@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-06 )
AVPCSTVDMKAAACVGFATGKDSKPSQACCTGLQQLAQTVKTVDDKKAICRCLKASSKSLGIKDQFLSKIPAACNIKVGFPVSTNTNCETIH
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......-..--10.........----20--.------.----.------------.-----------.-----------.---...---30....--....40.---------------...-----------....50...-..-...60-------.---------.-------.----------......70-......--...80........90.----------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVPCSTV-DM--K-AAACVGFAT----G---K------D----S------------K-----------P-----------S---QAC---CTGLQQ--LAQTVKT---------------VDD-----------KKAICRCLK-AS-SKSL--------G---------I-------K----------DQFLSKI--PAACNI--KVGFPVSTNTNCETIH----------------------------------------------------
21
HHSearch
96.61
32%
-90
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
-
A
S
--
A
-
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----
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---
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------
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----
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------------
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-----------
P
-----------
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---
A
G
C
---
C
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G
V
R
S
--
L
N
N
A
A
R
T
---------------
T
A
D
-----------
R
R
A
A
C
N
C
L
K
-
N
A
-
A
A
G
V
S-------
G
---------
L
-------
N
----------
A
G
N
A
A
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--
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K
C
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V
--
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
----------------------------------------------------
24
HHSearch
96.18
29%
-114
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
Q
V
-
S
S
--
S
-
L
A
P
C
I
P
Y
V
R
----
G
---
G
-----------
G
------------
A
-----------
V
-----------
P
---
P
A
C
---
C
N
G
I
R
N
--
V
N
N
L
A
R
T
---------------
T
P
D
-----------
R
Q
A
A
C
N
C
L
K
-
Q
L
-
S
A
S
V
P-------
G
---------
V
-------
N
----------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
--
S
I
P
Y
K
I
S
A
S
T
N
C
A
T
V
K
----------------------------------------------------
11
SP3
95.88
31%
-97
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
-
A
S
--
A
-
I
A
P
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I
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Y
A
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----
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---
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------
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----
S
------------
G
-----------
P
-----------
S
---
A
G
C
---
C
S
G
V
R
S
--
L
N
N
A
A
R
T
---------------
T
A
D
-----------
R
R
A
A
C
N
C
L
K
-
N
A
-
A
A
G
V
S-------
G
---------
L
-------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
--
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
----------------------------------------------------
25
HHSearch
94.59
31%
-109
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
-
Q
G
--
N
-
L
A
Q
C
I
G
F
L
Q
----
K
---
G
-----------
G
------------
V
-----------
V
-----------
P
---
P
S
C
---
C
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N
--
I
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N
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S
R
T
---------------
T
A
D
-----------
R
R
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C
L
K
-
A
A
-
A
G
A
V
R-------
G
---------
I
-------
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----------
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N
N
A
E
A
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--
P
G
K
C
G
V
--
N
I
P
Y
K
I
S
T
S
T
N
C
N
S
I
N
----------------------------------------------------
22
HHSearch
87.87
26%
-111
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
C
G
Q
V
-
T
S
--
N
-
L
A
P
C
L
A
Y
L
R
----
N
---
T
------
G
-----------------------------
P
-----------
L
---
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---
C
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A
--
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---------------
T
E
D
-----------
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A
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T
C
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-
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A
-
A
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A
I
S-------
G
---------
I
-------
N
----------
L
G
K
A
A
G
L
--
P
S
T
C
G
V
--
N
I
P
Y
K
I
S
P
S
T
D
C
S
K
V
Q
----------------------------------------------------
26
HHSearch
85.65
25%
-105
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
-
D
S
--
L
-
V
R
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----
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---
G
-----------
P
------------
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-----------
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-----------
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---
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---
C
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K
N
--
L
H
N
Q
A
R
S
---------------
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D
-----------
R
Q
S
A
C
N
C
L
K
-
G
I
-
A
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I
H-------
N
---------
L
-------
N
----------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
--
N
L
P
Y
T
I
S
L
N
I
D
C
S
R
V
-----------------------------------------------------
37
HHSearch
74.19
29%
-112
- C2 -
1SM7
-
?
