@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-07 )
AITCGQVASSLAPCIPYATGNANVMPSGCCGGVRSLNNAARTSADRQAACRCLKSLAGTIKKLNMGTVAGIPGKCGVSVPFRISMSTDCNKVS
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------.........10-.........----20-.----.---.------------------.-----.-----.----..---------------------.---30........40-----------....--....50...--..-..-----------.60------.-------.---------.---------.----------.....70--........80.--------------.......90..--------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------AITCGQVASS--LAPCIPYAT----G--N----A---N------------------V-----M-----P----SG---------------------C---CGGVRSLNNAAR-----------TSAD--RQAACRCLK--SL-AG-----------TI-------K-------K---------L---------N----------MGTVAGI--PGKCGVSVPFR--------------ISMSTDCNKVS--------------------------------------------------------------------------------------------------------------------------------------
31
SP3
96.10
62%
-135
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
--------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
S
A
--
I
A
P
C
I
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Y
A
R
----
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--
Q
----
G
---
S
------------------
G
-----
P
-----
S
----
A
G
---------------------
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
--
R
R
A
A
C
N
C
L
K
--
N
A
-
A
A
-----------
G
V
-------
S
-------
G
---------
L
---------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
--------------
I
S
T
S
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
90.86
57%
-134
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
--------------------------------------------------------------------------------------------------------------------
A
I
T
C
G
Q
V
T
S
N
--
L
A
P
C
L
A
Y
L
R
----
N
--
T
----
G
----------------------------
P
-----
L
----
G
R
---------------------
C
---
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
--
R
Q
I
A
C
T
C
L
K
--
S
A
-
A
G
-----------
A
I
-------
S
-------
G
---------
I
---------
N
----------
L
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
Y
K
--------------
I
S
P
S
T
D
C
S
K
V
Q
--------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
90.16
62%
-131
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
--------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
S
A
--
I
A
P
C
I
S
Y
A
R
----
G
--
Q
----
G
---
S
------------------
G
-----
P
-----
S
----
A
G
---------------------
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
--
R
R
A
A
C
N
C
L
K
--
N
A
-
A
A
-----------
G
V
-------
S
-------
G
---------
L
---------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
--------------
I
S
T
S
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
89.02
57%
-142
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
--------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
Q
V
S
S
S
--
L
A
P
C
I
P
Y
V
R
----
G
--
G
----
G
----------------------
A
-----
V
-----
P
----
P
A
---------------------
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
--
R
Q
A
A
C
N
C
L
K
--
Q
L
-
S
A
-----------
S
V
-------
P
-------
G
---------
V
---------
N
----------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
--------------
I
S
A
S
T
N
C
A
T
V
K
--------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
87.42
46%
-147
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
---------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
D
S
L
--
V
R
P
C
L
S
Y
V
Q
----
G
--
G
--------
P
------------------
G
-----
P
-----
S
----
G
Q
---------------------
C
---
C
D
G
V
K
N
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H
N
Q
A
R
-----------
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D
--
R
Q
S
A
C
N
C
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K
--
G
I
-
A
R
-----------
G
I
-------
H
-------
N
---------
L
---------
N
----------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
--------------
I
S
L
N
I
D
C
S
R
V
---------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
83.19
46%
-139
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
---------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
Q
G
N
--
L
A
Q
C
I
G
F
L
Q
----
K
--
G
----
G
----------------------
V
-----
V
-----
P
----
P
S
---------------------
C
---
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
--
R
R
A
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S
C
L
K
--
A
A
-
A
G
-----------
A
V
-------
R
-------
G
---------
I
---------
N
----------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
--------------
I
S
T
S
T
N
C
N
S
I
N
--------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
54.71
22%
-155
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
----------------------------------------------------------------------------------------------------------------------------
N
P
--
L
P
S
C
R
W
Y
V
T
S
R
TC
G
--
I
----
G
---
P
------------------
R
-----
L
P
W
P
E
L
K
----
R
R
---------------------
C
---
C
R
E
L
A
D
I
-------------------
P
--
A
Y
C
R
C
T
A
L
S
--
I
L
-
M
D
-----------
G
A
-------
I
P
P
G
PDAQ
L
E
G
R
------
L
---------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
52.92
20%
-146
* C2 *
1HSS
-
IAA1_WHEAT
A:
[15-106]
----------------------------------------------------------------------------------------------------------------------------
P
A
--
L
P
A
C
R
P
L
L
R
----
L
--
Q
C
N
--
G
---
S
Q-----------------
V
P
E
A
--
V
-----
L
----
R
D
---------------------
C
---
C
Q
Q
L
A
H
I
S
---------------------
E
W
C
R
C
G
A
L
Y
--
S
M
-
L
D
-----------
S
M
-------
Y
K
E
H-----GAFPRCR
R
E
V
---------
V
----------
K
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
V
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
51.62
17%
-127
- C2 -
1SM7
-
?
