@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 469_tVI_PICSI: (2014-05-09 )
DKCGNQIQGLLNKCSPILLGKSPSAACCGLIRSADMGCVCPKVTPQIAKQINVSKVVSVVKSCGRNVPHRTRCGSIVTP
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------........--.10......----.-----.--------------20----.--------------.-.----------.--------------.....30.--------..---.----------.----------...--40-...-..-...--50-.-------------.-------....-..----.60.-.------.....----.70........------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------DK
C
G
N
Q
I
Q
--
G
L
L
N
KCS
P
I
----
L
-----L--------------G-----K--------------S-P----------
S
--------------
A
A
C
C
G
L
I
R--------SA---D----------M----------GCV--CP-KV
T
-
P
Q
-
I
A
K
--Q--I-------------
N
-------
V
S
K
V
-
V
S
----
V
V
K
S
-C------GRNVP----HRTRCGSIVTP------------------------------------------------------------------------------------
14
HHSearch
84.94
28%
-106
- C3 -
1T12
-
NLTP1_TOBAC
A:
[3-90]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
G
Q
V
T
S
--
N
L
-
A
P
C
L
A
Y
----
L
-----
R
--------------
N
-----
T
--------------
G
-
P
----------
L
--------------
G
R
C
C
G
G
V
K
--------
A
L
---
V
----------
N
S
A
RT
T
E
D
R
Q
I
A
C
T
--
C
---
L
K
-
S
A
-
A
G
A
--
I
SG
I
-------------
N
-------
L
G
K
A
-
A
G
----
L
P
S
T
-
C
------
G
V
N
I
P
YKIS
P
S
T
D
C
S
K
V
---------------------------------------------------------------------------------------
18
HHSearch
83.61
28%
-107
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[3-91]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
G
Q
V
S
S
--
S
L
-
A
P
C
I
P
Y
----
V
-----
R
--------------
G
G----
G
--------------
A
-
V
----------
P
--------------
P
A
C
C
N
G
I
R
--------
N
V
---
N
N
L
A
RT
T
P
D
R
Q
A
----------
A
C
N
--
C
---
L
K
-
Q
L
-
S
A
S
VP
G
--
V
-------------
N
-------
P
N
N
A
-
A
A
----
L
P
G
K
-
C
------
G
V
S
I
P
YKIS
A
S
T
N
C
A
T
V
---------------------------------------------------------------------------------------
1
Fugue
82.75
30%
-102
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-------------------------------------------------------------------------------------------------------------------------------------------------------------AI
D
L
C
G
M
S
-
Q
--
D
E
L
N
E
C
K
P
A
----
V
-----
S
--------------
K
ENP--
T
--------------
S
-
P
----------
S
--------------
Q
P
C
C
T
A
L
Q
--------
H
A
---
D
----------
F
----------
A
C
L
--
C
G
-
Y
K
N
-
S
P
-
W
L
G
--
S
F
G
V
-------------
D
-------
P
E
L
A
-
S
A
----
L
P
K
Q
-
C
------
G
L
A
N
A
------
P
T
C
------------------------------------------------------------------------------------------
17
HHSearch
79.10
31%
-97
- C3 -
1AFH
-
NLTP_MAIZE
A:
[3-92]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
S
C
G
Q
V
A
S
--
A
I
-
A
P
C
I
S
Y
----
A
-----
R
--------------
G
-----
Q
G-------------
S
G
P
----------
S
--------------
A
G
C
C
S
G
V
R
--------
S
L
---
N
----------
N
A
A
RT
T
A
D
R
R
A
A
C
N
--
C
---
L
K
-
N
A
-
A
A
G
--
V
SG
L
-------------
N
-------
A
G
N
A
-
A
S
----
I
P
S
K
-
C
------
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
---------------------------------------------------------------------------------------
19
HHSearch
78.45
27%
-68
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[2-90]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
G
Q
V
Q
G
--
N
L
-
A
Q
C
I
G
F
----
L
-----
Q
--------------
K
-----
G
G-------------
V
-
