@TOME V2.3
(Nov 2016)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 471_tIV_POPTR: (2014-05-09 )
VSVCDISEDGLAACKPSVTKPDPVEPPSVDCCKAVSGANFTCLCSYKNSYLLPYLGIDPDLAMALPSKCNLSTAVPSC
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------....----.....10.......----.-----------------------20----.----.---.-..---------.---.-------.---.30.......--------.------------40---------.--...---------------.---------.------...50------..--------------.------.-.---------.-----.-----.60....------....--70....--.-----..----------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------VSVC----DISEDGLAACKPSV----T-----------------------K-----P----D---P-VE---------P---P-------S---
V
D
C
C
K
AVSGA--------
N
------------
F
----------
T
--
C
L
C
---------------S---------Y------KN
S
Y
L
------
L
P
--------------Y------L-G---------I-----D-----P
D
L
A
M
AL------PSKC--NLSTAV--P-----SC----------------
9
HHSearch
96.78
49%
-144
- C3 -
2RKN
2
DIRL1_ARATH
A:
[3-77]
-------------------------------------------------------------------------------------------------------------
D
L
C
----
G
M
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Q
D
E
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A
V
----
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-----------------------
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-----
E
----
N
---
P
-
T
----------
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---
P
-------
S
---
Q
P
C
C
T
A
L
Q
H
A
--------
D
------------
F
----------
A
--
C
L
C
---------------
G
---------
Y
------
K
N
S
P
W
------
L
G
--------------
S
------
F
-
G
---------
V
-----
D
-----
P
E
L
A
S
A
L
------
P
K
Q
C
--
G
L
A
N
A
P
--------
T
C
----------------
1
Fugue
95.83
50%
-126
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------A
I
D
L
C
----
G
M
S
Q
D
E
L
N
E
C
K
P
A
V
----
S
-----------------------
K
-----
E
----
N
---
P
--
T
---------
S
---
P
-------
S
---
Q
P
C
C
T
A
L
Q
H
A
--------
D
------------
F
----------
A
--
C
L
C
---------------
G
---------
Y
------
K
N
S
P
W
------
L
G
--------------
S
------
F
-
G
---------
V
-----
D
-----
P
E
L
A
S
A
L
------
P
K
Q
C
--
G
L
A
N
A
---
P
-----
T
C
----------------
29
HHSearch
71.62
27%
-101
- C3 -
1BEA
-
ITRF_MAIZE
A:
[13-109]
----------------------------------------------------------------------------------------------------------------------
P
H
N
P
L
P
S
C
R
W
Y
V
----
T
-----------------------
S
-----
R
TCGI
G
---
P
-
R
----------
L
---
P
W
P
E
L
---
K
---
R
R
C
C
R
E
L
A
D
I
--------
P
------------
A
----------
Y
--
C
R
C
---------------
T
---------
A
------
L
S
I
L
M
D
G
A
I
P
P
G
P
--------------
D
AQL
E
G
R
L
-
E
D
LPGCP
R
E
-
V
-----
Q
-----
R
G
F
A
A
T
L
VT----
E
A
E
C
--
N
L
A
T
I
---------------------------
37
SP3
66.84
25%
-111
- C3 -
1BEA
-
?
