@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-07 )
AITCGQVASALSPCISYLQKGGAVPPACCSGIKSLNSSAKTTADRQAACKCLKNFSSTVSGINLSLASGLPGKCGVSVPYKISPSTDCTKVT
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......----..--.10--.........20------------.----.----------------------.-------------------.------------.----.--...30........40---........50-----..--..-....-------60------.---------.-----------------.----------......70-.-...---....----.80..--......90.---------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AITCGQ----VA--SA---LSPCISYLQK-------------G----G----------------------A-------------------V------------P----P--ACCSGIKSLNSSAKT---TADRQAACKC-----LK--NF-SSTV-------S-------G---------I-----------------N----------LSLASGL--P-GKC---GVSV----PYKIS--PSTDCTKVT---------------------
11
HHSearch
96.17
63%
-127
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
Q
----
V
S
--
S
S
---
L
A
P
C
I
P
Y
V
R
G
-------------
G
----
G
----------------------
A
-------------------
V
------------
P
----
P
--
A
C
C
N
G
I
R
N
V
N
N
L
A
R
T
---
T
P
D
R
Q
A
A
C
N
C
-----
L
K
--
Q
L
-
S
A
S
V
-------
P
-------
G
---------
V
-----------------
N
----------
P
N
N
A
A
A
L
--
P
-
G
K
C
---
G
V
S
I
----
P
Y
K
I
S
--
A
S
T
N
C
A
T
V
K
---------------------
15
HHSearch
92.82
56%
-131
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
----
V
Q
--
G
N
---
L
A
Q
C
I
G
F
L
Q
K
-------------
G
----
G
----------------------
V
-------------------
V
------------
P
----
P
--
S
C
C
T
G
V
K
N
I
L
N
S
S
R
T
---
T
A
D
R
R
A
V
C
S
C
-----
L
K
--
A
A
-
A
G
A
V
-------
R
-------
G
---------
I
-----------------
N
----------
P
N
N
A
E
A
L
--
P
-
G
K
C
---
G
V
N
I
----
P
Y
K
I
S
--
T
S
T
N
C
N
S
I
N
---------------------
29
SP3
92.09
59%
-126
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
----
V
A
--
S
A
---
I
A
P
C
I
S
Y
A
R
G
-------------
Q
----
G
----------------------
S
G------------------
P
------------
S
----
A
--
G
C
C
S
G
V
R
S
L
N
N
A
A
R
T
---
T
A
D
R
R
A
A
C
N
C
-----
L
K
--
N
A
-
A
A
G
V
-------
S
-------
G
---------
L
-----------------
N
----------
A
G
N
A
A
S
I
--
P
-
S
K
C
---
G
V
S
I
----
P
Y
T
I
S
--
T
S
T
D
C
S
R
V
N
---------------------
13
HHSearch
89.68
60%
-122
- C3 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
C
G
Q
----
V
T
--
S
N
---
L
A
P
C
L
A
Y
L
R
N
-------------
T
----
G
------------------------------------------
P
------------
L
----
G
--
R
C
C
G
G
V
K
A
L
V
N
S
A
R
T
---
T
E
D
R
Q
I
A
C
T
C
-----
L
K
--
S
A
-
A
G
A
I
-------
S
-------
G
---------
I
-----------------
N
----------
L
G
K
A
A
G
L
--
P
-
S
T
C
---
G
V
N
I
----
P
Y
K
I
S
--
P
S
T
D
C
S
K
V
Q
---------------------
16
HHSearch
87.20
43%
-132
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
----
V
D
--
S
L
---
V
R
P
C
L
S
Y
V
Q
G
-------------
G
----
P
----------------------
G
-------------------
P
------------
S
----
G
--
Q
C
C
D
G
V
K
N
L
H
N
Q
A
R
S
---
Q
S
D
R
Q
S
A
C
N
C
-----
L
K
--
G
I
-
A
R
G
I
-------
H
-------
N
---------
L
-----------------
N
----------
E
D
N
A
R
S
I
--
P
-
P
K
C
---
G
V
N
L
----
P
Y
T
I
S
--
L
N
I
D
C
S
R
V
----------------------
12
HHSearch
85.24
60%
-114
- C3 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
----
V
A
--
S
A
---
I
A
P
C
I
S
Y
A
R
G
-------------
Q
----
G
----------------------
S
G------------------
P
------------
S
----
A
--
G
C
C
S
G
V
R
S
L
N
N
A
A
R
T
---
T
A
D
R
R
A
A
C
N
C
-----
L
K
--
N
A
-
A
A
G
V
-------
S
-------
G
---------
L
-----------------
N
----------
A
G
N
A
A
S
I
--
P
-
S
K
C
---
G
V
S
I
----
P
Y
T
I
S
--
T
S
T
D
C
S
R
V
N
---------------------
24
HHSearch
60.43
22%
-131
- C3 -
1SM7
-
?
