@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 457_tII_MAIZE: (2014-05-08 )
ANPCNPAQLTPCAGPALFGGAVPPACCAQLRAQQGCLCGYARSPNYGSYIRSPNAARLFAICNLPMPRCR
Atome Classification :
(20 SA)
---------------------------------------------------------------.....--..--..---10--.----....--.-.---.20-.-.-----..--.....30---.-----------.-----.-...--..40..-.-.------------....--------50----......-...60...-.-..----------..70-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------ANPCN--PA--QL---TP--C----AG
P
A
--L-F---GG--A-V-----
P
P
--
A
C
C
A
Q
L
R
---
A
-----------Q-----Q-GCL--CGYARS-P-N------------YGSY--------I-----RSPNA
A
-
R
L
F
A
I
CNL-P-MP----------RCR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
97.99
48%
-146
- C2 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
-----------------------------------------------------------------
A
C
Q
--
A
S
--
Q
L
---
A
V
--
C
----
A
S
A
I
--
L
-
S
---
G
A
--
K
-
P
-----
S
G
--
E
C
C
G
N
L
R
---
A
-----------
Q
-----
Q
-
G
C
F
--
C
Q
Y
A
K
D
-
P
-
T
------------
Y
G
Q
Y
--------
I
-----
R
S
P
H
A
R
-
D
T
L
T
S
C
G
L
-
A
-
V
P
----------
H
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
82.74
45%
-112
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
N
--
A
G
--
Q
L
---
T
V
--
C
----
T
G
A
I
--
A
-
G
---
G
A
--
R
-
P
-----
T
A
--
A
C
C
S
S
L
R
---
A
-----------
Q
-----
Q
-
G
C
F
--
C
Q
F
A
K
D
-
P
-
R
------------
Y
G
R
Y
--------
V
-----
N
S
P
N
A
R
-
K
A
V
S
S
C
G
I
-
A
-
L
P
----------
T
C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
SP3
82.29
44%
-112
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
N
--
A
G
--
Q
L
---
T
V
--
C
----
T
G
A
I
--
A
-
G
---
G
A
--
R
-
P
-----
T
A
--
A
C
C
S
S
L
R
---
A
-----------
Q
-----
Q
-
G
C
F
--
C
Q
F
A
K
D
-
P
-
R
------------
Y
G
R
Y
--------
V
-----
N
S
P
N
A
R
-
K
A
V
S
S
C
G
I
-
A
-
L
P
----------
T
C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
82.29
44%
-112
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
N
--
A
G
--
Q
L
---
T
V
--
C
----
T
G
A
I
--
A
-
G
---
G
A
--
R
-
P
-----
T
A
--
A
C
C
S
S
L
R
---
A
-----------
Q
-----
Q
-
G
C
F
--
C
Q
F
A
K
D
-
P
-
R
------------
Y
G
R
Y
--------
V
-----
N
S
P
N
A
R
-
K
A
V
S
S
C
G
I
-
A
-
L
P
----------
T
C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
73.73
30%
-145
- C2 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
----------------------------------------------------------------------
Q
D
--
E
L
---
N
E
--
C
----
K
P
A
V
--
S
-
K
---
E
N
PT
S
-
P
-----
S
Q
--
P
C
C
T
A
L
Q
---
H
-----------
A
-----
D
F
A
C
L
--
C
G
Y
K
N
S
-
P
-
W
------------
L
G
S
F
G-------
V
-----
D
P
E
L
A
S
-
A
L
P
K
Q
C
G
L
-
A
-
N
A
P---------
T
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
73.67
38%
-114
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-79]
---------------------------------------------------------------
M
I
T
C
G
--
Q
V
S
S
S
L
---
A
P
--
C
----
I
P
Y
V
--
R
-
G
---
G
G
--
A
-
V
-----
P
P
--
A
C
C
N
G
I
R
---
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
C
N
--
C
--
L
K
Q
-
L
-
S
-------------
A
S
V
PG------
V
-----
N
P
N
N
A
A
-
A
L
P
G
K
C
G
V
-
S
-
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
70.10
31%
-127
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------A
I
D
L
C
G
MS
Q
D
--
E
L
---
N
E
--
C
----
K
P
A
V
--
S
-
K
---
E
N
--
P
-
T
-----
S
P
S
Q
P
C
C
T
A
L
Q
H
--
A
-----------
D
-----
F
-
A
C
L
--
C
G
Y
K
N
S
-
P
-
W