V
----------
P
--------------
P
S
C
C
T
G
V
K
--------
N
I
---
L
----------
N
SSRTTADR
R
A
V
C
S
--
C
L
-
K
A
A
-
A
G
-
A
V
R
--
G
--
I
-------------
N
-------
P
N
N
A
-
E
A
----
L
P
G
K
-
C
------
G
V
N
I
P
YKIS
T
S
T
N
C
N
S
I
---------------------------------------------------------------------------------------
11
HHSearch
77.54
29%
-101
- C3 -
2RKN
2
DIRL1_ARATH
A:
[3-77]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
Q
D
--
E
L
-
N
E
C
K
P
A
----
V
-----
S
--------------
K
-----
E
NPT-----------
S
-
P
----------
S
--------------
Q
P
C
C
T
A
L
Q
--------
H
A
---
D
----------
F
----------
A
C
L
--
C
G
-
Y
K
N
-
S
P
W
L
G
S
F
-
G
--
V
-------------
D
-------
P
E
L
A
-
S
A
----
L
P
K
Q
-
C
------
G
L
A
N
A
----
P
--
T
C
------------------------------------------------------------------------------------------
12
HHSearch
76.77
33%
-118
- C3 -
1N89
1
NLT2G_WHEAT
A:
[7-65]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
V
C
A
S
A
----
I
-----
L
--------------
S
G----
A
--------------
K
-
P
----------
S
--------------
G
E
C
C
G
N
L
R
--------
A
Q
---
Q
---------------------
G
C
F
--
C
Q
-
Y
A
K
D
P
T
-
Y
G
Q
--
Y
--
I
-------------
R
-------
S
P
H
A
-
R
D
----
T
L
T
S
-
C
------
G
L
A
V
P
---------------------------------------------------------------------------------------------------
31
SP3
76.43
27%
-92
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
--------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
S
C
G
-
Q
V
A
--
S
A
I
A
P
C
I
S
Y
----
A
-----
R
--------------
G
QG---
S
--------------
G
-
P
----------
S
--------------
A
G
C
C
S
G
V
R
S
L
N
N
A
ART
T
A
---
D
----------
R
----------
R
A
A
--
C
N
-
C
L
K
-
N
A
-
A
A
G
--
V
SG
L
-------------
N
-------
A
G
N
A
-
A
S
----
I
P
S
K
-
C
------
G
V
S
I
P
YTIS
T
S
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------
4
Fugue
74.91
22%
-118
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
A
E
M
L
N
H
C
G
M
Y
----
L
-----
M
KNLGERSQVSPR
M
R
E
-----
E
--------------
D
-
H
----------
K
--------------
Q
L
C
C
M
Q
L
K
--------
N
L
---
D
----------
E
----------
K
C
M
--
C
--
P
A
I
-
M
M
-
M
L
N
--
E
--
P
-------------
M
-------
W
I
R
M
-
R
D
----
Q
V
M
S
-
M
------
A
H
N
L
P
----
I
E
--
C
N
L
M
S
Q
P
CQM---------------------------------------------------------------------------------
2
Fugue
71.06
34%
-76
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
---
N
A
--
G
Q
L
T
V
C
T
G
A
----
I
-----
A
G-------------
G
-----
A
--------------
R
-
P
----------
T
--------------
A
A
C
C
S
S
L
R
---------
A
---
Q
----------
Q
----------
G
C
F
--
C
Q
F
A
K
D
-
P
R
-
Y
G
R
--
Y
--
V
-------------
N
-------
S
P
N
A
-
R
K
----
A
V
S
S
-
C
------
G
I
A
L
P
-------
T
C
H
-----------------------------------------------------------------------------------------
16
HHSearch
70.64
25%
-75
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[2-89]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
D
C
G
H
V
D
S
--
L
V
-
R
P
C
L
S
Y
----
V
-----
Q
--------------
G
-----
G
P-------------
G
-
P
----------
S
--------------
G
Q
C
C
D
G
V
K
--------
N
L
---
H
----------
N
Q
ARS
Q
S
D
R
Q
S
A
C
N
--
C
L
-
K
G
I
-
A
R
-
G
I
H
--
N
--
L
-------------
N
-------
E
D
N
A
-
R
S
----
I
P
P
K
-
C
------
G
V
N
L
P
Y
T
I
S
L
N
I
D
C
S
R
----------------------------------------------------------------------------------------
24
HHSearch
69.37
17%
-112
- C3 -
2LVF
-
?