A:
[13-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
H
---
L
R
A
C
Q
Q
W
I
R
Q
-------------
Q
LAG-
S
P
F
S
E
NQWGPQQGP---------
S
-------------------
L
------------
R
----
E
--
Q
C
C
N
E
L
Y
Q
E
-----------
D
Q
V
C
V
C
P
T
-----
L
K
--
Q
A
-
A
K
S
V
-------
R
VQ-----
G
Q--------
H
GPFQST
R
----------
I
----------
Y
Q
I
A
K
N
L
--
P
-
N
V
C
---
N
M
K
Q
----
I
------------------------------------
32
SP3
59.90
18%
-148
- C3 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MCYPGQ
A
F
Q
--------
V
--
P
A
---
L
P
A
C
R
P
L
L
R
L
Q
C
N
----------
G
----
S
----------------------
Q
-------------------
V
------------
P
E
A
V
L
R
--
D
C
C
Q
Q
L
A
H
I
-----------
S
E
W
C
R
C
G
A
-----
L
Y
--
S
M
-
L
D
S
M
Y
K
E
HGAF
P
-------
R
---------
C
-----------------
R
R
E
V
V
------
K
L
T
A
A
S
I
--
T
-
A
V
C
---
R
L
P
I
----
V
--
V
D
--
A
S
G
D
G
A
Y
V
C
K
D
V
A
A
YPDA------------
23
HHSearch
55.87
17%
-151
- C3 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
---
L
P
S
C
R
W
Y
V
T
S
R
TCG---------
I
----
G
----------------------
P
-------------------
R
LP
W
P
E
L
------
K
----
R
--
R
C
C
R
E
L
A
D
I
-----------
P
A
Y
C
R
C
T
A
-----
L
S
--
I
L
-
M
D
G
A
-------
I
P
P
G
PDAQ
L
E
G
R
------
L
-----------------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
-
A
E
C
---
N
L
A
T
----
I
------------------------------------
26
HHSearch
52.90
25%
-92
- C3 -
1PSY
-
2SS_RICCO
A:
[25-117]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
---
L
S
S
C
E
R
Y
L
R
Q
-------------
S
S
S
--
R
R
---------------------
S
T
GEEVLRMPGDENQQQESQ
Q
------------
L
----
Q
--
Q
C
C
N
Q
V
K
Q
V
-----------
R
D
E
C
Q
C
E
A
-----
I
K
--
Y
I
-
A
E
D
Q
-------
I
Q
Q
-----
G
Q--------
L
HGEE
S
E
R
----------
V
----------
A
Q
R
A
G
E
I
--
V
-
S
S
C
---
G
V
R
------------------------------------------
6
Fugue
52.82
20%
-47
- C3 -
1PSY
-
2SS_RICCO
A:
[1-125]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
Q
----
E
V
QR
K
D
---
L
S
S
C
E
R
Y
L
R
Q
-------------
S
----
S
S
R
R
S
T
GEEVLRMPGDENQQQES
Q
-------------------
Q
------------
L
----
Q
--
Q
C
C
N
Q
V
K
Q
V
R
D
E
C
Q
C
---
E
A
I
K
Y
I
A
E
D
Q
-----
I
Q
Q
G
Q
L
-
H
G
E
E
-------
S
-------
E
---------
R
-----------------
V
----------
A
Q
R
A
G
E
I
--
V
-
S
S
C
---
G
V
R
C
----
M
R
Q
T
R
--
T
N
----------------------------
22
HHSearch
50.11
16%
-123
- C3 -
1B1U
-
IAAT_ELECO
A:
[15-109]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
---
L
D
S
C
R
W
Y
V
S
T
-------------
R
T
CGV
G
----------------------
P
RLA
T
Q
E
-------------
M
------------
K
----
A
--
R
C
C
R
Q
L
E
A
I
-----------
P
A
Y
C
R
C
E
A
-----
V
R
--
I
L
-
M
D
G
V
-------
V
T
PS----
G
Q
H
E
G
RLLQD
L
PGCP
R
Q
V
Q
R
--------
A
----------
F
A
P
K
L
V
T
--
E
-
V
E
C
---
N
L
A
T
----
I
H
