@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 439_tII_HORVU: (2014-05-08 )
ADAGAGAACEPAQLAVCASAILGGTKPSGECCGNLRAQQGCLCQYVKDPNYGHYVSSPHARDTLNLCGIPVPHC
Atome Classification :
(20 SA)
---------.........-----10-..--.......20--.-------------..--.--.-.-----.-----------.30.....-----------.-----------.-----.-40.......----.------.-50-----------..-----..--------...--..60.........70..---------..--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------ADAGAGAAC-----
E
--
P
A
--
Q
L
A
V
C
A
S
A
I
--L-------------GG--T--K-P-----
S
-----------
G
E
C
C
GNLR-----------A-----------Q-----Q-G-
C
L
C
Q
YVK----D------P-N------------YG-----HY--------VSS--PHA-RD
T
L
N
LCGIP-VP---------HC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
93.04
78%
-125
- C4 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
----------------
A
C
-----
Q
--
A
S
--
Q
L
A
V
C
A
S
A
I
--
L
-------------
S
G
--
A
--
K
-
P
-----
S
-----------
G
E
C
C
G
N
L
R
-----------
A
-----------
Q
-----
Q
-
G
-
C
F
C
Q
Y
A
K
----
D
------
P
-
T
------------
Y
G
-----
Q
Y
--------
I
R
S
--
P
H
A
-
R
D
T
L
T
S
C
G
L
A
-
V
P
---------
H
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
79.69
56%
-130
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
---------------
A
G
C
-----
N
--
A
G
--
Q
L
T
V
C
T
G
A
I
--
A
-------------
G
G
--
A
--
R
-
P
-----
T
-----------
A
A
C
C
S
S
L
R
-----------
A
-----------
Q
-----
Q
-
G
-
C
F
C
Q
F
A
K
----
D
------
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
--
P
N
A
-
R
K
A
V
S
S
C
G
I
A
-
L
P
---------
T
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
79.58
55%
-130
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------
A
G
C
-----
N
--
A
G
--
Q
L
T
V
C
T
G
A
I
--
A
-------------
G
G
--
A
--
R
-
P
-----
T
-----------
A
A
C
C
S
S
L
R
-----------
A
-----------
Q
-----
Q
-
G
-
C
F
C
Q
F
A
K
----
D
------
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
--
P
N
A
-
R
K
A
V
S
S
C
G
I
A
-
L
P
---------
T
C
H-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
SP3
78.47
51%
-130
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------
A
G
C
-----
N
--
A
G
--
Q
L
T
V
C
T
G
A
I
--
A
-------------
G
G
--
A
--
R
-
P
-----
T
-----------
A
A
C
C
S
S
L
R
-----------
A
-----------
Q
-----
Q
-
G
-
C
F
C
Q
F
A
K
----
D
------
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
--
P
N
A
-
R
K
A
V
S
S
C
G
I
A
-
L
P
---------
T
C
H-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
70.58
30%
-110
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------
A
I
D
L
C
G
M
-----
S
--
Q
D
--
E
L
N
E
C
K
P
A
V
--
S
-------------
K
E
NP
T
--
S
-
P
-----
S
-----------
Q
P
C
C
T
A
L
Q
H
----------
A
-----------
D
-----
F
-
A
-
C
L
C
G
Y
K
N
----
S
------
P
-
W
------------
L
G
-----
S
F
G-------
V
D
P
--
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
-
N
A
P--------
T
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
69.40
30%
-115
- C4 -
2RKN
2
DIRL1_ARATH
A:
[4-77]
----------------
L
C
-----
G
MS
Q
D
--
E
L
N
E
C
K
P
A
V
--
S
-------------
K
E
--
N
PT
S
-
P
-----
S
-----------
Q
P
C
C
T
A
L
Q
-----------
H
-----------
A
-----
D
F
A
-
C
L
C
G
Y
K
N
----
S
------
P
-
W
------------
L
G
-----
S
F
G-------
V
D
P
--
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
-
N
A
P--------
T
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
SP3
68.53
18%
-143
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
--
A
E
--
M
L
N
H