------------
L
G
S
F
G-------
V
-----
D
P
E
L
A
S
-
A
L
P
K
Q
C
G
L
-
A
-
N
A
P---------
T
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
66.85
31%
-110
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
----------------------------------------------------------------------
Q
G
--
N
L
---
A
Q
--
C
----
I
G
F
L
--
Q
-
K
---
G
G
--
V
-
V
-----
P
P
--
S
C
C
T
G
V
K
---
N
I
L
NSSRTTADR
R
-----
A
-
V
C
S
--
C
L
K
A
A
A
-
G
-
A
------------
V
R
-
G
--------
I
-----
N
P
N
N
A
E
-
A
L
P
G
K
C
G
V
-
N
-
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
66.78
32%
-90
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-78]
---------------------------------------------------------------
A
I
T
C
G
--
Q
V
T
S
N
L
---
A
P
--
C
----
L
A
Y
L
--
R
-
N
---
T
G
----
P
-----
L
G
--
R
C
C
G
G
V
K
---
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
C
T
--
C
--
L
K
S
-
A
-
A
-------------
G
A
I
SG------
I
-----
N
L
G
K
A
A
-
G
L
P
S
T
C
G
V
-
N
-
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
SP3
65.10
24%
-110
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------
A
I
S
C
G
Q
V
A
S
--
A
I
---
A
P
--
C
----
I
S
Y
A
--
R
-
G
---
Q
G
--
S
G
P
-----
S
A
--
G
C
C
S
G
V
R
---
S
-----------
L
-----
N
-
N
A
------
A
R
T
-
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
G
V
SG------
L
-----
N
A
G
N
A
A
-
S
I
P
S
K
C
G
V
-
S
-
I
P
YTISTST---
D
C
S
RVN-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
64.25
24%
-131
- C2 -
1HYP
-
HPSE_SOYBN
A:
[7-73]
-----------------------------------------------------------------
S
C
P
------
D
L
---
S
I
--
C
----
L
N
I
L
GG
S
-
L
---
G
T
----------
V
D
--
D
C
C
A
L
I
G
---
G
-----------
L
G
D
I
E
A
I
-
V
C
L
--
C
I
Q
L
R
A
----------------
L
G
I
---------
L
-----
N
L
N
R
N
L
Q
L
I
L
N
S
C
G
R
-
S
-
Y
P
----------
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
63.25
25%
-115
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-80]
---------------------------------------------------------------
A
I
S
C
G
--
Q
V
A
S
A
I
---
A
P
--
C
----
I
S
Y
A
--
R
-
G
---
Q
G
--
S
G
P
-----
S
A
--
G
C
C
S
G
V
R
---
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
C
N
--
C
--
L
K
N
-
A
-
A
-------------
A
G
V
SG------
L
-----
N
A
G
N
A
A
-
S
I
P
S
K
C
G
V
-
S
-
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
60.60
20%
-119
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
----------------------------------------------------------------------
D
S
--
L
V
---
R
P
--
C
----
L
S
Y
V
--
Q
-
G
---
G
P
--
G
-
P
-----
S
G
--
Q
C
C
D
G
V
K
---
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
C
N
--
C
L
K
G
I
A
-
R
-
G
------------
I
H
-
N
--------
L
-----
N
E
D
N
A
R
-
S
I
P
P
K
C
G
V
-
N
-
L
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
SP3
59.77
15%
-107
- C2 -
1KNG
-
CYCY_BRADU
A:
[50-193]
---------------------------------------------------RPAPQ
T
A
L
P
P
LE
G
L
Q
A
D
--
N
V
--
Q
V
---
P
G
--
L
----
D
P
A
A
--
F
-
K
---
G
---
K
-
V
S
L
V
N
V
W
A
--
S
W
C
V
P
C
H
---
D
-----------
E
-----
A
-
P
L
L
--
T
E
L
G
K
D
-
K
-
R
------------
F
Q
L
V
--------
G
I
N
Y
KD
A
A
D
N
A
R
-
R
F
L
G
R
Y
G
N
-
P
-
F
G
----------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L---------------------------------------------------------------------------------------------------------------------------------
9
Fugue
51.07
14%
-106
- C2 -
2EP8
-
PESC_HUMAN
A:
[315-414]
