@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 455_tII_MAIZE: (2014-05-08 )
ATTCAPTQLTPCAPAIVGNAAPTAACCARLKAHPATCFCQYKRNPSMQRYVNSPNGKKVFAACKVSLPRC
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....--.--..--..---10...-------..--.-------------..--20-.-..---......30---..-----------.------------...------------...40...------.....50-......---...-60.-......-------.70------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTC--A--PT--QL---TPCA
P
-------
A
I--V-------------GN--A--A-
P
T
---
A
A
C
C
A
R
L----KA-----------H------------P
A
T
------------
C
F
C
Q
YKRN------P
S
M
Q
R
Y
--VNSPNG---
K
K
V
-
F
A
A
-
C
KVSLP-------RC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
SP3
88.97
48%
-128
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
--
N
--
A
G
--
Q
L
---
T
V
C
T
G
-------
A
I
--
A
-------------
G
G
--
A
--
R
-
P
T
---
A
A
C
C
S
S
L
----
R
A
-----------
Q
------------
Q
-
G
------------
C
F
C
Q
F
A
K
D
------
P
R
Y
G
R
Y
--
V
N
S
P
N
A
---
R
K
A
-
V
S
S
-
C
G
I
A
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
88.59
50%
-128
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
--
N
--
A
G
--
Q
L
---
T
V
C
T
G
-------
A
I
--
A
-------------
G
G
--
A
--
R
-
P
T
---
A
A
C
C
S
S
L
----
R
A
-----------
Q
-------------
Q
G
------------
C
F
C
Q
F
A
K
D
------
P
R
Y
G
R
Y
--
V
N
S
P
N
A
---
R
K
A
-
V
S
S
-
C
G
I
A
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
87.91
50%
-128
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
--
N
--
A
G
--
Q
L
---
T
V
C
T
G
-------
A
I
--
A
-------------
G
G
--
A
--
R
-
P
T
---
A
A
C
C
S
S
L
----
R
A
-----------
Q
-------------
Q
G
------------
C
F
C
Q
F
A
K
D
------
P
R
Y
G
R
Y
--
V
N
S
P
N
A
---
R
K
A
-
V
S
S
-
C
G
I
A
L
P
-------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
80.47
37%
-120
- C4 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
--
Q
--
A
S
--
Q
L
---
A
V
C
A
S
-------
A
I
--
L
-------------
S
G
--
A
--
K
-
P
S
---
G
E
C
C
G
N
L
----
R
A
-----------
Q
-------------
Q
G
------------
C
F
C
Q
Y
A
K
D
------
P
T
Y
G
Q
Y
--
I
R
S
P
H
A
---
R
D
T
-
L
T
S
-
C
G
L
A
V
P
-------
H
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
70.49
25%
-68
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
--
L
V
---
R
P
C
L
S
-------
Y
V
--
Q
-------------
G
G
--
P
--
G
-
P
S
---
G
Q
C
C
D
G
V
----
K
N
L
H
N
Q
ARS
Q
S
D
R
Q
-------------
S
A
------------
C
N
C
L
K
G
I
A
------
R
G
I
H
-
N
--
L
N
E
D
N
A
---
R
S
I
-
P
P
K
-
C
G
V
N
L
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
69.31
24%
-102
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
D
L
C
GM
S
--
Q
D
--
E
L
---
N
E
C
K
P
-------
A
V
--
S
-------------
K
E
NP
T
--
S
-
P
S
---
Q
P
C
C
T
A
L
----
Q
H
-----------
A
------------
D
F
A
------------
C
L
C
G
Y
K
N
S
------
P
W
L
G
S
F
G-
V
D
P
E
L
A
---
S
A
L
-
P
K
Q
-
C
G
L
A
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
SP3
67.98
24%
-80
- C4 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
--
G
Q
V
A
S
--
A
I
---
A
P
C
I
S
-------
Y
A
--
R
-------------
G
Q
--
G
--
S
G
P
S
---
A
G
C
C
S
G
V
----
R
S
-----------
L
------------
N
N
A
ART
T
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
G
V-----
S
G
------
L
N
A
G
N
A
---
A
S
I
-
P
S
K
-
C
G
V
S
I
P
YTISTST
D
C
SRVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
65.73
34%
-70
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[1-79]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
C
--
G
--
Q
