@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-06 )
AIGCGAVVSYLNPCLPYVTNKGPLGGCCGGIKGLYGAAKTTPDRQSVCNCLKTLASSYKGVNLGKAAGLPGQCGVSIPYKISPSTDCSKVK
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........---10-.........----20---.--------------.---.-----------------------.----------...---..30........-----------40........50...-...-.------------.-------60--------.---------.----------.......--70........--.80.--.......90--------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------AIGCGAVVS---Y--LNPCLPYVT----N----K--------------G---P-----------------------L----------GGC---CGGIKGLYGAAK-----------TTPDRQSVCNCLKTL-ASS-Y------------K-------G---------V---------N----------LGKAAGL--P-GQCGVSIP--YKIS--PSTDCSKVK--------
21
HHSearch
96.19
66%
-145
- C4 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
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G
Q
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T
S
---
N
--
L
A
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A
Y
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R
----
N
----
T
--------------
G
---
P
-----------------------
L
----------
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R
C
---
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
L
K
S
A
-
A
G
A
-
I
------------
S
-------
G
---------
I
---------
N
----------
L
G
K
A
A
G
L
--
P
-
S
T
C
G
V
N
I
P
--
Y
K
I
S
--
P
S
T
D
C
S
K
V
Q
--------
22
HHSearch
86.35
58%
-136
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
Q
V
S
S
---
S
--
L
A
P
C
I
P
Y
V
R
----
G
----
G
--------------
G
A--
V
-----------------------
P
----------
P
A
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
K
Q
L
-
S
A
S
-
V
------------
P
-------
G
---------
V
---------
N
----------
P
N
N
A
A
A
L
--
P
-
G
K
C
G
V
S
I
P
--
Y
K
I
S
--
A
S
T
N
C
A
T
V
K
--------
26
HHSearch
82.14
47%
-137
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
D
S
---
L
--
V
R
P
C
L
S
Y
V
Q
----
G
----
G
--------------
P
G--
P
-----------------------
S
----------
G
Q
C
---
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
L
K
G
I
-
A
R
G
-
I
------------
H
-------
N
---------
L
---------
N
----------
E
D
N
A
R
S
I
--
P
-
P
K
C
G
V
N
L
P
--
Y
T
I
S
--
L
N
I
D
C
S
R
V
---------
11
SP3
80.41
53%
-133
- C4 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
S
---
A
--
I
A
P
C
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Y
A
R
----
G
----
Q
--------------
G
SG-
P
-----------------------
S
----------
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
G
-
V
------------
S
-------
G
---------
L
---------
N
----------
A
G
N
A
A
S
I
--
P
-
S
K
C
G
V
S
I
P
--
Y
T
I
S
--
T
S
T
D
C
S
R
V
N
--------
25
HHSearch
79.89
42%
-141
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
Q
G
---
N
--
L
A
Q
C
I
G
F
L
Q
----
K
----
G
--------------
G
V--
V
-----------------------
P
----------
P
S
C
---
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
L
K
A
A
-
A
G
A
-
V
------------
R
-------
G
---------
I
---------
N
----------
P
N
N
A
E
A
L
--
P
-
G
K
C
G
V
N
I
P
--
Y
K
I
S
--
T
S
T
N
C
N
S
I
N
--------
23
HHSearch
79.46
54%
-124
- C4 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
S
---
A
--
I
A
P
C
I
S
Y
A
R
----
G
----
Q
--------------
G
SG-
P
-----------------------
S
----------
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
G
-
V
------------
S
-------
G
---------
L
---------
N
----------
A
G
N
A
A
S
I
--
P
-
S
K
C
G
V
S
I
P
--
Y
T
I
S
--
T
S
T
D
C
S
R
V
N
--------
5
Fugue
61.31
24%
-133
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
A
E
M
--
L
N
H
C
G
M
Y
L
M
----
K
----
N
LGERSQVSPR
M
R
E
E
D
---
H
-----------------------
K
----------
Q
L
C
---
C
M
Q
L
K
N
L
-------------------
D
E
K
C
M
C
P
A
I
M
M
M
-
L
N
E
-
P
------------
M
-------
W
---------
I
---------
R
MR
D
Q
V
-----
M
S
M
A
H
N
L
--
P
-
I
E
C
N
L
M
-----------
S
Q
P
C
Q
M
----------
34
HHSearch
57.91
27%
-165
- C4 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
---
P
--
L
P
S
C
R
W
Y
V
T
S
R
TC
G
----
I
--------------
G
---
P
-----------------------
R
LP
W
P
E
L
K
---
R
R
C
---
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
S
I
L
-
M
D
G
-
A
------------
I
P
P
G
PDAQ
L
E
G
R
------
L
---------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
-
A
E
C
N
L
A
T
I
-------------------------
33
HHSearch
55.05
29%
-133
- C4 -
1SM7
-
?