-----------------------------------
17
HHSearch
48.79
24%
-102
- C3 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
----
S
Q
--
D
E
---
L
N
E
C
K
P
A
V
S
K
-------------
E
----
N
PT--------------------
S
-------------------
P
------------
S
----
Q
--
P
C
C
T
A
L
Q
H
A
-----------
D
F
A
C
L
C
G
Y
-----
K
N
--
S
P
W
L
G
S
F
---------------
G
---------
V
-----------------
D
----------
P
E
L
A
S
A
L
--
P
-
K
Q
C
---
G
L
A
N
----
A
P
-----------------------------------
7
Fugue
47.90
23%
-61
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
----
Q
M
--
E
E
A
EM
L
N
H
C
G
M
Y
L
M
K
NLGERSQVSPR
M
R
E
----
E
----------------------
D
-------------------
H
------------
K
----
Q
--
L
C
C
M
Q
L
K
N
L
D
E
K
C
M
C
---
P
A
I
M
M
M
L
--------
N
E
--
P
M
-
W
I
R
M
-------
R
-------
D
---------
Q
-----------------
V
----------
M
S
M
A
H
N
L
--
P
-
I
E
C
---
N
L
M
-------------
S
Q
P
C
Q
M
-----------------------
28
HHSearch
47.64
17%
-93
- C3 -
1W2Q
-
CONG_ARAHY
A:
[22-114]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
--
V
N
---
L
K
P
C
E
Q
H
I
M
Q
-------------
R
I
MG-
E
QEQ-------------------
Y
-------------------
D
SYDIRSTR
S
S
D
Q
Q
----
Q
--
R
C
C
D
E
L
N
E
M
E
--------
N
-
T
Q
G
C
M
C
E
A
-----
L
Q
--
Q
I
-
M
E
N
Q
-------
C
DRLQ---
D
---------
R
-----------------
Q
MV
Q
Q
F
-----
K
R
E
L
M
S
L
--
P
-
Q
Q
C
---
N
F
R
A
----
P
------------------------------------
2
Fugue
45.18
27%
-84
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
D
L
C
G
M
----
S
Q
--
D
E
---
L
N
E
C
K
P
A
V
S
K
-------------
E
----
N
----------------------
P
-------------------
T
------------
S
----
P
S
Q
P
C
C
T
A
L
Q
H
-----------
A
D
F
A
C
L
C
G
Y
-----
K
N
--
S
P
-
W
L
G
S
-------
F
-------
G
---------
V
-----------------
D
----------
P
E
L
A
S
A
L
--
P
-
K
Q
C
---
G
L
A
N
----
A
--------
P
T
C
-------------------------
38
SP3
44.45
21%
-71
- C2 -
1BS0
-
BIOF_ECOLI
A:
[2-384]
S
W
Q
E
K
I
N
A
A
L
D
A
RRAADALR
R
R
Y
P
V
AQGAGR
W
L
V
A
DDRQYLNFSSNDYLGLSHH
P
Q
I
I
R
A
W
Q
Q
G
A
E
Q
FGIGSGGSGHVSGYS
V
V
H
Q
A
L
E
E
E
L
A
E
W
L
GYS
R
A
L
L
F
IS
G
F
A
A
N
Q
A
V
I
A
A
M
MAKE
D
R
I
A
A
D
RLSH
A
S
L
L
E
A
A
S
L
SP
S
Q
L
R
R
F
AHND
V
T
H
L
A
R
L
L
A
SPCP
G
Q
Q
M
V
V
T
E
GVFSMDGDSAP
L
A
E
I
Q
Q
V
T
Q
Q
H
N
G
W
L
M
V
D
DAHGTGVIGEQGRG
S
C
W
L
Q
KVKPE
L
L
V
V
T
FGKGFG
V
S
G
A
A
V
L
C
S
S
T
----
V
A
--
D
Y
---
L
L
Q
F
A
R
H
L
I
Y
-------------
S
----
T
----------------------
S
-------------------
M
------------
P
----
P
--
A
Q
A
Q
A
L
R
A
S
L
A
V
I
R
S
D
E
G
D
A
R
R
E
K
L
A
A
L
-----
I
T
--
R
F
-
R
A
G
V
-------
Q
-------
D
---------
L
P
F
T
L
A
DSCSA
I
Q
P
L
I
VG
D
----------
N
S
R
A
L
Q
L
--
A
-
E
K
L
R
Q
Q
G
C
W
V
T
A
I
R
P
P
T
V
P
--
A
G
T
A
R
L
-
L
T
LTAAHE
M
Q
D
I
D
R
L
L
E
V
L
H
G
N
G
3
Fugue
43.99
18%
-63