A:
[14-101]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
-
L
R
A
C
Q
Q
W
I
R
----
Q
---
Q
------
L
AG
S
-
P
F
S
E
NQWGPQQGP
S
-----------
L
-----------
R
---
E
Q
C
---
C
N
E
L
Y
Q
--
E
-----------------------
D
-----------
Q
V
C
V
C
P
T
L
K
-
Q
A
-
A
K
S
V
RVQ-----
G
Q--------
H
-------
G
PFQST
R
I
---
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
--
K
Q
I
-----------------------------------------------------------------
39
HHSearch
65.46
17%
-110
- C2 -
1W2Q
-
CONG_ARAHY
A:
[23-114]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--
N
-
L
K
P
C
E
Q
H
I
M
----
Q
---
R
I
MGEQE
Q
----
Y
------------
D
-----------
S
YDIRSTR
S
S
D
Q
Q
---
Q
R
C
---
C
D
E
L
N
E
--
M
E
----
N
-----------------
T
-----------
Q
G
C
M
C
E
A
L
Q
-
Q
I
-
M
E
N
Q
CDRLQ---
D
---------
R
QMV
Q
---
Q
F
---------
K
R
E
L
M
S
L
--
P
Q
Q
C
N
F
--
R
A
P
-----------------------------------------------------------------
34
HHSearch
65.07
19%
-114
- C2 -
1BEA
-
ITRF_MAIZE
A:
[16-109]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
-
L
P
S
C
R
W
Y
V
T
S
R
TC
G
---
I
------
G
----
P
------------
R
-----------
L
P
W
P
E
L
------
K
---
R
R
C
---
C
R
E
L
A
D
--
I
-----------------------
P
-----------
A
Y
C
R
C
T
A
L
S
-
I
L
-
M
D
G
A
I
P
P
G
----
P
---------
D
AQL
E
G
R
L
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
--
A
T
I
-----------------------------------------------------------------
27
HHSearch
64.58
24%
-95
- C2 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
-
Q
D
--
E
-
L
N
E
C
K
P
A
V
S
----
K
---
E
------
N
----
P
T-----------
S
-----------
P
-----------
S
---
Q
P
C
---
C
T
A
L
Q
H
--
A
-----------------------
D
-----------
F
A
C
L
C
G
Y
K
N
-
S
P
W
L
G
S
F
--------
G
---------
V
-------
D
----------
P
E
L
A
S
A
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--
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C
G
L
--
A
N
A
P
----------------------------------------------------------------
2
Fugue
64.31
24%
-85
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
D
L
C
G
M
S
-
Q
D
--
E
-
L
N
E
C
K
P
A
V
S
----
K
---
E
------
N
P---
T
------------
S
-----------
P
-----------
S
---
Q
P
C
---
C
T
A
L
Q
H
--
A
-----------------------
D
-----------
F
A
C
L
C
G
Y
K
N
S
P
W
-
L
G
S
F
--------
G
---------
V
-------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
--------
L
A
N
A
P
T
C
--------------------------------------------------------
20
SP3
62.95
15%
-106
- C2 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
------------------------------------------------------------------------------------------------------------------------------------------------------------------MCYPGQ
A
F
Q
-----
V
P
--
A
-
L
P
A
C
R
P
L
L
R
----
L
Q
C
N
G
------
S
----
Q
------------
V
-----------
P
-----------
E
A
V
L
R
D
C
---
C
Q
Q
L
A
H
--
I
-----------------------
S
-----------
E
W
C
R
C
G
A
L
Y
-
S
M
-
L
D
S
M
Y
K
E
HGAFP
R
---------
C
-------
R
R
E
V
V
------
K
L
T
A
A
S
I
--
T
A
V
C
R
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--
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D
A
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D
G
A
Y
V
C
K
D
V
A
A
YPDA-------------------------------------------
33
HHSearch
58.96
18%
-72
- C2 -
1PSY
-
2SS_RICCO
A:
[26-117]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
L
S
S
C
E
R
Y
L
R
----
Q
---
S
S
S
----
R
----
R
S
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GEEVLR----
M
PGDENQQQESQ
Q
-----------
L
---
Q
Q
C
---
C
N
Q
V
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--
V
-----------------------
R
-----------
D
E
C
Q
C
E
A
I
K
-
Y
I
-
A
E
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I
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Q
-----
G
Q--------
L
HGEE
S
E
R
V
----------
A
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A
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I
--
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S
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C
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--
R
-------------------------------------------------------------------
40
HHSearch
57.67
18%
-85
- C2 -
1S6D
-
2SS8_HELAN
A:
[19-97]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
--
M
-
L
N
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Y
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M
----
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---
N
------
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GERS
Q
VSPR
M
R
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----
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-----------
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-----------
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---
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C
---
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M
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--
L
D
----------------------------------
E
K
C
M
C
P
A
I
M
-
M
M
-
L
N
E
P
MW------
I
RMR
D
-----
Q
-------
V
----------
M
S
M
A
H
N
L
--
P
I
E
C
N
L
--
M
-------------------------------------------------------------------
35
HHSearch
56.35
19%
-85
- C2 -
3OB4
-
?