---------------------------------------------------------------
G
S
S
G
S
--
S
G
--
K
H
---
K
K
L-
F
----
E
G
L
K
--
F
-
F
L
--
N
R
--
E
-
V
-----
P
R
--
E
A
L
A
F
I
I
---
R
-----------
S
-----
F
-
G
G
E
--
V
S
W
D
K
S
-
L
-
C
------------
I
G
A
T
--------
Y
-----
D
V
T
D
S
R
-
I
T
H
Q
I
V
D
R
-
P
-
G
Q
----------
Q
T
S
V
IG
R
C
Y
V
Q
P
Q
W
V
F
D
S
V
N
A
RLLLPVAEYF----------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
48.65
12%
-111
- C2 -
3FBI
-
MED31_YEAST
B:
[19-110]
---------------------------------------------------------QNPLPT
R
F
E
V
E
--
L
E
--
F
I
---
Q
S
--
L
----
A
N
I
Q
--
Y
-
V
---
T
Y
--
L
-
L
-----
T
Q
--
Q
Q
I
W
K
S
P
---
N
-----------
F
-----
K
-
N
Y
L
K
Y
L
E
Y
W
C
N
-
P
-
P
------------
Y
S
Q
C
--------
I
-----
V
Y
P
N
C
L
-
F
I
L
K
L
L
N
G
-
F
M
E
S
----------
A
I
V
N
EDGLLEGLDELP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
SP3
46.17
8%
-100
- C2 -
1U78
-
TC3A_CAEEL
A:
[2-104]
-------------------------------------------------------------PR
G
S
A
L
S
--
D
T
--
E
R
---
A
Q
-------
L
D
V
M
--
K
-
L
---
L
N
--
V
-
S
-----
L
H
--
E
M
S
R
K
I
S
---
R
-----------
S
-----
R
-
H
C
I
--
R
V
Y
L
K
D
-
P
V
S
------------
Y
G
T
S
KRAPRRKA
L
-----
S
V
R
D
E
R
-
N
V
I
R
A
A
S
N
-
S
-
C
K
----------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G---------------------------------------------------------------------------------------------------------------------------------------------------------------
16
SP3
46.16
10%
-83
- C2 -
1F9M
-
TRXF_SPIOL
A:
[10-121]
-------------------------------------------------------------ME
A
I
V
G
K
--
V
T
--
E
V
---
N
K
DT
F
----
W
P
I
V
--
K
A
A
---
G
D
--
K
-
P
V
V
L
D
M
F
T
--
Q
W
C
G
P
C
K
---
A
-----------
M
-----
A
-
P
K
Y
--
E
K
L
A
E
E
Y
L
-
D
V
I
----------
F
L
K
L
--------
D
-----
C
N
Q
E
N
K
-
T
L
A
K
E
L
G
I
R
V
-
V
P
----------
T
F
K
I
L
K
ENSVV
G
E
V
T
G
AK
Y
D
K
L
L
E
A
I
Q
A
A
R
S----------------------------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
42.62
22%
-103
* C1 *
2LU7
-
A:
[1-82]
----------------------------------------------------------MT
R
V
R
S
T
P
G
G
--
D
L
--
E
L
---
V
V
--
H
LSGP
G
G
P
V
--
R
-
W
Y
K
D
G
E
--
R
-
L
-----
A
S
--
Q
G
R
V
Q
L
E
Q
AG
A
-----------
R
-----
Q
-
V
L
R
--
V
Q
G
A
R
S
-
G
-
D
------------
A
G
E
Y
--------
L
-----
C
D
A
P
Q
D
-
S
R
I
F
L
V
S
V
-
E
-
E
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
SP3
40.65
11%
-121
- C2 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
YSPN
S
P
A
Q
P
Q
T
--
A
G
--
T
L
T
L
L
P
V
--
A
----
L
R
A
P
--
V
-
T
---
A
G
--
Q
-
L
-----
A
V
--
E
N
G
H
Y
V
V
---
E
-----------
T
-----
L
-
A
R
A
--
C
D
G
C
L
N
-
G
-
E
------------
F
A
A
L
--------
I
-----
T
G
P
V
H
K
-
G
V
I
N
D
A
G
I
-
P
-
F
T
G
H
T
E
F
F
E
E
R
S
Q
A
K
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ANPCNPAQLTPCAG
P
A
LFGGAV
P
P
A
C
C
A
Q
L
R
A
QQGCLCGYARSPNYGSYIRSPNA
A
R
L
F
A
I
CNLPMPRCR
41
99.82
100%
-146
- C- -
M041
-
A:
[1-89]
A
N
P
C
N
P
A
Q
L
T
P
C
A
G
P
A
L
F
G
G
A
V
P
P
A
C
C
A
Q
L
R
A
Q
Q
G
C
L
C
G
Y
A
R
S
P
N
Y
G
S
Y
I
R
S
P
N
A
A
R
L
F
A
I
C
N
L
P
M
P
R
C
R
43
97.65
100%
-151
- C- -
M043
-
A:
[1-95]
A
N
P
C
N
P
A
Q
L
T
P
C
A
G
P
A
L
F
G
G
A
V
P
P
A
C
C
A
Q
L
R
A
Q
Q
G
C
L
C
G
Y
A
R
S
P
N
Y
G
S
Y
I
R
S
P
N
A
A
R
L
F
A
I
C
N
L
P
M
P
R
C
R
42
94.93
100%
-155
- C- -
M042
-
A:
[1-89]
A
N
P
C
N
P
A
Q
L
T
P
C
A
G
P
A
L
F
G
G
A
V
P
P
A
C
C
A
Q
L
R
A
Q
Q
G
C
L
C
G
Y
A
R
S
P
N
Y
G
S
Y
I
R
S
P
N
A
A
R
L
F
A
I
C
N
L
P
M
P
R
C
R