A:
[13-101]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
---
H
--
L
R
A
C
Q
Q
W
I
R
----
Q
QLA-
G
--------------
S
---
P
F
S
E
NQWGPQQGPS----------
L
R
---------
E
Q
C
---
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
K
Q
A
-
A
K
S
-
V
------------
R
VQ-----
G
Q--------
H
GPFQST
R
--
I
----------
Y
Q
I
A
K
N
L
--
P
-
N
V
C
N
M
K
Q
I
-------------------------
40
HHSearch
54.92
24%
-156
* C4 *
1HSS
-
IAA1_WHEAT
A:
[15-105]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
---
A
--
L
P
A
C
R
P
L
L
R
----
L
Q
C
--
N
--------------
G
---
S
-----------------------
Q
VP
E
A
V
L
----
R
D
C
---
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
S
-
M
------------
Y
K
E
H-----GAFPRCR
R
E
V
---------
V
----------
K
L
T
A
A
S
I
--
T
-
A
V
C
R
L
P
I
V
--
V
----------------------
10
Fugue
53.73
23%
-116
- C4 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------MC
Y
P
G
Q
A
F
Q
V
P
---
A
--
L
P
A
C
R
P
L
L
R
----
L
----
Q
C
N
GSQVP
E
------
A
---
V
-----------------------
L
----------
R
D
C
---
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
S
--
M
Y
K
E
HGAFPRCR
R
-------
E
---------
V
---------
V
----------
K
L
T
A
A
S
I
--
T
A-
V
C
R
L
P
I
V
--
V
D
A
S
GD
G
A
Y
V
C
K
D
V
A
A
YPDA---
41
HHSearch
51.72
23%
-113
- C4 -
2LVF
-
?
A:
[16-101]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
---
M
--
L
S
H
C
R
M
Y
M
R
Q
Q
M
E
E
----
S
--------------
T
Y--
Q
-----------------------
T
MPRRGMEP
H
M
S
E
C
---
C
E
Q
L
E
G
M
-------------------
D
E
S
C
R
C
E
G
L
R
M
M
-
M
R
M
M
Q
Q
K
EM
Q
P
------
R
-------
G
E
Q
M
R
-----
R
---------
M
----------
M
R
L
A
E
N
I
--
P
-
S
R
C
N
L
S
---------------------------
39
HHSearch
50.38
17%
-129
- C4 -
1W2Q
-
CONG_ARAHY
A:
[23-121]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
---
N
--
L
K
P
C
E
Q
H
I
M
----
Q
R
I
M-
G
--------------
E
QE-
Q
YDSYDIRSTR
S
S
D
Q
---------
Q
----------
Q
R
C
---
C
D
E
L
N
E
M
E
----------------
N
-
T
Q
G
C
M
C
E
A
L
Q
Q
I
-
M
E
N
-
Q
------------
C
DRLQ---
D
---------
R
---------
Q
MV
Q
Q
F
-----
K
R
E
L
M
S
L
--
P
-
Q
Q
C
N
F
R
A
P
QR
C
D
L
D
--
V
----------------
37
HHSearch
50.15
22%
-139
- C4 -
1S6D
-
2SS8_HELAN
A:
[19-97]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
---
M
--
L
N
H
C
G
M
Y
L
M
----
K
NLGE
R
--------------
S
---
Q
-----------------------
V
SPR
M
R
E
E
D
H
K
Q
L
C
---
C
M
Q
L
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N
L
D
-------------------
E
K
C
M
C
P
A
I
M
M
M
-
L
N
E
-
P
------------
M
W------
I
RMR
D
-----
Q
---------
V
----------
M
S
M
A
H
N
L
--
P
-
I
E
C
N
L
M
---------------------------
9
Fugue
49.11
21%
-91
- C4 -
1PSY
-
2SS_RICCO
A:
[1-125]
----------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
Q
E
V
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---
R
KD
L
S
S
C
E
R
Y
L
R
----
Q
----
S
--------------
S
---
S
R
R
S
T
GEEVLRMPGDENQQQESQQ
L
----------
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Q
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
D
-
Q
------------
I
-------
Q
---------
Q
---------
G
QLHGEE
S
E
R
V
A
Q
R
A
G
E
I
--
V
-
S
S
C
G
V
R
-
C
--
M
R
Q
T
--
R
T
N
--------------
32
HHSearch
48.34
19%
-139
- C4 -
1B1U
-
IAAT_ELECO
A:
[15-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
---
P
--
L
D
S
C
R
W
Y
V
S
----
T
R
T
CG
V
--------------
G
---
P
-----------------------
R
LA
T
Q
E
M
K
---
A
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C
---
C
R
Q
L
E
A
I
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P
A
Y
C
R
C
E
A
V
R
I
L
-
M
D
G
-
V
------------
V
T
PS----
G
Q
H
E
G
RLLQD
L
PGCP
R
Q
V
Q
R
A
----------
F
A
P
K
L
V
T
--
E
-
V
E
C
N
L
A
T
I
--
H
----------------------
35
HHSearch
47.45
23%
-113
- C4 -
3OB4
-
?