?:
[5-120]
--------------------------------------------------------------------------------------------------------------
S
C
VPGW
A
I
P
H
N
P
L
P
S
C
R
W
Y
V
----
T
S
R
TC-------------------
G
-----
I
----
G
---
P
-
R
L
---------
P
---
W
-------
P
E
L
K
R
R
C
C
R
E
L
A
D
I
--------
P
------------
A
----------
Y
--
C
R
C
T
A
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S
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M
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G
A
I
P
P
G
P
D
---------
A
------
Q
L
E
G
R
------
L
E
--------------
D
------
L
P
G
---------
C
-----
P
-----
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
--
N
L
A
T
I
S
GV
A
-----
E
C
PWILG-----------
17
HHSearch
66.43
32%
-87
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[3-79]
--------------------------------------------------------------------------------------------------------------
T
C
----
G
Q
V
S
S
S
L
A
P
C
I
P
Y
V
----
R
-----------------------
G
-----
G
----
G
----------------
A
---
V
-------
P
---
P
A
C
C
N
G
I
R
N
V
--------
N
N
L
A
RT
T
P
D
R
Q
--
A
----------
A
--
C
N
C
-------------------------
L
------
K
Q
L
--------
S
A
--------------
S
------
V
P
G
---------
V
-----
N
-----
P
N
N
A
A
A
L
------
P
G
K
C
--
G
V
S
I
P
---------------------------
30
SP3
64.71
25%
-90
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-----------------------------------------------------------------------------------------------------------A
I
S
-
C
----
G
Q
V
A
S
A
I
A
P
C
I
S
Y
A
----
R
-----------------------
G
-----
Q
----
G
---
S
-
G
--------------
P
-------
S
---
A
G
C
C
S
G
V
R
S
L
--------
N
N
A
ART
T
A
D
R
R
A
A
C
----------
N
--
C
L
K
---------------
N
---------
A
------
A
A
G
V
S
-------------------------------
G
---------
L
-----
N
-----
A
G
N
A
A
S
I
------
P
S
K
C
--
G
V
S
I
P
Y
--
T
ISTST
D
C
SRVN------------
32
SP3
63.95
23%
-124
- C3 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
--------------------------------------------------------------------------------------------------------------
M
C
YPGQ
A
F
Q
V
P
A
L
P
A
C
R
P
L
L
R
L
Q
C
N
-----------------------
G
-----
S
----
Q
---
V
-
P
E
---------
A
---
V
-------
L
---
R
D
C
C
Q
Q
L
A
H
I
--------
S
------------
E
----------
W
--
C
R
C
---------------
G
A
L
Y
S
M
L
D
S
M
Y
------
K
E
H
G
A
------
F
P
-----------------------
R
---------
C
-----
R
R
E
V
V
-
K
L
T
A
A
S
I
------
T
A
V
C
--
R
L
P
I
V
V
--
D
-----
A
S
GDGAYVC
K
D
V
A
A
YPDA
11
HHSearch
63.72
30%
-63
- C3 -
1AFH
-
NLTP_MAIZE
A:
[3-80]
--------------------------------------------------------------------------------------------------------------
S
C
----
G
Q
V
A
S
A
I
A
P
C
I
S
Y
A
----
R
-----------------------
G
-----
Q
----
G
---
S
------------
G
---
P
-------
S
---
A
G
C
C
S
G
V
R
S
L
--------
N
------------
N
A
A
RT
T
A
D
R
R
A
A
--
C
N
C
-------------------------
L
------
K
N
A
--------
A
A
--------------
G
------
V
S
G
---------
L
-----
N
-----
A
G
N
A
A
S
I
------
P
S
K
C
--
G
V
S
I
P
---------------------------
24
HHSearch
63.67
23%
-55
- C3 -
1HSS
-
IAA1_WHEAT
A:
[13-105]
----------------------------------------------------------------------------------------------------------------------
Q
V
P
A
L
P
A
C
R
P
L
L
----
R
-----------------------
L
-----
Q
----
C
N
G-
S
-
Q
V
P
E
-------
A
---
V
-------
L
---
R
D
C
C
Q
Q
L
A
H
I
--------
S
------------
E
----------
W
--
C
R
C
---------------
G
---------
A
------
L
Y
S
M
L
------
D
S
M
Y
K
E
H-------------------GAFPRCR
R
E
V
-----
V
-----
K
L
T
A
A
S
I
------
T
A
V
C
--
R
L
P
I
V
V
--------------------------
12
HHSearch
62.85
29%
-76
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[2-78]
--------------------------------------------------------------------------------------------------------------
T
C
----
G
Q
V
Q
G
N
L
A
Q
C
I
G
F
L
----
Q
-----------------------
K
-----
G
----
G
----------------
V
---
V
-------
P
---
P
S
C
C
T
G
V
K
N
I
L
NSSRTTA
D
------------
R
----------
R
A
V
C
S
C
---------------
L
---------
K
------
A
A
---------
A
G
--------------
A
------
V
R
G
---------
I
-----
N
-----
P
N
N
A
E
A
L
------
P
G
K
C
--
G
V
N
I
P
---------------------------
5
Fugue
61.22
19%
-77