A:
[13-101]
----------------------------------------------------------------------------------------------------------------------------
Q
H
--
L
R
A
C
Q
Q
W
I
R
----
Q
--
Q
----
L
AG
S
P
F
S
E
NQWGPQQGP------
S
-----
L
-----
R
----
E
Q
---------------------
C
---
C
N
E
L
Y
Q
E
-------------------
D
--
Q
V
C
V
C
P
T
L
K
--
Q
A
-
A
K
-----------
S
V
-------
R
VQ-----
G
Q--------
H
GPFQST
R
--
I
----------
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
39
SP3
51.33
19%
-130
- C2 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
--------------------------------------------------------------------------------------------------------------MCYPGQ
A
F
Q
----
V
P
A
--
L
P
A
C
R
P
L
L
R
----
L
Q
C
N
----
G
---
S
------------------
Q
-----
V
-----
P
E
A
V
L
R
D
---------------------
C
---
C
Q
Q
L
A
H
I
-------------------
S
--
E
W
C
R
C
G
A
L
Y
--
S
M
-
L
D
-----------
S
M
Y
K
E
HGAF
P
-------
R
---------
C
---------
R
R
E
V
V
------
K
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
----------------
V
D
A
S
G
D
G
A
Y
V
C
K
D
V
A
A
YPDA-----------------------------------------------------------------------------------------------------------------------------
34
SP3
47.78
18%
-107
- C2 -
1QPO
-
NADC_MYCTU
A:
[116-284]
--------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
-
A
G
S
V
V
D
A
--
L
R
A
V
R
N
A
-------------------------------------
A
-----
P
-----
D
----
L
P
---------------------
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
--
T
Q
T
A
V
Q
R
R
D
--
S
R
-
A
P
-----------
T
V
M
L
E
S
S
--
G
-------
G
---------
L
---------
S
----------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
-----------------
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M------------------------------------------------------------------------------------------------------------------------------
7
Fugue
47.21
19%
-95
- C2 -
3T6A
1
BCAR3_HUMAN
A:
[11-318]
TVSSFRPNEFESKFLPPENKPLE
T
A
L
L
K
R
A
K
E
L
F
T
N
ND
P
K
V
I
A
Q
H
V
L
S
M
D
C
R
V
A
RILGVS
E
E
M
R
R
N
M
GVSS
G
L
E
L
I
T
LPHG
H
Q
L
R
L
D
I
I
E
R
H
N
T
M
A
I
G
I
A
V
D
I
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GCTGT
L
E
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R
A
A
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I
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V
A
V
E
--
L
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D
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Y
----
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--
F
----
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---
A
------------------
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-----
M
-----
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----
A
L
---------------------
E
---
M
P
Q
I
T
R
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E
K
T
W
T
-----------
A
L
R
H
QY
T
Q
T
A
I
L
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E
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--
Q
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-
K
P
-----------
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S
-------
K
-------
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---------
L
---------
H
----------
E
G
R
E
S
T
C
--
V
P
P
N
N
V
S
V
P
L
L
--------------
M
P
L
V
T
L
M
E
R
Q
A
VTFEGTDMWEKNDQS
C
E
I
M
L
N
H
L
A
T
A
R
F
M
A
E
A
A
D
S
Y
R
M
N
A
E
R
I
L
AG
F
Q
P
D
E
E
M
N
E
I
C
K
T
E
F
Q
M
R
L
L
WGSKGAQVN
Q
T
E
R
Y
E