A:
[7-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
E
C
R
E
Q
M
Q
R
Q
Q
M
L
S
H
C
R
M
Y
----
M
-----
R
--------------
Q
Q
M
E
E
S
T
--------------
Y
-
Q
TMPRRGMEP
H
M
--------------
S
E
C
C
E
Q
L
E
--------
G
M
---
D
----------
E
----------
S
C
R
--
C
E
-
G
L
R
-
M
M
-
M
R
M
--
M
--
Q
Q
K
EM
Q
P
R
G
E
Q
M
R
R
M
-------
M
R
L
A
-
E
N
----
I
P
S
R
-
C
------
N
L
S
-----------------------------------------------------------------------------------------------------
35
SP3
67.59
22%
-149
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
A
E
M
L
N
H
C
G
M
Y
----
L
-----
M
--------------
K
-----
N
--------------
L
-
G
----------
E
RSQVSPR
M
R
E
E
D
H
K
Q
L
C
C
M
Q
L
K
--------
N
L
---
D
----------
E
----------
K
C
M
--
C
------
P
A
-
I
M
M
--
M
--
L
-------------
N
EPMWIRM
R
D
Q
V
-
M
S
M
A
H
N
L
P
I
E
-
C
------
N
--
L
M
----
S
Q
-
P
C
Q
M
----------------------------------------------------------------------------------------
32
SP3
66.61
22%
-134
- C3 -
1HYP
-
?
?:
[6-80]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
P
S
C
P
D
-------
L
S
I
C
L
N
I
----
L
-----
G
--------------
G
-----
S
--------------
L
-
G
----------
T
V
-------------
D
D
C
C
A
L
I
G
--------
G
L
---
G
D
I
E
A
------
I
----------
V
C
L
--
C
I
-
Q
L
R
-
A
---
L
G
--
I
--
L
-------------
N
-------
L
N
R
N
-
L
Q
----
L
I
L
N
S
C
------
G
R
S
Y
P
----
S
N
A
T
C
P
R
T
---------------------------------------------------------------------------------------
13
HHSearch
65.05
33%
-83
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[8-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
V
C
T
G
A
----
I
-----
A
--------------
G
G----
A
--------------
R
-
P
----------
T
--------------
A
A
C
C
S
S
L
R
--------
A
Q
--------------
Q
----------
G
C
F
--
C
Q
-
F
A
K
D
P
R
-
Y
G
R
--
Y
--
V
-------------
N
-------
S
P
N
A
-
R
K
----
A
V
S
S
-
C
------
G
I
A
L
P
-------
T
C
H
-----------------------------------------------------------------------------------------
21
HHSearch
63.75
22%
-98
- C3 -
1S6D
-
2SS8_HELAN
A:
[10-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
G
C
Y
Q
Q
M
E
E
A
E
M
L
N
H
C
G
M
Y
----
L
-----
M
--------------
K
-----
N
LGERSQVSPR
M
R
E
E
D
-
H
----------
K
--------------
Q
L
C
C
M
Q
L
K
--------
N
L
---
D
----------
E
----------
K
C
M
--
C
P
-
A
I
M
-
M
M
-
L
N
E
--
P
--
M
WIRMR
D
Q
------
V
-------
M
S
M
A
-
H
N
----
L
P
I
E
-
C
------
N
L
M
-----------------------------------------------------------------------------------------------------
23
HHSearch
57.11
20%
-103
- C3 -
2DS2
-
?
B:
[7-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
--------------
R
Q
C
C
N
Q
L
R
--------
Q
V
---
D
----------
R
----------
P
C
V
--
C
P
-
V
L
R
-
Q
A
-
A
Q
Q
--
V
--
L
Q
R
Q
IIQG
P
Q
Q
L
R
R
L
-------
F
D
A
A
-
R
N
----
L
P
N
I
-
C
------
N
I
P
N
I
----
G
A
--
C
P
F
----------------------------------------------------------------------------------------
20
HHSearch
56.40
28%
-123
- C3 -
1HYP
-
HPSE_SOYBN
A:
[25-79]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--------------
D
D
C
C
A
L
I
G
--------
G
L
G--
D
----------
I
E
A
I
-------
V
C
L
--
C
I
-
Q
L
R
-
A
---
L
G
--
I
--
L
-------------
N
-------
L
N
R
N
L
Q
L
----
I
L
N
S
-
C
------
G
R
S
Y
P
----
S
N
A
T
C
P
R
----------------------------------------------------------------------------------------
40
SP3
55.02
13%
-115
- C3 -
2DRI
1
?