- C3 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
C
Y
P
GQAF
Q
V
--
P
A
---
L
P
A
C
R
P
L
L
R
L
Q
C
N
GSQVP----------
E
----------------------
A
-------------------
V
------------
L
----
R
--
D
C
C
Q
Q
L
A
H
I
S
E
W
C
R
C
---
G
A
L
Y
S
M
L
D
S
-
M
Y
K
E
H-
G
--
A
F
-
P
R
C
R
-------
R
-------
E
---------
V
-----------------
V
----------
K
L
T
A
A
S
I
--
T
A-
V
C
---
R
L
P
I
----
V
V
D
A
S
GD
G
A
Y
V
C
K
D
V
A
A
YPDA----------------
31
SP3
42.67
19%
-89
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
------
N
A
--
G
Q
---
L
T
V
C
T
G
A
I
A
G
-------------
G
----
A
----------------------
R
-------------------
P
------------
T
----
A
--
A
C
C
S
S
L
R
A
--------------
Q
Q
G
C
F
C
Q
----
F
A
--
K
D
-
P
R
Y
G
-------
R
-------
Y
---------
V
-----------------
N
----------
S
P
N
A
R
K
A
--
V
-
S
S
C
---
G
I
A
L
----
P
---------
T
C
H
------------------------
19
HHSearch
42.40
30%
-82
- C3 -
1N89
1
NLT2G_WHEAT
A:
[4-65]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
S
Q
---
L
A
V
C
A
S
A
I
L
S
-------------
G
----
A
----------------------
K
-------------------
P
------------
S
----
G
--
E
C
C
G
N
L
R
A
--------------
Q
Q
G
C
F
C
-----
Q
Y
--
A
K
-
D
P
T
Y
G
------
Q
-------
Y
---------
I
-----------------
R
----------
S
P
H
A
R
D
T
--
L
-
T
S
C
---
G
L
A
V
----
P
------------------------------------
User Run . : Multi Template Modeling Result:
(5 SA)
.........10........20........30........40........50........60........70........80........90.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AITCGQVASALSPCISYLQKGGAVPPACCSGIKSLNSSAKTTADRQAACKCLKNFSSTVSGINLSLASGLPGKCGVSVPYKISPSTDCTKVT
45
96.88
100%
-139
- C- -
M045
-
A:
[1-93]
A
I
T
C
G
Q
V
A
S
A
L
S
P
C
I
S
Y
L
Q
K
G
G
A
V
P
P
A
C
C
S
G
I
K
S
L
N
S
S
A
K
T
T
A
D
R
Q
A
A
C
K
C
L
K
N
F
S
S
T
V
S
G
I
N
L
S
L
A
S
G
L
P
G
K
C
G
V
S
V
P
Y
K
I
S
P
S
T
D
C
T
K
V
T
39
95.75
100%
-136
- C- -
M039
-
A:
[1-93]
A
I
T
C
G
Q
V
A
S
A
L
S
P
C
I
S
Y
L
Q
K
G
G
A
V
P
P
A
C
C
S
G
I
K
S
L
N
S
S
A
K
T
T
A
D
R
Q
A
A
C
K
C
L
K
N
F
S
S
T
V
S
G
I
N
L
S
L
A
S
G
L
P
G
K
C
G
V
S
V
P
Y
K
I
S
P
S
T
D
C
T
K
V
T
43
94.87
100%
-137
- C- -
M043
-
A:
[1-93]
A
I
T
C
G
Q
V
A
S
A
L
S
P
C
I
S
Y
L
Q
K
G
G
A
V
P
P
A
C
C
S
G
I
K
S
L
N
S
S
A
K
T
T
A
D
R
Q
A
A
C
K
C
L
K
N
F
S
S
T
V
S
G
I
N
L
S
L
A
S
G
L
P
G
K
C
G
V
S
V
P
Y
K
I
S
P
S
T
D
C
T
K
V
T
40
93.33
100%
-141
- C- -
M040
-
A:
[1-93]
A
I
T
C
G
Q
V
A
S
A
L
S
P
C
I
S
Y
L
Q
K
G
G
A
V
P
P
A
C
C
S
G
I
K
S
L
N
S
S
A
K
T
T
A
D
R
Q
A
A
C
K
C
L
K
N
F
S
S
T
V
S
G
I
N
L
S
L
A
S
G
L
P
G
K
C
G
V
S
V
P
Y
K
I
S
P
S
T
D
C
T
K
V
T
44
92.65
100%
-139
- C- -
M044
-
A:
[1-93]
A
I
T
C
G
Q
V
A
S
A
L
S
P
C
I
S
Y
L
Q
K
G
G
A
V
P
P
A
C
C
S
G
I
K
S
L
N
S
S
A
K
T
T
A
D
R
Q
A
A
C
K
C
L
K
N
F
S
S
T
V
S
G
I
N
L
S
L
A
S
G
L
P
G
K
C
G
V
S
V
P
Y
K
I
S
P
S
T
D
C
T
K
V
T