C
G
M
Y
L
--
M
KN-----------
L
G
--
E
--
R
-
S
-----
Q
VSPR
M
R
E
E
D
H
K
Q
L
C
C
M
Q
L
K
-----------
N
L----------
D
-----
E
-
K
-
C
M
C
P
A
I
M
M
M
L
N
E
------
P
-
M
------------
W
I
-----
R
M
--------
R
D
Q
V
M
S
M
A
-
H
N
L
P
I
E
C
N
L
M
-
S
Q
---------
P
C
QM------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
65.57
31%
-110
- C4 -
1T12
-
NLTP1_TOBAC
A:
[2-78]
---------------
I
T
C
-----
G
--
Q
V
T
S
N
L
A
P
C
L
A
Y
L
--
R
-------------
N
T
--
G
----
P
-----
L
-----------
G
R
C
C
G
G
V
K
-----------
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
-
C
T
C
--
L
K
----
S
------
A
-
A
-------------
G
-----
A
I
SG------
I
N
L
--
G
K
A
-
A
G
L
P
S
T
C
G
V
N
-
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
64.71
29%
-94
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
---------------
I
T
C
-----
G
--
Q
V
S
S
S
L
A
P
C
I
P
Y
V
--
R
-------------
G
G
--
G
--
A
-
V
-----
P
-----------
P
A
C
C
N
G
I
R
-----------
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
-
C
N
C
--
L
K
----
Q
------
L
-
S
-------------
A
-----
S
V
PG------
V
N
P
--
N
N
A
-
A
A
L
P
G
K
C
G
V
S
-
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
64.36
20%
-84
* C4 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
--------------
A
I
S
C
-----
G
Q
V
A
S
--
A
I
A
P
C
I
S
Y
A
--
R
-------------
G
Q
--
G
--
S
G
P
-----
S
-----------
A
G
C
C
S
G
V
R
-----------
S
-----------
L
-----
N
-
N
-
A
----
A
R
----
T
------
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
-----
G
V
SG------
L
N
A
--
G
N
A
-
A
S
I
P
S
K
C
G
V
S
-
I
P
YTISTST--
D
C
SRVN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
62.71
27%
-96
- C4 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
---------------
I
S
C
-----
G
--
Q
V
A
S
A
I
A
P
C
I
S
Y
A
--
R
-------------
G
Q
--
G
--
S
G
P
-----
S
-----------
A
G
C
C
S
G
V
R
-----------
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
-
C
N
C
--
L
K
----
N
------
A
-
A
-------------
A
-----
G
V
SG------
L
N
A
--
G
N
A
-
A
S
I
P
S
K
C
G
V
S
-
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
57.49
27%
-114
- C4 -
1HYP
-
HPSE_SOYBN
A:
[6-73]
---------------
P
S
C
-----
P
------
D
L
S
I
C
L
N
I
L
GG
S
-------------
L
G
--
T
----------
V
-----------
D
D
C
C
A
L
I
G
-----------
G
-----------
L
G
D
I
E
A
I
-
V
-
C
L
C
I
Q
L
R
----
A
---------------------
L
G
-----
I
---------
L
N
L
--
N
R
N
L
Q
L
I
L
N
S
C
G
R
S
-
Y
P
---------
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
57.02
29%
-75
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
---------------
I
D
C
-----
G
H
V
D
S
--
L
V
R
P
C
L
S
Y
V
--
Q
-------------
G
G
P----
G
-
P
-----
S
-----------
G
Q
C
C
D
G
V
K
N
L
H
N
Q
ARS
Q
S
D
R
-----------
Q
-----
S
-
A
-
C
N
C
L
K
G
I
----
A
------
R
-
G
------------
I
H
-----
N
L
--------
N
-
E
--
D
N
A
-
R
S
I
P
P
K
C
G
---
V
N
LP
Y
T
I
S
LNI
D
C
SRV-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
55.33
14%
-106
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
-----
E
--
A
E
--
M
L
N
H
C
G
M
Y
L
--
M
KNLGERSQVSPR
M
R
E
--
E
--
D
-
H
-----
K
-----------
Q
L
C
C
M
Q
L
K
-----------
N
L----------
D
-----
E
-
K
-
C
M
C
P
A
I
M
----
M
M
L
N
EPM
W
-
I
------------
R
M
-----
R
D
--------
Q
V
M
--
S
M
A
-
H
N
L
P
I
E
C
N
L
M
-
S
Q
---------
P
C
QM------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
55.02
20%
-84
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
--------------------------
Q
G
--