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
----------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
E
A
EM
L
N
H
C
----
G
M
Y
L
M
K
N
L
G
E
R
S
Q
V
----
S
-----------------------
P
-----
R
----
M
---
R
-
E
E
---------
D
---
H
-------
K
---
Q
L
C
C
M
Q
L
K
N
L
--------
D
------------
E
----------
K
--
C
M
C
---------------
P
---------
A
------
I
M
M
M
L
------
N
E
--------------
P
------
M
-
W
---------
I
-----
R
MR
D
Q
V
M
S
M
A
H
N
L
------
P
I
E
C
--
N
L
M
S
Q
P
--
C
-----
Q
M
----------------
15
HHSearch
59.49
28%
-83
- C3 -
1T12
-
NLTP1_TOBAC
A:
[3-78]
--------------------------------------------------------------------------------------------------------------
T
C
----
G
Q
V
T
S
N
L
A
P
C
L
A
Y
L
----
R
-----------------------
N
-----
T
----
G
--------------------
P
-------
L
---
G
R
C
C
G
G
V
K
A
L
--------
V
------------
N
S
A
RT
T
E
D
R
Q
I
A
--
C
T
C
-------------------------
L
------
K
S
A
--------
A
G
--------------
A
------
I
S
G
---------
I
-----
N
-----
L
G
K
A
A
G
L
------
P
S
T
C
--
G
V
N
I
P
---------------------------
28
HHSearch
59.25
22%
-82
* C3 *
1B1U
-
IAAT_ELECO
A:
[12-108]
---------------------------------------------------------------------------------------------------------------------
I
P
H
N
P
L
D
S
C
R
W
Y
V
----
S
-----------------------
T
-----
R
T
CGV
G
---
P
-
R
L
---------
A
T
Q
E
M
-------
K
---
A
R
C
C
R
Q
L
E
A
I
--------
P
------------
A
----------
Y
--
C
R
C
---------------
E
---------
A
------
V
R
I
L
M
------
D
G
V
V
T
PSG
Q
H
E
G
RLLQ
D
------
L
P
G
CP-------
R
-----
Q
V
Q
R
A
-
F
A
P
K
L
V
T
------
E
V
E
C
--
N
L
A
T
I
---------------------------
23
HHSearch
57.74
25%
-83
- C3 -
2LVF
-
?
A:
[16-105]
------------------------------------------------------------------------------------------------------------------------
Q
M
L
S
H
C
R
M
Y
M
----
R
-----------------------
Q
Q
M
E
E
S
T
----
Y
---
Q
-
T
M
PRRGME---
P
---
H
-------
M
---
S
E
C
C
E
Q
L
E
G
M
--------
D
------------
E
----------
S
--
C
R
C
---------------
E
---------
G
------
L
R
M
M
M
------
R
M
M
Q
Q
K
EM--------
Q
------
P
-
R
G
E
Q
M
R
----
R
-----
M
-----
M
R
L
A
E
N
I
------
P
S
R
C
--
N
L
S
--
P
--
M
-----
R
C
----------------
10
HHSearch
57.33
23%
-99
- C3 -
1N89
1
NLT2G_WHEAT
A:
[4-67]
-----------------------------------------------------------------------------------------------------------------------
A
S
Q
L
A
V
C
A
S
A
I
----
L
-----------------------
S
-----
G
----
A
----------------
K
---
P
-------
S
---
G
E
C
C
G
N
L
R
A
Q
--------
Q
-----------------------
G
--
C
F
C
---------------
Q
---------
Y
------
A
K
D
P
T
------
Y
G
--------------
Q
--------
Y
---------
I
-----
R
-----
S
P
H
A
R
D
T
------
L
T
S
C
--
G
L
A
V
P
---------
H
C
----------------
16
HHSearch
57.01
24%
-68
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[2-78]
--------------------------------------------------------------------------------------------------------------
D
C
----
G
H
V
D
S
L
V
R
P
C
L
S
Y
V
----
Q
-----------------------
G
-----
G
--------
P
------------
G
---
P
-------
S
---
G
Q
C
C
D
G
V
K
N
L
--------
H
------------
N
Q
ARS
Q
S
D
R
Q
S
A
--
C
N
C
---------------
L
---------
K
------
G
I
A
R
-----------------------
G
------
I
H
N
---------
L
-----
N
-----
E
D
N
A
R
S
I
------
P
P
K
C
--
G
V
N
L
P
---------------------------
26
HHSearch
54.75
24%
-97
- C3 -
1SM7
-
?
A:
[14-104]
-------------------------------------------------------------------------------------------------------------------------
H
L
R
A
C
Q
Q
W
I
----
R
-----------------------
Q
-----
Q
----
L
AG
S
P
F
S
E
NQWGPQQGP
S
---
L
-------
R
---
E
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C
N
E
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Y
Q
E
--------
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------------
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----------
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--
C
V
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---------------
P
---------
T
------
L
K
Q
A
A
------
K
S
V
RVQG---------
Q
------
H
-
G
---------
P
FQST
R
I
-----
Y
Q
I
A
K
N
L
------
P
N
V
C
--
N
M
K
Q
-
I
--
G
-----
T
C
----------------
21
HHSearch
52.00
24%
-129
- C3 -
3OB4
-
?