A:
[429-485]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
C
---
C
N
E
L
N
E
F
E
-----------------
N
N
Q
R
C
M
C
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A
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Q
Q
I
-
M
E
N
-
Q
S
DRL--------
Q
-------
G
---------
R
---------
Q
Q
E
Q
Q
F
-----
K
R
E
L
R
N
L
--
P
-
Q
Q
C
G
L
R
A
P
-------------------------
27
HHSearch
46.86
30%
-115
- C4 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
Q
D
---
E
--
L
N
E
C
K
P
A
V
S
----
K
----
E
--------------
N
PTS
P
-----------------------
S
----------
Q
P
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
S
P
W
L
G
S
-
F
--------------------
G
---------
V
---------
D
----------
P
E
L
A
S
A
L
--
P
-
K
Q
C
G
L
A
N
A
--
P
----------------------
15
SP3
46.66
18%
-106
- C4 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
A
G-
S
--
V
V
D
A
L
R
A
V
R
----
N
----
A
--------------
A
---
P
-----------------------
D
----------
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
T
-
V
M
L
E
S
S
-------
G
-------
G
---------
L
---------
S
----------
L
Q
T
A
A
T
Y
----
A
E
T
G
V
D
Y
-----
L
A
--
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M
2
Fugue
46.66
28%
-81
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
D
L
C
G
M
S
Q
D
---
E
--
L
N
E
C
K
P
A
V
S
----
K
----
E
--------------
N
PTS
P
-----------------------
S
----------
Q
P
C
---
C
T
A
L
Q
-------------------
H
A
D
F
A
C
L
C
G
Y
K
N
S
P
-
W
L
G
-
S
------------
F
-------
G
---------
V
---------
D
----------
P
E
L
A
S
A
L
--
P
-
K
Q
C
G
L
A
N
A
----------
P
T
C
------------
User Run . : Multi Template Modeling Result:
(5 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AIGCGAVVSYLNPCLPYVTNKGPLGGCCGGIKGLYGAAKTTPDRQSVCNCLKTLASSYKGVNLGKAAGLPGQCGVSIPYKISPSTDCSKVK
47
94.52
100%
-144
- C- -
M047
-
A:
[1-93]
A
I
G
C
G
A
V
V
S
Y
L
N
P
C
L
P
Y
V
T
N
K
G
P
L
G
G
C
C
G
G
I
K
G
L
Y
G
A
A
K
T
T
P
D
R
Q
S
V
C
N
C
L
K
T
L
A
S
S
Y
K
G
V
N
L
G
K
A
A
G
L
P
G
Q
C
G
V
S
I
P
Y
K
I
S
P
S
T
D
C
S
K
V
K
45
93.95
100%
-147
- C- -
M045
-
A:
[1-137]
A
I
G
C
G
A
V
V
S
Y
L
N
P
C
L
P
Y
V
T
N
K
G
P
L
G
G
C
C
G
G
I
K
G
L
Y
G
A
A
K
T
T
P
D
R
Q
S
V
C
N
C
L
K
T
L
A
S
S
Y
K
G
V
N
L
G
K
A
A
G
L
P
G
Q
C
G
V
S
I
P
Y
K
I
S
P
S
T
D
C
S
K
V
K
48
93.91
100%
-155
- C- -
M048
-
A:
[1-92]
A
I
G
C
G
A
V
V
S
Y
L
N
P
C
L
P
Y
V
T
N
K
G
P
L
G
G
C
C
G
G
I
K
G
L
Y
G
A
A
K
T
T
P
D
R
Q
S
V
C
N
C
L
K
T
L
A
S
S
Y
K
G
V
N
L
G
K
A
A
G
L
P
G
Q
C
G
V
S
I
P
Y
K
I
S
P
S
T
D
C
S
K
V
K
46
93.73
100%
-150
- C- -
M046
-
A:
[1-93]
A
I
G
C
G
A
V
V
S
Y
L
N
P
C
L
P
Y
V
T
N
K
G
P
L
G
G
C
C
G
G
I
K
G
L
Y
G
A
A
K
T
T
P
D
R
Q
S
V
C
N
C
L
K
T
L
A
S
S
Y
K
G
V
N
L
G
K
A
A
G
L
P
G
Q
C
G
V
S
I
P
Y
K
I
S
P
S
T
D
C
S
K
V
K
44
93.29
100%
-154
- C- -
M044
-
A:
[1-137]
A
I
G
C
G
A
V
V
S
Y
L
N
P
C
L
P
Y
V
T
N
K
G
P
L
G
G
C
C
G
G
I
K
G
L
Y
G
A
A
K
T
T
P
D
R
Q
S
V
C
N
C
L
K
T
L
A
S
S
Y
K
G
V
N
L
G
K
A
A
G
L
P
G
Q
C
G
V
S
I
P
Y
K
I
S
P
S
T
D
C
S
K
V
K