V
S
S
S
L
---
A
P
C
I
P
-------
Y
V
--
R
-------------
G
G
--
G
--
A
-
V
P
---
P
A
C
C
N
G
I
----
R
N
V
N
N
L
A
RT
T
P
D
R
Q
-------------
A
A
------------
C
N
C
--
L
K
Q
------
L
S
-
A
S
V
PG
V
N
P
N
N
A
---
A
A
L
-
P
G
K
-
C
G
V
S
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
65.36
30%
-84
- C4 -
1AFH
-
NLTP_MAIZE
A:
[1-80]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
--
G
--
Q
V
A
S
A
I
---
A
P
C
I
S
-------
Y
A
--
R
-------------
G
Q
--
G
--
S
G
P
S
---
A
G
C
C
S
G
V
----
R
S
L
N
N
A
A
RT
T
A
D
R
R
-------------
A
A
------------
C
N
C
--
L
K
N
------
A
A
-
A
G
V
SG
L
N
A
G
N
A
---
A
S
I
-
P
S
K
-
C
G
V
S
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
64.48
25%
-101
- C4 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
D
--
E
L
---
N
E
C
K
P
-------
A
V
--
S
-------------
K
E
--
N
PT
S
-
P
S
---
Q
P
C
C
T
A
L
----
Q
H
-----------
A
------------
D
F
A
------------
C
L
C
G
Y
K
N
S
------
P
W
L
G
S
F
G-
V
D
P
E
L
A
---
S
A
L
-
P
K
Q
-
C
G
L
A
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
63.67
27%
-55
- C4 -
1T12
-
NLTP1_TOBAC
A:
[1-78]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
C
--
G
--
Q
V
T
S
N
L
---
A
P
C
L
A
-------
Y
L
--
R
-------------
N
T
--
G
----
P
L
---
G
R
C
C
G
G
V
----
K
A
L
V
N
S
A
RT
T
E
D
R
Q
-------------
I
A
------------
C
T
C
--
L
K
S
------
A
A
-
G
A
I
SG
I
N
L
G
K
A
---
A
G
L
-
P
S
T
-
C
G
V
N
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
61.77
22%
-110
* C4 *
1HYP
-
HPSE_SOYBN
A:
[7-73]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
C
--
P
------
D
L
---
S
I
C
L
N
-------
I
L
GG
S
-------------
L
G
--
T
-----
V
---
D
D
C
C
A
L
I
----
G
G
-----------
L
G
D
I
E
--------
A
I
V
------------
C
L
C
I
Q
L
R
A
--------
L
G
I
---
L
N
L
N
R
N
L
--
Q
L
I
-
L
N
S
-
C
G
R
S
Y
P
-------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
56.57
21%
-79
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
G
--
N
L
---
A
Q
C
I
G
-------
F
L
--
Q
-------------
K
G
--
G
--
V
-
V
P
---
P
S
C
C
T
G
V
----
K
N
I
L
NSSRTTADR
R
-------------
A
V
------------
C
S
C
L
K
A
A
A
------
G
A
V
R
-
G
--
I
N
P
N
N
A
---
E
A
L
-
P
G
K
-
C
G
V
N
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
55.39
18%
-96
- C4 -
2E5J
-
MTHSD_HUMAN
A:
[287-383]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
S
G
--
S
--
S
G
--
P
G
---
S
P
P
G
E
GAPLAA
D
V
Y
--
V
-------------
G
N
--
L
--
P
-
R
D
AR
V
S
D
L
K
R
A
L
----
R
E
-----------
L
GSVPL
R
L
T
W
Q
G
P
R
R
R
------------
A
F
L
H
Y
P
D
S
------
A
A
A
Q
Q
A
--
V
S
C
L
Q
G
---
L
R
L
G
T
D
T
-
L
R
V
A
L
A
-------
R
Q
QRDK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
SP3
53.63
21%
-110
- C4 -
1HYP
-
?
?:
[6-80]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
S
C
--
P
------
D
L
---
S
I
C
L
N
-------
I
L
--
G
-------------
G
S
--
L
--
G
-
T
V
---
D
D
C
C
A
L
I
G
G
LG
D
I
-----------
E
------------
A
I
V
------------
C
L
C
I
Q
L
R
A
------
L
G
I
-----
L
N
L
N
R
N
---
L
Q
L
-
I
L
N
S
C
G
R
S
Y
P
SNA----
T
C
PRT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
53.45
15%
-62
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
--
E
--
A
E
--
M
L
---
N
H
C
G
M
-------
Y
L
--
M
KNLGERSQVSPR
M
R
E
--
E
--
D
-
H
K
---
Q
L
C
C
M
Q
L
----
K
N
-----------
L
------------
D
E
K
------------
C
M
C
P
A
I
M
M
M
L
N
EPM
W
I
R
M
R
D
--
Q
V
M
S
M
A
---
H
N
L
-
P
I
E
-
C
N
L
M
S
Q
-------
P
C
QM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
51.11
9%
-117
- C4 -
3ZR8
1
?