A:
[429-488]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
C
C
N
E
L
N
E
F
EN------
N
------------
Q
----------
R
--
C
M
C
---------------
E
---------
A
------
L
Q
Q
I
M
------
E
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DR----------
L
------
Q
-
G
---------
R
-----
Q
Q
E
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Q
F
K
R
E
L
R
N
L
------
P
Q
Q
C
--
G
L
R
-
A
P
--
Q
-----
R
C
----------------
22
HHSearch
50.29
20%
-87
- C3 -
1W2Q
-
CONG_ARAHY
A:
[23-112]
------------------------------------------------------------------------------------------------------------------------
V
N
L
K
P
C
E
Q
H
I
----
M
-----------------------
Q
-----
R
----
I
---
M
-
G
E
QEQYDSYD-
I
---
R
STR
S
S
D
Q
Q
---
Q
R
C
C
D
E
L
N
E
M
EN------
T
------------
Q
----------
G
--
C
M
C
---------------
E
---------
A
------
L
Q
Q
I
M
------
E
N
--------------
Q
CDR---
L
Q
D
RQ-------
M
V
Q
---
Q
F
----
K
R
E
L
M
S
L
------
P
Q
Q
C
--
N
F
R
-----------------------------
38
SP3
49.91
17%
-102
- C2 -
1HR6
1
MPPA_YEAST
A:
[1-220]
ARTDN
F
K
L
S
S
L
ANG
L
K
V
A
T
S
N
T
P
GH
F
S
A
L
G
L
Y
I
DAGSRFEGRNLKG
C
T
H
I
L
D
R
L
AFKSTEHVE
G
R
A
M
A
E
T
L
E
L
L
GGN
Y
Q
C
T
S
S
RE
N
L
M
Y
Q
A
S
V
F
NQD
V
G
K
M
L
Q
L
M
S
E
T
V
R
F
P
----
K
I
T
E
Q
E
L
Q
E
Q
K
L
S
A
----
E
Y
E
I
D
E
V
W
M
K
P
E
L
V
L
P
E
L
L
H
T
A
A
Y
S
-----
G
----
E
---
T
-
L
G
---------
S
---
P
-------
L
---
I
C
P
R
G
L
I
P
S
I
--------
S
------------
K
----------
Y
--
Y
L
L
---------------
D
---------
Y
R
N
K
FYT
P
E
N
T
V
------
A
A
--------------
F
------
V
-
G
---------
V
-----
P
-----
H
E
K
A
L
E
L
------
T
G
K
Y
LG
D
W
Q
S
T
H
--
P
-----
P
I
T
K
K
-------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70.......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
VSVCDISEDGLAACKPSVTKPDPVEPPS
V
D
C
C
K
AVSGA
N
F
T
C
L
C
SYKN
S
Y
L
L
P
YLGIDP
D
L
A
M
ALPSKCNLSTAVPSC
46
93.78
100%
-148
- C- -
M046
-
A:
[1-97]
V
S
V
C
D
I
S
E
D
G
L
A
A
C
K
P
S
V
T
K
P
D
P
V
E
P
P
S
V
D
C
C
K
A
V
S
G
A
N
F
T
C
L
C
S
Y
K
N
S
Y
L
L
P
Y
L
G
I
D
P
D
L
A
M
A
L
P
S
K
C
N
L
S
T
A
V
P
S
C
45
88.84
100%
-141
- C- -
M045
-
A:
[1-97]
V
S
V
C
D
I
S
E
D
G
L
A
A
C
K
P
S
V
T
K
P
D
P
V
E
P
P
S
V
D
C
C
K
A
V
S
G
A
N
F
T
C
L
C
S
Y
K
N
S
Y
L
L
P
Y
L
G
I
D
P
D
L
A
M
A
L
P
S
K
C
N
L
S
T
A
V
P
S
C
42
37.69
100%
-12
- C- -
M042
-
A:
[2-136]
V
S
V
C
D
I
S
E
D
G
L
A
A
C
K
P
S
V
T
K
P
D
P
V
E
P
P
S
V
D
C
C
K
A
V
S
G
A
N
F
T
C
L
C
S
Y
K
N
S
Y
L
L
P
Y
L
G
I
D
P
D
L
A
M
A
L
P
S
K
C
N
L
S
T
A
V
P
S
C