N
L
A
Q
C
I
G
F
L
--
Q
-------------
K
G
--
G
--
V
-
V
-----
P
-----------
P
S
C
C
T
G
V
K
-----------
N
I
L
NSSRTTADR
R
-----
A
-
V
-
C
S
C
L
K
A
A
----
A
------
G
-
A
------------
V
R
------
G
--------
I
N
P
--
N
N
A
-
E
A
L
P
G
K
C
G
V
N
-
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
54.84
28%
-57
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
--------------------------
D
S
--
L
V
R
P
C
L
S
Y
V
--
Q
-------------
G
G
--
P
--
G
-
P
-----
S
-----------
G
Q
C
C
D
G
V
K
-----------
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
-
C
N
C
L
K
G
I
----
A
------
R
-
G
------------
I
H
------
N
--------
L
N
E
--
D
N
A
-
R
S
I
P
P
K
C
G
V
N
-
L
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
54.46
17%
-94
- C4 -
1U78
-
TC3A_CAEEL
A:
[2-104]
------------
P
R
G
S
A
L
-----
S
--
D
T
--
E
R
A
Q
-
L
D
V
M
--
K
-------------
L
L
--
N
--
V
-
S
-----
L
-----------
H
E
M
S
R
K
I
S
-----------
R
-----------
S
-----
R
-
H
-
C
I
R
V
Y
L
K
----
D
------
P
V
S
------------
Y
G
-----
T
S
KRAPRRKA
L
S
V
--
R
D
E
-
R
N
V
I
R
A
A
S
N
S
-
C
K
---------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
SP3
51.72
16%
-78
- C4 -
1F9M
-
TRXF_SPIOL
A:
[10-121]
-------ME
A
I
V
G
K
V
T
E
V
-----
N
--
K
D
--
T
F
---
W
P
I
V
--
K
A
------------
A
G
--
D
--
K
-
P
V
V
L
D
M
F
-----------
T
Q
W
C
G
P
C
K
-----------
A
-----------
M
-----
A
-
P
-
K
Y
E
K
L
A
E
----
E
Y
-----
L
-
D
V
I
----------
F
L
-----
K
L
--------
D
C
N
--
Q
E
N
-
K
T
L
A
K
E
L
G
I
R
V
V
P
---------
T
F
K
I
L
K
ENSVV
G
E
V
T
G
AK
Y
D
K
L
L
E
A
I
Q
A
A
R
S---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
50.61
18%
-70
- C4 -
1KNG
-
CYCY_BRADU
A:
[50-193]
--RPAPQ
T
A
L
P
P
L
E
G
L
Q
A
-----
D
--
N
V
--
Q
V
P
G
L
D
P
A
A
--
F
-------------
K
G
-----
K
-
V
S
L
V
N
V
W
-----------
A
S
W
C
V
P
C
H
-----------
D
-----------
E
-----
A
-
P
-
L
L
T
E
L
G
K
----
D
------
K
-
R
------------
F
Q
L
V
G
I
N
Y
K
--------
D
A
A
--
D
N
A
-
R
R
F
L
G
R
Y
G
N
P
-
F
G
---------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
Fugue
48.89
26%
-57
- C1 -
4DTH
2
?
A:
[12-367]
ATPDFPTHF
P
K
S
S
I
G
I
E
N
-----
E
--
L
A
--
G
L
V
V
A
M
P
-------------------------
A
-
N
-----
S
-----------
A
Q
K
F
G
Y
V
K
-----------
S
-----------
A
-----
Q
-
G
D
A
L
F
M
L
T
K
----
D
------
M
-
N
------------
Q
G
-----
S
Y
--------
Q
R
P
--
P
S
L
-
Q
D
G
K
N
Y
Q
N
W
Q
-
T
H
---------
T
V
E
L
V
S
YPCEMDD
K
A
A
V
E
T
R
K
Q
A
M
L
W
L
A
T
H
F
T
T
H
I
D
QSNHQPLAPIQSEDGR
F
V
I
E
I
TNAK
H
V
I
A
A
GNGISAESQGQT
I
T
M
T
PSG
Q
Q
A
T
V
G
V
AAKGFGTSAT
P
E
L
R
L
L
E
S
APWYQ
K
S
L
K
S
Q
F
A
S
L
T
S
AENLDD
K
E
L
A
A
N
V
F
A
Y
L
T
S
I
Y
L
K
T
A
E
L
A
K
K
F
GIYINEWDPMSEQITPNANGLTD
P
K
V
K
N
A
W
E
ILPRTK
P
S
K
I
V
E
I
L
S
K
S
D
A
K
A
V
M
K
H
I
K
P
Q
L
Q
S
R
YS
E
S
L
S
K
N
V
F
Q
Y
F
Q
D
GGEVAGHGINN
A
T
V
G
DKHSP
E
L
A
I
L
F
E
FRTVPNELQSY
L
P
K
T
E
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70...
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ADAGAGAAC
E
P
A
Q
L
A
V
C
A
S
A
I
LGGTKP
S
G
E
C
C
GNLRAQQG
C
L
C
Q
YVKDPNYGHYVSSPHARD
T
L
N
LCGIPVPHC
42
96.96
100%
-126
- C- -
M042
-
A:
[1-111]
A
D
A
G
A
G
A
A
C
E
P
A
Q
L
A
V
C
A
S
A
I
L
G
G
T
K
P
S
G
E
C
C
G
N
L
R
A
Q
Q
G
C
L
C
Q
Y
V
K
D
P
N
Y
G
H
Y
V
S
S
P
H
A
R
D
T
L
N
L
C
G
I
P
V
P
H
C
40
36.74
100%
-2
- C- -
M040
-
A:
[3-92]
A
D
A
G
A
G
A
A
C
E
P
A
Q
L
A
V
C
A
S
A
I
L
G
G
T
K
P
S
G
E
C
C
G
N
L
R
A
Q
Q
G
C
L
C
Q
Y
V
K
D
P
N
Y
G
H
Y
V
S
S
P
H
A
R
D
T
L
N
L
C
G
I
P
V
P
H
C