A:
[429-485]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
C
---
C
N
E
L
N
E
--
F
E
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-----------
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R
C
M
C
E
A
L
Q
-
Q
I
-
M
E
N
Q
S
DRLQ---
G
---------
R
-------
Q
Q
E
Q
Q
F
-----
K
R
E
L
R
N
L
--
P
Q
Q
C
G
L
--
R
A
P
-----------------------------------------------------------------
17
SP3
55.59
9%
-106
- C2 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
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VPAS
A
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T
A
S
LVTR
E
A
G
V
V
A
G
L
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V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
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N
L
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T
A
A
W
V
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A
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RGTK
A
K
I
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D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
-
A
A
A
G
S
-
V
V
D
A
L
R
A
V
R
---------------
N
----
A
------------
A
-----------
P
-----------
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---
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S
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E
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--
L
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LDNFA
V
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---
A
E
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--
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Y
---
L
A
V
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A
L
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H
S
V
R
VL
D
I
G
L
D
M--------------------------------------------
9
Fugue
55.35
25%
-46
- C2 -
4B8V
3
?
A:
[36-224]
---------------------------------------------------------------------------------------------------------------------CGSTSNIK
Y
T
V
V
KGDT
L
T
S
I
A
K
K
F
KSG
I
C
N
I
V
S
V
N
KLANPNLIELG
A
T
L
I
I
P
E
N
C
S
N
P
-
D
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----
A
------------
E
-----------
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G
---
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Y
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F
N
-
I
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--------
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Q
I
E
N
---
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D
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C
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AGDL
F
V
D
L
A
A
T
Y
HTT
I
G
Q
I
K
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NNVNPSKLKVG
Q
Q
I
I
L
P
Q
D
C
K
N
V
T
4
Fugue
53.20
22%
-70
- C2 -
2OP5
4
?
A:
[5-115]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TDET
A
F
L
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F
M
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--
T
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E
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F
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------
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-----------
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---
E
D
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---
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WNKEQH
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-----------
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---------
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-------
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---------
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--
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--
N
R
G
V
V
V
S
E
F
I
R
---------------------------------------------------------
36
HHSearch
49.63
13%
-76
- C2 -
1B1U
-
IAAT_ELECO
A:
[16-109]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
-
L
D
S
C
R
W
Y
V
S
----
T
---
R
T
CGV--
G
----
P
------------
R
LA
T
Q
E
------
M
-----------
K
---
A
R
C
---
C
R
Q
L
E
A
--
I
-----------------------
P
-----------
A
Y
C
R
C
E
A
V
R
-
I
L
-
M
D
G
V
V
T
PS----
G
Q
H
E
G
RLLQD
L
-------
P
GCP
R
Q
V
Q
R
A
-
F
A
P
K
L
V
T
--
E
V
E
C
N
L
--
A
T
I
H
----------------------------------------------------------------
3
Fugue
49.33
21%
-34
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
N
A
G
-----
Q
-
L
T
V
C
T
G
A
I
A
----
G
----------
G
----
A
------------
R
-----------
P
-----------
T
---
A
A
C
---
C
S
S
L
R
A
--------------------------
Q
-----------
Q
G
C
F
C
Q
F
A
K
-
D
P
-
R
Y
G
R
--------
Y
---------
V
-------
N
----------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
--
A
-------
L
P
T
C
H
-------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70........80........90.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AVPCSTVDMKAAACVGFATGKDSKPSQACCTGLQQLAQTVKTVDDKKAICRCLKASSKSLGIKDQFLSKIPAACNIKVGFPVSTNTNCETIH
45
98.31
100%
-120
- C- -
M045
-
A:
[1-93]
A
V
P
C
S
T
V
D
M
K
A
A
A
C
V
G
F
A
T
G
K
D
S
K
P
S
Q
A
C
C
T
G
L
Q
Q
L
A
Q
T
V
K
T
V
D
D
K
K
A
I
C
R
C
L
K
A
S
S
K
S
L
G
I
K
D
Q
F
L
S
K
I
P
A
A
C
N
I
K
V
G
F
P
V
S
T
N
T
N
C
E
T
I
H
43
97.52
100%
-128
- C- -
M043
-
A:
[1-140]
A
V
P
C
S
T
V
D
M
K
A
A
A
C
V
G
F
A
T
G
K
D
S
K
P
S
Q
A
C
C
T
G
L
Q
Q
L
A
Q
T
V
K
T
V
D
D
K
K
A
I
C
R
C
L
K
A
S
S
K
S
L
G
I
K
D
Q
F
L
S
K
I
P
A
A
C
N
I
K
V
G
F
P
V
S
T
N
T
N
C
E
T
I
H