X:
[1-65]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
P
T
--
E
--
K
A
--
A
V
---
K
K
M
A
K
-------
A
I
--
M
-------------
A
D
--
P
--
S
-
K
A
---
D
D
V
Y
Q
K
W
----
A
D
-----------
K
------------
G
Y
T
-------------------
L
------
T
Q
L
S
D
F
--
L
K
S
K
T
R
GKY
D
R
V
-
Y
N
G
-
Y
M
T
Y
R
D
-------
Y
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
49.77
11%
-93
- C4 -
1BS0
-
BIOF_ECOLI
A:
[2-384]
S
W
Q
E
K
I
N
A
A
L
D
A
RRAADALR
R
R
Y
P
V
AQGAGR
W
L
V
A
DDRQYLNFSSNDYLGLSHH
P
Q
I
I
R
A
W
Q
Q
G
A
E
Q
FGIGSGGSGHVSGYS
V
V
H
Q
A
L
E
E
E
L
A
E
W
L
GYS
R
A
L
L
F
IS
G
F
A
A
N
Q
A
V
I
A
A
M
MAKE
D
R
I
A
A
D
RLSH
A
S
L
L
E
A
A
S
L
SP
S
Q
L
R
R
F
AHND
V
T
H
L
A
R
L
L
A
SPCP
G
Q
Q
M
V
V
T
E
GVFSMDGDSAP
L
A
E
I
Q
Q
V
T
Q
Q
H
N
G
W
L
M
V
D
DAHGTGVIGEQGRG
S
C
W
L
Q
KVKPE
L
L
V
V
T
FGKGFG
V
S
G
A
A
V
L
C
S
S
T
V
A
D
Y
L
L
Q
FARHLIYSTSMP
P
A
Q
A
Q
A
L
R
A
S
L
A
V
I
R
S
D
E
G
D
A
R
R
E
K
L
A
A
L
I
T
R
F
R
A
G
V
Q
D
L
P
F
T
--
L
--
A
D
--
S
C
---
S
A
I
Q
P
-------
L
I
--
V
-------------
G
D
--
N
--
S
-
R
A
---
L
Q
L
A
E
K
L
----
R
Q
-----------
Q
G
C
W
V
--------
T
A
I
------------
R
P
P
T
V
P
A
G
------
T
A
R
L
-
L
T-
L
T
A
A
H
E
---
M
Q
D
-
I
D
R
-
L
L
E
V
L
H
-------
G
N
G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
SP3
47.63
15%
-91
* C5 *
1WLJ
1
ISG20_HUMAN
A:
[6-178]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E
V
V
A
M
D
C
E
M
V
G
L
G
PHRESGLA
R
C
S
L
V
N
VHGAVL
Y
D
K
F
I
RPEG
E
I
T
D
--
Y
--
R
T
--
R
V
---
S
G
V
T
P
-------
Q
H
--
M
-------------
V
G
--
A
--
T
-
P
F
---
A
V
A
R
L
E
I
----
L
Q
-----------
L
------------
L
K
------------------------------
G
K
L
--
V
V
G
H
D
L
---
K
H
D
-
F
Q
A
-
L
K
E
D
M
S
-------
G
Y
T
I
Y
D
TSTD
R
L
L
W
R
E
A
KLVS
L
R
V
L
S
E
R
LLHKSIQNSLLGHS
S
V
E
D
A
R
A
T
M
E
L
Y
Q
I
S
Q
R
I
R
A
R
R
GLPRLA-----------------------------------------------------------------------------------------------------------------------------
16
SP3
47.23
14%
-84
- C4 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
YSPN
S
P
A
Q
P
Q
--
T
--
A
G
--
T
L
T
L
L
P
V
A
L
R
-------
A
P
--
V
-------------
T
A
--
G
--
Q
-
L
A
---
V
E
N
G
H
Y
V
----
V
E
-----------
T
------------
L
A
R
------------
A
-
C
D
G
C
L
N
------
G
E
F
A
A
L
--
I
T
G
P
V
H
---
K
G
V
-
I
N
D
-
A
G
I
P
F
T
-------
G
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ATTCAPTQLTPCA
P
A
IVGNAA
P
T
A
A
C
C
A
R
LKAHP
A
T
C
F
C
Q
YKRNP
S
M
Q
R
Y
VNSPNG
K
K
V
F
A
A
C
KVSLPRC
40
98.99
100%
-121
- C- -
M040
-
A:
[1-103]
A
T
T
C
A
P
T
Q
L
T
P
C
A
P
A
I
V
G
N
A
A
P
T
A
A
C
C
A
R
L
K
A
H
P
A
T
C
F
C
Q
Y
K
R
N
P
S
M
Q
R
Y
V
N
S
P
N
G
K
K
V
F
A
A
C
K
V
S
L
P
R
C
42
91.19
100%
-122
- C- -
M042
-
A:
[1-182]
A
T
T
C
A
P
T
Q
L
T
P
C
A
P
A
I
V
G
N
A
A
P
T
A
A
C
C
A
R
L
K
A
H
P
A
T
C
F
C
Q
Y
K
R
N
P
S
M
Q
R
Y
V
N
S
P
N
G
K
K
V
F
A
A
C
K
V
S
L
P
R
C
41
89.31
100%
-124
- C- -
M041
-
A:
[1-103]
A
T
T
C
A
P
T
Q
L
T
P
C
A
P
A
I
V
G
N
A
A
P
T
A
A
C
C
A
R
L
K
A
H
P
A
T
C
F
C
Q
Y
K
R
N
P
S
M
Q
R
Y
V
N
S
P
N
G
K
K
V
F
A
A
C
K
V
S
L
P
R
C