2
Fugue
52.67
27%
-85
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AI
D
L
C
G
M
S
--
Q
D
--
E
L
N
E
C
K
P
A
V
S
----
K
---
E
----
N
P---
T
------------
S
--------
P
-----------
S
---------------------
Q
P
C
---
C
T
A
L
Q
H
-------------------
A
D
F
A
C
L
C
G
Y
K
N
S
P
-
W
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G
-
S
------
F
-------
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---------
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-------
D
----------
P
----------
E
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A
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A
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--
P
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C
G
L
------
A
N
A
P
T
C
----------
40
HHSearch
52.13
21%
-122
- C2 -
1S6D
-
2SS8_HELAN
A:
[19-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
--
M
L
N
H
C
G
M
Y
L
M
----
K
---
N
----
L
GERS
Q
VSPR
M
R
E
E
----
D
--------
H
-----------
K
---------------------
Q
L
C
---
C
M
Q
L
K
N
L
D
-------------------
E
K
C
M
C
P
A
I
M
M
M
-
L
N
E
-
P
------
M
-------
W
IRMR
D
----
Q
-------
V
----------
M
----------
S
M
A
H
N
L
--
P
I
E
C
N
L
M
---------------------
38
HHSearch
51.97
16%
-149
- C2 -
1HSS
-
IAA1_WHEAT
A:
[15-104]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
--
A
L
P
A
C
R
P
L
L
R
----
L
---
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C
N
G-
S
----
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------------
V
--------
P
E
A
V
--------
L
---------------------
R
D
C
---
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
S
-
M
------
Y
K
E
HGAFP
R
CR
R
E
-----
V
-------
V
----------
K
----------
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
-------------------
27
HHSearch
50.40
24%
-101
- C2 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
--
Q
D
--
E
L
N
E
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A
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---
E
----
N
----
P
T-----------
S
--------
P
-----------
S
---------------------
Q
P
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
S
P
W
L
G
S
-
F
--------------
G
---------
V
-------
D
----------
P
----------
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
------------------
13
SP3
45.88
17%
-118
- C2 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
--
A
A
A
G
S
V
V
D
A
L
R
A
V
R
----
N
-------------
A
------------
A
--------
P
-----------
D
---------------------
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
T
-
V
M
L
E
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S
-
G
-------
G
---------
L
-------
S
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----------
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A
A
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---
A
E
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D
Y
-
L
A
V
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A
L
T
H
S
V
R
VL
D
I
G
L
D
M
41
HHSearch
45.58
16%
-123
- C2 -
2LVF
-
?
A:
[16-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
M
L
S
H
C
R
M
Y
M
R
----
Q
Q
M
E
E
----
S
----
T
------------
Y
--------
Q
TMPRRGMEP
H
-
M
---------------------
S
E
C
---
C
E
Q
L
E
G
M
-------------------
D
E
S
C
R
C
E
G
L
R
M
M
-
M
R
M
M
Q
Q
K
EM
Q
P
R
-------
G
E
Q
M
R
-----
R
-------
M
----------
M
----------
R
L
A
E
N
I
--
P
S
R
C
N
L
S
---------------------
39
HHSearch
45.40
12%
-117
- C2 -
1W2Q
-
CONG_ARAHY
A:
[23-114]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--
N
L
K
P
C
E
Q
H
I
M
----
Q
---
R
I
MG-
E
QE--
Q
Y-----------
D
--------
S
YDIRSTR
S
S
D
Q
Q
---------------------
Q
R
C
---
C
D
E
L
N
E
M
E
---------------
N
--
T
Q
G
C
M
C
E
A
L
Q
Q
I
-
M
E
N
-
Q
------
C
DRLQ---
D
---------
R
-------
Q
MV
Q
Q
F
-----
K
----------
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
-------------------
16
SP3
44.62
17%
-118
- C2 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
--
A
A
A
G
S
V
V
D
A
L
R
A
V
R
----
N
-------------
A
------------
A
--------
P
-----------
D
---------------------
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
T
-
V
M
L
E
S
S
-
G
-------
G
---------
L
-------
S
----------
L
----------
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
-
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M
34
HHSearch
44.57
12%
-113
- C2 -
1B1U
-
IAAT_ELECO
A:
[15-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
L
D
S
C
R
W
Y
V
S
----
T
---
R
T
CGV
G
----
P
------------
R
LA
T
Q
E
---
M
-----------
K
---------------------
A
R
C
---
C
R
Q
L
E
A
I
-------------------
P
A
Y
C
R
C
E
A
V
R
I
L
-
M
D
G
-
V
------
V
T
PS----
G
Q
H
E
G
RLLQD
L
-------
P
GCP
R
Q
V
Q
R
A
-
F
----------
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
H
------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
IDCAQVNLLLGTCMPYLIGFDSSPSLACCAGVRNLKRLAPTTADRRVACDCVKAAAARHPNIRDDAASTLPNKCGVDFNIPVSNTTKCQE
42
95.98
100%
-157
- C- -
M042
-
A:
[1-115]
I
D
C
A
Q
V
N
L
L
L
G
T
C
M
P
Y
L
I
G
F
D
S
S
P
S
L
A
C
C
A
G
V
R
N
L
K
R
L
A
P
T
T
A
D
R
R
V
A
C
D
C
V
K
A
A
A
A
R
H
P
N
I
R
D
D
A
A
S
T
L
P
N
K
C
G
V
D
F
N
I
P
V
S
N
T
T
K
C
Q
E
48
95.64
100%
-143
- C- -
M048
-
A:
[1-280]
I
D
C
A
Q
V
N
L
L
L
G
T
C
M
P
Y
L
I
G
F
D
S
S
P
S
L
A
C
C
A
G
V
R
N
L
K
R
L
A
P
T
T
A
D
R
R
V
A
C
D
C
V
K
A
A
A
A
R
H
P
N
I
R
D
D
A
A
S
T
L
P
N
K
C
G
V
D
F
N
I
P
V
S
N
T
T
K
C
Q
E
47
92.10
100%
-136
- C- -
M047
-
A:
[1-107]
I
D
C
A
Q
V
N
L
L
L
G
T
C
M
P
Y
L
I
G
F
D
S
S
P
S
L
A
C
C
A
G
V
R
N
L
K
R
L
A
P
T
T
A
D
R
R
V
A
C
D
C
V
K
A
A
A
A
R
H
P
N
I
R
D
D
A
A
S
T
L
P
N
K
C
G
V
D
F
N
I
P
V
S
N
T
T
K
C
Q
E
44
89.79
100%
-143
- C- -
M044
-
A:
[1-125]
I
D
C
A
Q
V
N
L
L
L
G
T
C
M
P
Y
L
I
G
F
D
S
S
P
S
L
A
C
C
A
G
V
R
N
L
K
R
L
A
P
T
T
A
D
R
R
V
A
C
D
C
V
K
A
A
A
A
R
H
P
N
I
R
D
D
A
A
S
T
L
P
N
K
C
G
V
D
F
N
I
P
V
S
N
T
T
K
C
Q
E