?:
[1-271]
K
D
T
I
A
L
V
V
STLNN
P
F
F
V
S
L
K
D
G
A
Q
K
E
A
D
K
L
G
Y
N
L
V
V
L
D
SQNN
P
A
K
E
L
A
N
V
Q
D
L
T
V
RGTK
I
L
L
I
NPTDSDAV
G
N
A
V
K
M
A
N
Q
A
N
I
P
V
I
T
L
DRQATKGEVV
S
H
I
A
S
D
N
V
L
G
G
K
I
A
G
D
Y
I
A
K
K
AGEG
A
K
V
I
E
L
Q
G
IAGT
S
A
A
R
E
R
G
E
G
F
Q
Q
A
V
A
A
H
KFNVL
A
S
Q
P
A
D
F
D
R
I
--
K
G
L
N
V
M
Q
N
L
----
L
-----
T
A
-------------
H
-----
P
--------------
D
-
V
----------
Q
A
V
F
A
QN
D
E
M
A
----
L
G
A
L
R
A
L
Q
--------
T
A
GKS
D
----------
V
----------
M
V
V
--
G
F
-
D
G
T
-
P
D
-
G
E
K
--
A
--
V
N
D
GKLA
A
T
I
A
Q
--
L
-------
P
D
Q
I
-
G
A
----
K
G
V
E
-
T
A
D
K
V
L
K
G
E
K
V
Q
----
A
-----
K
Y
P
V
D
L
K
L
V
V
K
Q-----------------------------------------------------------------------------
38
SP3
54.77
13%
-116
- C3 -
1QWG
-
PSLS_METJA
A:
[1-251]
-----------------------------------------------------------------------------MKAFEFL
Y
E
D
F
QR
G
L
T
V
V
L
D
KGLP
P
K
F
V
E
D
Y
L
K
V
CGDYID
F
V
K
FGWGTSAVID
R
D
V
V
K
E
K
I
N
Y
Y
K
D
W
G
I
K
V
Y
P
G
G
T
L
F
E
Y
A
Y
S
K
--
G
K
F
D
--
E
F
L
N
E
C
E
K
L
GFE
A
V
E
I
S
DG
S
--------------
S
-----
D
--------------
I
-
S
----------
L
--------------
E
E
R
N
N
A
I
K
--------
R
A
K
D
N
G
----------
F
----------
M
V
L
T
E
V
G
-
K
K
M
-
P
D
-
K
D
K
--
Q
--
L
-------------
T
-------
I
D
D
R
-
I
K
----
L
I
N
F
-
D
---------
L
D
----
A
G
A
---
D
Y
V
I
I
E
GRESGKGKGLFDKEGKVK
E
N
E
L
D
V
L
A
K
N
VDINK
V
I
F
EAPQ
K
S
Q
Q
V
A
F
I
L
K
FGSS
V
N
L
A
NIAFDE
V
I
S
L
E
T
L
R
R
GLRGDTFGKV
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
DK
C
G
N
Q
I
Q
G
L
L
N
KCS
P
I
L
LGKSP
S
A
A
C
C
G
L
I
RSADMGCVCPKV
T
P
Q
I
A
K
QI
N
V
S
K
V
V
S
V
V
K
S
CGRNVPHRTRCGSIVTP
47
96.58
100%
-126
- C- -
M047
-
A:
[1-109]
D
K
C
G
N
Q
I
Q
G
L
L
N
K
C
S
P
I
L
L
G
K
S
P
S
A
A
C
C
G
L
I
R
S
A
D
M
G
C
V
C
P
K
V
T
P
Q
I
A
K
Q
I
N
V
S
K
V
V
S
V
V
K
S
C
G
R
N
V
P
H
R
T
R
C
G
S
I
V
T
P
48
92.55
100%
-122
- C- -
M048
-
A:
[1-109]
D
K
C
G
N
Q
I
Q
G
L
L
N
K
C
S
P
I
L
L
G
K
S
P
S
A
A
C
C
G
L
I
R
S
A
D
M
G
C
V
C
P
K
V
T
P
Q
I
A
K
Q
I
N
V
S
K
V
V
S
V
V
K
S
C
G
R
N
V
P
H
R
T
R
C
G
S
I
V
T
P
46
85.78
100%
-111
- C- -
M046
-
A:
[1-205]
D
K
C
G
N
Q
I
Q
G
L
L
N
K
C
S
P
I
L
L
G
K
S
P
S
A
A
C
C
G
L
I
R
S
A
D
M
G
C
V
C
P
K
V
T
P
Q
I
A
K
Q
I
N
V
S
K
V
V
S
V
V
K
S
C
G
R
N
V
P
H
R
T
R
C
G
S
I
V
T
P