K
F
N
Q
I
L
T
A
L
S
R
K
L
EPP-------------------------------------
17
HHSearch
44.33
20%
-86
- C2 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
---------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
Q
D
E
--
L
N
E
C
K
P
A
V
S
----
K
--
E
----
N
---
P
T-----------------
S
-----
P
-----
S
----
Q
P
---------------------
C
---
C
T
A
L
Q
H
A
-------------------
D
--
F
A
C
L
C
G
Y
K
N
--
S
P
W
L
G
-----------
S
--------
F
-------
G
---------
V
---------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
43.02
21%
-69
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-------------------------------------------------------------------------------------------------------------------A
I
D
L
C
G
M
S
Q
D
E
--
L
N
E
C
K
P
A
V
S
----
K
--
E
----
N
---
P
------------------
T
-----
S
-----
P
S---
Q
P
---------------------
C
---
C
T
A
L
Q
H
-------------------
A
D
--
F
A
C
L
C
G
Y
K
N
--
S
P
-
W
L
-----------
G
S
-------
F
-------
G
---------
V
---------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
--------------------
P
T
C
------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
42.53
15%
-114
- C2 -
1B1U
-
IAAT_ELECO
A:
[15-109]
----------------------------------------------------------------------------------------------------------------------------
N
P
--
L
D
S
C
R
W
Y
V
S
----
T
--
R
T
CGV
G
---
P
------------------
R
LA
T
Q
E
M
-----
K
----
A
R
---------------------
C
---
C
R
Q
L
E
A
I
-------------------
P
--
A
Y
C
R
C
E
A
V
R
--
I
L
-
M
D
-----------
G
V
-------
V
T
PS----
G
Q
H
E
G
RLLQD
L
PGCP
R
Q
V
Q
R
A
----------
F
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
41.68
20%
-92
- C2 -
1PSY
-
2SS_RICCO
A:
[25-121]
----------------------------------------------------------------------------------------------------------------------------
K
D
--
L
S
S
C
E
R
Y
L
R
----
Q
--
S
S
S
--
R
R
--
S
T
GEEVLRMPGDENQQQES
Q
-----
Q
-----
L
----
Q
Q
---------------------
C
---
C
N
Q
V
K
Q
V
-------------------
R
--
D
E
C
Q
C
E
A
I
K
--
Y
I
-
A
E
-----------
D
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-------
I
Q
Q
G
QLH-
G
EE
S
E
-----
R
---------
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
--
R
C
M
--------------
R
Q
-----------------------------------------------------------------------------------------------------------------------------------------------
3
Fugue
41.10
23%
-58
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
Q
E
V
Q
R
KD
L
S
S
C
E
R
Y
L
R
----
Q
--
S
----
S
---
S
------------------
R
-----
R
-----
S
----
T
G
EEVLRMPGDENQQQESQQL
Q
Q
C
---
C
N
Q
V
K
Q
V
R
D
E
C
Q
-----------
C
E
A
I
--
K
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I
A
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D
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I
Q
Q
G
Q
L
-
H
G
-----------
E
E
-------
S
-------
E
---------
R
---------
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
R
-
C
M
R
-----------------
Q
T
R
T
N
-----------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
40.91
16%
-114
- C2 -
3OB4
-
?
A:
[428-485]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
----
E
R
---------------------
C
---
C
N
E
L
N
E
F
E
-----------------
N
N
--
Q
R
C
M
C
E
A
L
Q
--
Q
I
-
M
E
-----------
N
Q
S
DRL---
Q
-------
G
---------
R
---------
Q
Q
E
Q
Q
F
-----
K
R
E
L
R
N
L
--
P
Q
Q
C
G
L
R
A
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
40
SP3
37.84
13%
-76
- C2 -
1A0P
-
?
?:
[3-292]
------------------------------------------------------------------------------------------------Q
D
L
A
R
I
E
Q
F
L
D
A
L
W
L
E
KNLA
E
N
T
L
N
A
Y
R
R
D
--
L
S
M
M
V
E
W
L
H
----
H
--
R
----
G
---
L
------------------
T
-----
L
-----
A
----
T
A
---------------------
Q
---
S
D
D
L
Q
A
L
L
A
E
R
L
-----------
S
S
A
R
--
L
L
S
A
V
R
R
L
F
--
Q
Y
-
L
Y
R
E
KFREDDPSA
H
L
-------
K
-------
D
---------
L
---------
S
----------
E
A
Q
V
E
R
L
--
L
Q
A
P
L
I
D
Q
P
L
E
L
R
D
K
A
M
L
E
V
L
Y
A
TG
L
R
V
S
-
E
L
V
G
L
T
MSDISLRQG
V
V
R
V
I
G
KGNK
E
R
L
V
P
LG
E
E
A
V
Y
W
L
E
T
Y
L
E
HG
R
P
W
L
L
N
GVSIDVLFPSQRAQQMT
R
Q
T
F
W
H
R
I
K
H
Y
A
V
L
A
GIDSEKLS
P
H
V
L
R
H
A
F
A
T
H
L
L
N
HGADLRVVQMLLSDLS
T
T
Q
I
Y
T
H
V
A
T
E
R
L
R
Q
L
H
Q
9
Fugue
36.93
25%
-83
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------------------------------------------------------------------------------------------------------------
A
G
C
--
N
A
G
Q
--
L
T
V
C
T
G
A
I
A
----
G
--
G
----
A
---
R
------------------
P
-----------
T
----
A
A
---------------------
C
---
C
S
S
L
R
------------------------
A
Q
Q
G
C
F
C
Q
F
--
A
K
-
D
P
-----------
R
Y
-------
G
-------
R
Y--------
V
---------
N
----------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
---------------------
T
C
H
-----------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90..
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AITCGQVASSLAPCIPYATGNANVMPSGCCGGVRSLNNAARTSADRQAACRCLKSLAGTIKKLNMGTVAGIPGKCGVSVPFRISMSTDCNKVS
41
98.45
100%
-147
- C- -
M041
-
A:
[1-93]
A
I
T
C
G
Q
V
A
S
S
L
A
P
C
I
P
Y
A
T
G
N
A
N
V
M
P
S
G
C
C
G
G
V
R
S
L
N
N
A
A
R
T
S
A
D
R
Q
A
A
C
R
C
L
K
S
L
A
G
T
I
K
K
L
N
M
G
T
V
A
G
I
P
G
K
C
G
V
S
V
P
F
R
I
S
M
S
T
D
C
N
K
V
S
45
95.11
100%
-148
- C- -
M045
-
A:
[1-93]
A
I
T
C
G
Q
V
A
S
S
L
A
P
C
I
P
Y
A
T
G
N
A
N
V
M
P
S
G
C
C
G
G
V
R
S
L
N
N
A
A
R
T
S
A
D
R
Q
A
A
C
R
C
L
K
S
L
A
G
T
I
K
K
L
N
M
G
T
V
A
G
I
P
G
K
C
G
V
S
V
P
F
R
I
S
M
S
T
D
C
N
K
V
S
47
93.78
100%
-142
- C- -
M047
-
A:
[1-93]
A
I
T
C
G
Q
V
A
S
S
L
A
P
C
I
P
Y
A
T
G
N
A
N
V
M
P
S
G
C
C
G
G
V
R
S
L
N
N
A
A
R
T
S
A
D
R
Q
A
A
C
R
C
L
K
S
L
A
G
T
I
K
K
L
N
M
G
T
V
A
G
I
P
G
K
C
G
V
S
V
P
F
R
I
S
M
S
T
D
C
N
K
V
S